Spo24101.1 (mRNA)

Overview
NameSpo24101.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionROTUNDIFOLIA like 19
Locationchr1 : 29603069 .. 29608102 (-)
Sequence length222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGTGTATTGTAATGCTCCTCTGTTCTCAAGATTGATTGATTAGTTAGTGCTCGTTTTTTTTCCTCTGTTATCTTAATCGATCTCTTCATTCTTTCTTTTTAGGGAATGGTTTTCCATGATAGAATTTCCAATTGCACATAGAAAAGAAGAGTGATTATTATGCTAGATTTTTAGATTAATTAGGTAGATTTTTAGCTCCTTAACTACTTCTTTTTCTTTGTACATGGTTAAATTTCTTAGTAACAATGGCTAATTTCTGATTTTGAACACTTGAGTTTTTCTTTAAGTTTGATTTCAAGTCACAACTCCGAGTATTGTGTTTCAACTTTCAAGGGGGTAACACCTAAGATATTGGATTCAATCTCGTTTTATACCATTTTCATTTGTGGCTCTCTCTGCTCTAAAAAAAACAACGGCAAGTATTATAATTTATATGAAACATAAAATTAGGTTCGTTTGGGTGTATGATGAAACCCTTTGAAACCTTTATGATGTGCAAATATGGTATTATACTATGATGCGAAGTTCATGATTCAAGTCACTGCAATTCCATAATTTCATGGGCAATCATGGCTAAAAAGATTATCATAATGTTTGAATGTTGTGGTCACTATTTGGTGATGGGTTTCATTACTTCATTATGTAACTTAAGTAATCCATGGTCGTGGCAAGGGTCTTGGGATTGGCAAGCAGACAACGAAAACGTATTTTATACGAAGTACTTGTTTAAATTTTTGGTGATGGCAAATGGGAAATAAATTGGCTATTATAATAAAAGTCCCATTTATTCGGAAATAGTATTCGCGTAAATGAGTCAATGATGTCATGGAGTGAAGGAGTAGTCATTTTATTGAACTACTCCTTATATCTCTTAATACTCGTACCGTTTTGATTTTTTGCATTATTCATATAATTTATTTTAATTCTATTTTATTTATTGTATATGAAAACAAATATTAGTATATACTAGATTGTTGGATTTATCTCAATATATATTTTCAAAATGTTAACATTTTATAAGTTTTTATAATATGTAGTTAAAGATATTGATGGTCAAAGTTGTGCATTGACAAACGTGTTCAGTCAAAACGGTGCAAATATTAATGGATGGATGAAGTATTAAACACAATAATATACCGAGTACTTTTATAAAATTTTAACATGTAAAAACTCGAGCTTTACTTCTCATATGGATTCGTTATAGCTTTCATGGACTTCATTCAATTATGTTGGAATGAAATTATAATCATAATTAAACTATTACTGGTGGTAATAGTCTAGTTTAGCTTAAGTGTCGTAATCACATCAATCATGCATATTATCTTAAACTAATTAATATGATTAATACCTTAAATTAAAGATAAGTTATATAAATTTAGGAAAGTATAGTGTATGTAGCCTATGATATGCTTGAATAAATGAAGATGATTTCGTAAAAGGTCGTCGTATACTTATGGGCGTGTTCGGCGGTAGCGTTTGAGGTAGTGGGTAGCGTTTTGATCTAGTCAAGACCCTACTTATAAAATTTGTAAGTGTTTGGTAAAGTAGCGATTTAGGTAGCGGTTAGCGGTTGGGTAGCTTTTGTCAAACGTTAAAATTAGTAGTGTTTAAGGTAGCGGGTAGCGTTTGACAAATTTATAATAAAGTTTTAAACAATATTCTTGCTTTTATTTTTATTTTATAGTATCAACCGCTACTTTTAACAAACACTCATATTAGTTGCCCGCTACTTTGACAGCTAACCGTTACCCGCTACTATTCACCGCTACTCGCTACTTTAACCGCTACCCGCTACTCAACCGCTAAACGCTACCCGCTACGGCTAATTTTGCCGAACAGGGCCATAATATATTTCACGAATTCACGGATCATATAATAAGAATGCCCTTTGGAGTTTCTGTGAAGCCATGCACTTACAACAAGCAATGAACAATCATCTACAACAAGGACTACAACTAAGTTAACGTCATAACTTGTAGGGGTTACCTGCCCTGCTATTTTTAATTCAATGTACTCCCTCAATTTATAAGATAACAATAATACGTTGATATCAAAACTTCTTCTGTACCGTTTTACTTCTTGGAATATTCATCATATATTCGTGAATTAAAATAGAGCAAGCGATTAATAACAAAATCTTGGTCATTTAGTTACAAATATAGATGCTTGTAATAGCCCATAACCTACTTAAGTAGTTAAGTGTTACTCTTGACTCTTGAGAGGATGACCTCTTAATGTGTTTTCTTCTTACCTACAGGAAAAAAAAGGAAAAAAAAAATGATACGCGATATTCCATACTCCGTACTACATTTGCATATTATGTACCAATGTAGACTAGTAGTAAAGACTGAGGATATGTTACGATAAGTATTCGGTTCGAATTCACCACCCCATTTATAATTTATATTATCCTTTATAGCTCATTCGCACCAAAGAAAAATACACATCTGCATTTTATGTAGTAATCAAACAATTTTTTAAAAAACTTTTTAAGGTAAGATAAAATGCCCCTCTTGATTTATCCTGACCTGAATTATCGGGCTATACATTATCAATGGCGAAGCTATGTGGGGACCTAGGTAGGCCATGGCCCCCCTAAGATTCTAGAAATATATACTAAAGGTTGTATTAATGAATAACTTTTTCTTCCTTAGCTGAGTTGGTATTTGAAGTTTGCTGCCAAAATGCTAGTTGCAAGTTCGAATCTAAATGCTAGCATTTCTTGTTTTTTTTTCTTGTTTTTTTTATTTATTATTTGTAATATTTGATAAATCTATCGTTCCTTTTTGCGAAATCCATNTTCTTGTTTTTTTTATTTATTATTTGTAATATTTGATAAATCTATCGTTCCTTTTTGCGAAATCCATTGAACTTATATTCGTTTCTCAATCTTCTTTTATTGTTTTCATTACATTTTTTAAGTGCTTTAGATTTTTTTATGAAGTATTATTCNATCTTCTTTTATTGTTTTCATTACATTTTTTAAGTGCTTTAGATTTTTTTATGAAGTATTATTCAATGGAAATAGATAATAAGTATGTTGCCCAACAAAATATATATACGTTTAATACTTAATATTGTTACTTAATTTTCGTTACCTAACTACTTTAAACATAACGGTACTTAGTCGGTGTTACTTAAAACTTCTTTGTTTATGGTGTCCAAGTATTTTAGGGTTCGTTTCTTCAAATATTAAAAAAAATTGGTCAATTTATATTTTACTATAATAAACAACAACAAAAACATAGTTGAATTGATTATTGAAATTGTAGTATTTTATTTTAGGGAATTAGACAAGTACTCCAATACAAAATTCCGGCCCCCCGTATACAAGAAATCTGGCTTCGCCCCTGTACATTATAGTCTGATAGTGAACACTCCGTACAACCGTATATTGTATATACCCATATGTGCATTCGGATTTTTATGCTATTCACAATCCTAACAAAATATTTTGGCTGAAATTTCAAAATAATTTTGACAGAAGAATTTGATGCGATCAGTGATGAACAGCAAAATATATCAAACAGTATTACAGATTTACAGTGTCGATCACAGAGCCTCACAGGAAAGACGGTGTAGCTCACATACTCTTATGGTGCCCTTAGTGGTGGACATATTCCTTTGCCAATTTTAGCTACACATCCACACCCATACAACTCAAAATAGCAAAATCTTTACTTGTCTTTTTGACAAAGAAAAATAGCAAAATCTTGAGGTTATAATTCTCTTTGTTTTGTACATATTGGTTTAAACTTTAAAATAGGCAAATTTGATCTAAAAAACACCAACTATGAGTCTATGACTTGGGTAGAACCAACAACACAATATTTGACTAATAGCGAAAACAACACTAAGTTTTGTAAAGAGTGCAATGTATGTCATAAATGGCACCGGCGGGCCTTATATTTTTTTTTGGAGACAAAGATCTATAATACTTTAATATGTTTTTAATATATATTTTTACTTGTTTTTTCCTCAACTCGTGTAACTTTACCTTAAATTTACCCCTTTTTTTGTTTCCTTAACTTGCCTACCTTCAAATAAAAAAGTACTAAATATCGATGATTATCTTTCTTCCTCAGAATCTACGGTTGGTGATATCATTTATGATATGTTTTGCACTTTGGAATCCAGGGTTGCCGAAATCATTTATGATATGCATTGCAGCCTTTGCAAAAGTTGGTGTTGTTCTGACCATTAGTCAAAAGTCTTGGTGTTGGCTATGTCCAAGCTATAGTTGGTAATGTTAAGGCCAATTTCGCCTTTAAAATAACCAATATATCAAACTTTATAGCGTTCATAATGAGCGAATTATTTTATACTTTGTATGTATGTTCTTGATTTCTTGGTAACGGGAACAGAGGGAAACTACAAATCTAAAGTATCTTACACAAGAACACCTGCAGATCGATCAATTATTGCTAAAATTCATCTAGATTGTTTGCTCAAATAATTAAAATGGTACTTCATTTTACAAACCTGATCAATTTTCTTAATTTGTACAACGTACATTTTCAATTTCCATAATTCTTTGTGGGACTTGAACCTTTATAGGCCTCTTTAAATTAGGGTAGGTGTCCCAAATTGATATGGGATCCAACCCACTCACACGTGCACATTGTTTTTGCAATTAAAAAAAAAACAGTAGTTTGACAATTGTAGGCAATCCCACTCTGCTTGCTTCCTGTTGGTTTTGGCCCCTCCAATGTCCAAAAACTTAAATGAGATGTGGAAAATATTTCCATTTTCACATGGTTTGATTTGGCTTCTTTTGTTTGTAATGGTCAATCTTTGAGTTATTATTTTGCAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

mRNA sequence

ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

Coding sequence (CDS)

ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

Protein sequence

MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRRIERSNFRVSCSLICLEMVRKVVANVFSFVSIVYSFLHV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24101Spo24101gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24101.1Spo24101.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24101.1.CDS.2Spo24101.1.CDS.2CDS
Spo24101.1.CDS.1Spo24101.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24101.1.exon.2Spo24101.1.exon.2exon
Spo24101.1.exon.1Spo24101.1.exon.1exon


Homology
[Close]
BLAST of Spo24101.1 vs. NCBI nr
Match: gi|731315664|ref|XP_010692497.1| (PREDICTED: uncharacterized protein LOC104905605 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 4.200e-6
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

		  

Query: 1  MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRR 36
          MG +RMMKESEKRMSSR+LGRFL EQRGRLYIIRR
Sbjct: 1  MGSSRMMKESEKRMSSRRLGRFLSEQRGRLYIIRR 35
[Close]
BLAST of Spo24101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2Q7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026390 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.900e-6
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

		  

Query: 1  MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRR 36
          MG +RMMKESEKRMSSR+LGRFL EQRGRLYIIRR
Sbjct: 1  MGSSRMMKESEKRMSSRRLGRFLSEQRGRLYIIRR 35
The following BLAST results are available for this feature:
BLAST of Spo24101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|731315664|ref|XP_010692497.1|4.2e-688.5PREDICTED: uncharacterized pro... [more]
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BLAST of Spo24101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8D2Q7_BETVU2.9e-688.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo24101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 24..35
score: 3.