Spo24189.1 (mRNA) | SpinachBase

Overview


Name	Spo24189.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	tRNA intron endonuclease
Location	SpoScf_01088 : 85199 .. 97047 (+)
Sequence length	1118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATTACATCCGGATCCGGGTCATGTTGGTATCATGGTATGTGGTTGGTTCACAATCTATAAGACTATAACCCATGTCCAAACTACAATGGTTGTAAAACTTGTGTTGCATGAAACTTGTGTTGCATATTGGATATTCAGAATTCTTATACCAACACACTCATCTGGCTTTGACAATGGATCAGAGGTAGATCGGATGAAACACCTCCATCTGCTAAAGATTCATTGGCCATCCGATCCATCCGTTATAGGATTTACTCTAATCCATATTCGATTCATCCATCATACACGGATGAATTGGGTGGAAACAAACTAAAAACGTATTTTCTCGCTTTCATAATTAAAACAAAGATTTGGGAATTTAGTGAATAATAGATAATATTTTTTAATATATTCATTTAATAATAACATAATAACAAAATTCAACAGCAAACATAAAAATATACATATGTAACTTTACAGATAAAAGAACAAACAACTTTAGCTTACAAGACCAACATTATATTGAAGCTTCAATTTATGTGTATATGGAGTTTTTGTTGGGAGTTACGAGAATAGATATAATGGAGAATGAAAAAATGAGAAAAGGTGTGGAATACTTACCGATAGACCTGTCAAACGGGTCGGTCGGGTTGTAAAAAATTATTTTCGGGTTCGGGTTGTATCGGGTTCGGGTTAACAAATGCTTGTTCAAGACCCTGAACTTTCGGGTTCGGGTCGACCCAACGGGTTGAGAGATTTTGAAACGCACATTATATTTTATTAATTTAGGTGATAAATATACAAAATATGGACACACATTAACAAATTTTCCTACACAAGTTTATATTTAGTCAAATTCAACCATAAAATGGCATATAATTCAAATTAAATTCATATTACACAGAACAATAGTAAAAACAACATGTCTATTATGCTTAAATTTCTCATAATCTCATTTATTACTATAAATACAATGATTTTCAATCGGTCGGGTCCAAAACGGGTTTGGTCGGGTTTTGACCTATTCCTTTTCGGGTTGTTTGGATTCGGATAAAATCGGGTTACGGGTCACAAAATCTTGTTCAGGACCCAGTATTTTTGGGTCGGGTTCGGGTCGATTTTCGGGTCGGGTCGATTTTTGACAGGTCTACTTACTGACATAGTGACATTAATTACTGTAATATATACGGGCCTTATGAGATTAGTGTTTTAATTCATATATTTTCTTTTATTTTATTAAATATTTAACGTGTGGATGGGTGAGACGTATACGTGATGGATCAATTATGGGTTGGATGAATCTCCATCCGATTTCGGCCCGATCCGTCATCCGATTTTTTACATTAATGACTTAGCTTATTTCTAGTGCAAGTAATAATTAATTTTATGCTTTTATTTGCTTTTAATGTAGTAAAAATAATAAACGGTTGAAAAAAACTACACAAAAACCTTTTTAAATACTACGTAGTATTAGTATATACATGTAAAATAGATCTGGATATATAAAAGAACATAACATTATACATTTATACTCCATAATAAATGAACGTAGATATTGAGATATCAAACTACTACGTACTATACGTCGTACATTCGTACATTGCAATGAGGAGTAAAACTAAGAATGGAAGTGTTTCACCTCTTAGTCTCTCACCTACCTCAGCTCATTGCTTAGCAAAGTTCCATGTCATATTCATGACTCATCCAAAGCACTTTGAACTTATATAGTAAGTTCGTCATTCTATAATTACTATCATGATTATTTGTTAGAAAGAATTATTGTTTCATTATGAACGAATGGAAGTGTTGTGTTTTTTGTAAACAAGCCAAAATTTCAATATGTCATTTTGTACGGAGTAGTAACTAGTAACAGAGGGATCAGGATGTACTATGTATGATATTTTTTTAGTTGTGCAAGAAAGATGATTGATGTACTGCTAGATGTGATCAAATTTAAAATTTTAAAATTAAGTGAAAATGTGTGTTCTATTTATCTGAATTTTTTTGTTTATATGAGCTTATTTTAGTTATAAATTGCATTTGGACAACCTTTAGTATTTGGACAACCCTTATTTTTTCTTGAACTTATTTTATATGAACTTATCTGAACTTATTTTATATAATCTTATTTTTAATAAAATAAGTGGAAACAAGGTAAAAAGAATAGGGATTTAGGTTTTATTCTCTTTACCTTATTCTTATGTTCTATTAGATCAGATTAGAAAAATCAGTCCAAACTAGACCAGAGAAAGCAAAAAAGACTCACAGAAAATTCAAACCAGACCAGACCATACCAAAAAGATAGAAAAATCAGATGATATCAGATGAAGAGAACAAAGCTTAGTTGTGACACTGCCCATAGAATTACTTGATACAGTTACAGAGGTAGGTTTACAAACTTAATCAAAATAATTAAGATCCCTCCATGATCTCACATCAACTTATATTTTTAAGTTGCTTTTGTTTTGACTTGGTAGGTTTACTTTAAATTAGGGTCAACTTTAATAATCCTTCACAATTTGAAGGAAAAAAAAAACTCATCAATTAGATTTACAAGTTCCACATAATATAATGTTGACTTGGTTGTTGACTAGACTTGAGTAAATTCTTATTCCAATCATTTTTGGCATTTAAATCTATTGCTCAAAAATTGAACACGCTTACGTCATCTTCACATCATCTTCACACAAGATCCAATTAGACGGCAACCTTATACTATACTCCAAGCAGTTAACAACATCTACACCTATCGAATGATGATGTGTGTTCGTCGTCTGGTATTGAATTTATTTAATAATAATCTCAGTTTTCTGGTATTGAATTAATTTAATAATAATCTCAGTTTTCGGGTATTGAATTAATTTATTAATCGTGTTATAGCATATCTGTACATTTAACTAGTAATATCAAATTTAATCCAAAATAGGGAGTACTATTTCATGATTTTCGCTAATTTCAAACATATTTTTAGTTTGACACAAACAAAACTCTCCATTGCTCTTGGGATTTCTATGGAGTGTAAAACCAATTCAATTTTTTTCGAATACAAGGTAAAACCAATGTTACTTTTTCAGTCGTTAATTTGCTTATTCTTTACGTTGTTATTTGTAAACCAGCAATGATAAATAAATACTATGTATAAGATGTTGGGAGAAAAATTAAGGGTCCAAACTTAACTTTTTTCCGAGTCATGATAATGTTTTTTTTCCTAAAGACATGATCGATAATGTATTTTGGAAGACCATTTCGTTTCCAAATTCTCTTCCTCAACAAATCTTAATAGTATTATCAAACAAATACATATGACAAAACAAATGTAAAAATTCTACACTTCCAATACCATGTTATTGAATATTGACCATAATTATTATGTATTTTTGAAAGGACATCTACCACTACTTGGAAAAAATATCATTTTAATTATAACAGGTTATTTGGAATTGGCAAGAATAAAACTCGTTCAAAATAAATTGTAAAAACTAATCTAATGCCACAATTTGTAACTGGCAGTTTGGCACAATGTCTCCCACTACAAATACATGGTAGTTAACCATGTATTTGCAACTAACTATGGTCATGTTTGACAATAGTTGTTAGATGTTTGTTGTTAGTTGTTTGTATGTACTAACTGGTTTGACTAGCTGATTTAATTAGCAGCTTGTGTAAAGTGTTTCAGTGTTTGATAACTTAGTTGTTAGTAGTTGGTTAATCTGTAAAATGATCATTAATTATGACATTGGCATAAAATGATGTACGCTGGTAAGGGTTGTTTCTAATTTTAGACAATATACCAATTATACTCATTTTATACCAACTTCTTCAAATATCTAATACAAAAAGTTCCAACATTGAGCTTTTAAAAATTAGCCTTTTCATCCAACCCACTTCCAAACCTTTCCTAAATAAACACTTCAATTAGCTTTTTGAAATGATCAAACATCTAATTCACCTTAAAGTACTCTTTTTTTTCTCCAACCTCTCTTAACCAAATATACCCTATACTTTTTGCCAATTATAAATTTATAATTACACTAACACATGACAAACATGAATATGTGTTGTATTTTGTACGGGGAGTATTAGCCAACTCTTAAAAAAATTGACCTCGACCTGAAATATTTGACAAACTATTTTAAAAATGGTTGTCCAATTAGTAGCCTTTTCTAAAATTAGCTTTTTGGACATAAACTCTCTTTCAATCCTCTTTCAACCGAAGACTCAATTAGAGCTTTTTGGCCTGAAACCCTATCATAACTAAAACCATCTCTCTCAGTCTCTCCCTCTCGTTCGTTACCTTTGCGACCTCGATCAGTAGTTCAGTACCACCCTCCCCTCCGGCGACTTTACGATCTCACCACCAGAAACCCCGTCGTAAGCCTTCCTACCCGACCCCGCAACCTCACCACCAGGTGCGACCCCTTATCTCATCTTTCTTTTGTTTGTTTGACCATTAAACCCTACTAAATGTTGGTTAATTTTTGTTTTAGAATATGTAAATTTGAGATTTGATTGATTTTTCTGTTAGCATTTGAGTAGACATTGCAATTGGATTGGATAAATGATGTTAGGTCCATGTGTTTATGCAATGAAATCACATTTTTATACGTTGCCCACCAAATGTTCGATAAAATGTCACTGTGCCTTTTCATTTCCTTTTCTTGTATTTCTGCATCAACAGTTTTTGCTAATTGTTTTTCTTAAGAAAATTCTATTCTGTTAAAACATGGGGTTGCATTTATTATTGCTACATTCTTTTAGCTTGCAGTTTTAGAACTATGTTTTAAGGTCATGCTGATTAATTGATGGATAAATTGGCTGCTTGTGCTTCTCAATTTCACTTTTAGTCAGTATGAAAGTTTCAAGCCTGCCCTTTTTTCACTGGATAGGTGTTTGGCTAAGTTGAGTTTAGATTTGTGCTCATGAGGATATCGGTATAAGTTATGGGGGTTCCTTCAGGTTTATCTAATATGTTTCAAATCTGCAAATTATTATCGCTCTGAAACTTGTATATCATGATGATGTCAGGTCTTACATTCTTTGGATTTGACTTTGTCGTTAACTTTGTCGTGTCTTAGAGCAGGATCTCACAGATCCGTTGTATTAGGATCTCGGTTTTCGTTCTTCCCATATTCTATTACATCAAATGGCACCAATAGAATATAGAACTACTCATGGACATTCCCTTTGAAACACTTAGGAATAAAGAAACCTTATAGGAAAGTACCCTCCACCTATGCTCTTGAGGGTTGAAAACCAAAAGAAGAAAAATAGAAAATCATCTCGTCTGTTTCTCATATCATCTACCACTCCCTCTCATGACTATTCCGCCTTTTAGAATTTAAGACAATCAAATATGTGAGATACAACATTTACTTCTCAAAAAACTTCGATAAGCTTCTCTATTTCTAACTTCTAAAACGGTTCTTGTACTTGGAGCACATATATTTCTGTACATACTAGTATACTGCTTAAAGTCTAAATGTCTGACAACTGCTTAAAGTCTAAATGTCTGACAAGGTGTCCACGTATCCAATACTCCCATCCAAATTTTTGCACACATTCTGACACGGTCAAAGGAGTGTCTTGAATTCTTGATTAATATTTTAGACACGACTACCATACAAATTGTCGCATAAAAAATGCGACAATTTTATTAAAAAAAAGATGAAGATTAAAATATTCAATTTTGAATTTAACAACTTAAAACGCAAAAATATTTAAAATCTTCTCGAACATAAACCTACTCAAAAACTATTGGTGTTCTGATGCACCACCAACACCAATAATTAGCTCGTTCCAGCGTTGGTTCATTGATGGAGAGTTGTGCTATCTCATAAATATCGGCATCCACGTCAAGTGTCTCCACCTGAACAAAGATTGAATAACATCAGTATGTTGTTAGGATTTTTATTTTAAAGTTAGACTTTAAATTTTGGATTCTTTTGGCAATTACCATTGTATGCAGTACACCATATTTTGATAATTACCACCTTATAACAAAAATAATTAATTTTTACCACCTTAATTTTTCAAAATTTTTGAAATCACCACTTGCTAATGTTTTCCATCCATTTTTCCGTCATTGTAGGGCCCACTAACCGATTTCTCCTTTTTCCACCCATTCACATCTCTTTCACAATTTCTATCCCTTTCTCTCTCCCCCTTCAATTTGCTTCAATTCCCTAATTTCAAAATTTCAATGGAAACTCTTAATTACTTTAGGTGATTTTTTTTTTTTTTGTAGATTTTTCCTAATTGGTCTCTAAACATCATAAGGCTAATAAAGACGTAAGAATTGTTATTTTCTTCTCCAAAGATCGTGAACTTCAATTTGAAACTCACACATATGTGTTTATTTCCACTAGTTGAATAACAAAAAATGAAACAAAATCAATACCTATTTTCTTGATTATGTTCTTTAGGTAAGCCCCGATAAGGATGATTATGCAAATTCAATAGTATATCGAACCTAAATTTGGAATTTGATTGAGTTTTTTGAAATTAAATAACCAAATTAAAGAAGAGGAATAAATAAATAAGTAGAAATCGTGAAAGAAGAAAAAAAAAGGAAAATAATGAGAAATGGGTTAGTGGGCTCTACATTGACGGAAAAAAAATGACAAAAACTGTTACCAAATGGTGATTACAAAACGTTTGCAAAAATGAAGGTGGTAAAAATTAATTTTTCTTATAAAGTGGTAAGTATGAAAATGTGGTACAGAAAAGGTGGTAAATATGAAAAATCCTTATTTTCTTATGTCCCAATAACGGTAAGGACCAGATTTTTAACTATTCTCCTTCCTTGCCATTACACGAGGTTTGTTATGGCAGGAGTCTAAGTCTTTTGCCCTTTTAGATATCAACTTATTTCTCTTGACCGTTTGAATGTCGTCATAATGGTTACAATTGCGTTCACGACACGAAGATAATTCCGGTTGTGACAATAATCTGAAGGCAAGAGATTGAAGACGGGGAAGGTATGAACTATAATTTACCCACCGAACAATAGGTTGAACATATTGGGCAATAATTATATGAGCTTGATTATTAGGAGGCGCCTCACTAGAAAATGCCCCCAGTCGAGCATGCTTGAAGTCATCTGAATTTGGAGACACCTCAAACATTCATTTCTATTGTTGGAAACCTTTTCATCTTCATTGGGGGCTACCCTTGACTCCTTGAGAATCCTGTTGTACTACCCTTAAGCTAACGTGTGCTATAGAACTTTTGGAAAAAGCGGATGTGCCACACAATGCAAGGGGGTAGAAATTTTGGCTCTCTCTCACATTCTGAATTGCATCATCAGAGGTTCTAGTTAGAATGTCTTTGAGTCTTTCCCTTCATGCTCAAATCAAATGTTCAGTTAGAAGGAAAAGACATTGTAACTAGAACCTCTATTTTTCTAATGCAATTTAGACTCTTACAGACAGACAGGTGGAACAAAATTTCTATCCCCTTGCATTGTTTTGCACACTCGCTTGCTCCAGAGTTCTATAATATACGTAGGCTTAAGAGTAGTACAACGGGATTCTCAAGGGAAACCCCCAATGAAGATTAAGAAGTTTCCAATAATAGAAATGAATGCTTGAGGCGTCTAAGTCCAGATGACGTCAAGCATGCTCGACAAGAGTACGGGGCATTTTCTAGCTAGACGCCTCCTTAAAATCAAACCTATATAATTAACGCCGGAGATGATGTAGAACTTATTGTTTGGTGGACAAATTATGGTTCATCCCTTCCCCATCTTCGATCTCTTGCCTTCAAATTATTGTCACAACCTACATCATCTTCGTGTTGTGCACGCAATTGAAGCTATTATGATAACTGTCACACGGTCAAGAGAAATATGTTTACATTTGAAACAGAAAAAACTTATTCTATTGCCATAACAACCTTTGTGTAATGGCAAGGAAGGAGGATAGTTACAAATGTGGTCCTAGCCGATAATGGGATATAGGTAAAGTTTTAAATTCTAACTTTTTATACATATATATAAAAGTTAATCTTAACAACTTACTAATGTTATTCAATCTTTGTTCATGTGGACTTACGTTTGACGTGGATCGGTGGATGTCGATGTTTGTGAGATAACACAACTCTCCATTAATGAACCAGAGTTGGAACGAGCTATTGTAGGGGGTGTTTCTCGCAACTTCGACTTTGAAAGAGTGATTGTTATGAACTTTTACAAACCACTTTAACCATTAATTGTGCACAAATAATTCGATCTTTGCAGTCCACCCCCCTAAGGGATTTGTTTGAGTTTATGCCTAATCACTTCGATGTTAAACACTTTGGAGGGTTAGAAAAAGCTTACGACTTTGAATTTTGATATTTCGAAAGAGTCACCACCAAACATTTATGGTCCGTCTTGAAGAACAAAAATGACTCCGATAAGACACGGTCTTTGAAACAGAAAAAAGAGAACGGGAACGAGTACATCTATTTCTCTTTTGACATAAGGTGTATGCAATTTCGAAAGCAAGAATCATTTTACAACAATCCCAGCATGACAGTATTTAGGTCGGTTTGAACATGCATTTTTTAGAACTAGAATTTGTGACCACTTCGATTAAGATTAAATAAGGGAACTATGACCAGTTTGTCCAAAATTATCTTATTAGTTGTGATGGAACTTTGTAGGTCTTTGATTAGCATGGTAATGGTGAAGCACATAAACATTAAATAGGAAATGTAAGTGCGGAAAATTAGATTATTACAACAATTAGAATGAATATGCGGTAAAATAAAGCAAAAAAGTGCAACAATCGAAATAAAGCAAATAAATGACAGTAATAATAACAAAAAATCGAAATAAATAAAGAAAAATAAAGCTTTTGAAGACTTTGAGTTTTGAAGAAAGAAATATTCAAGTGTGACATTTCAATTTTGAGCTCTTCGAAAACATGGAATAATCTAGTTTTAAGAGGGTTGAACTTAAAATTTCATCGATTTTAAGAAAATGAGTGTTGAAGCATGACACTTTAATCTTTACTTGAAACAAACGTAGTTTAAGGGAAGAGGTTTCTCTTCTTTAAACATCATTGGACATAGAAACTTTGAACTTAGAACTTGAACTTTGAATTTAAAATTTAGAAATTAAGAGACTTAATGTTAAAAGAAAGGAATGTTCAAGCATGACATCCAAACTTTTATTTACTTTAAATAATTTGTAAGTTCTAGTTTAAAGAAGTGTTTGATCATCTTTAAACATCTTTAAACATTGAAAACTTTGAACATGAAACTTTGGAAATAATTAATTTTAAAATTGAAATCAGAACCTTGAAATCATTTGAAGGGAACATTCAAGTTTGATGTCCCTCTAAAGAAAACTCCTAAGTGCTCATATTTTCCTAGTTTAGGAGGGTTTTGAACCCTACACGAACATCATTAGATTTGCATAAACTTTGAAATGGCTTGAAATTAAAAGAAAGGTAGAAGATTAGAATGAGATTAAGCCCTCGAAAATTACCTAGATCCCTTAGGTTGAACTTCCCTTGCTTGGGCTCCAATATTGCTAAGGAATTTAGAACTTTGAATCGATTTTTGAAAGTTTTGATGTTTAGAATAAGTGTTGCGCCTAATTAGGGTCACTAATTGGAGAGAGTTTTGATGATTTTTAAATTTTGAATTGCTCTCCCCTTGGTTTGAAAAAATGAGGGTATTTATAGGAGATTTGGATTTAGAGTTGTTGGTTGGCAGAGCGCACACGATGCGATGCGCGCAGTCATTGCTGGTCTTTGACCATATTGTACGCGTGCCTTCAAATGTTGGTCCTTTGAGGGGATTGATACGTTTTGCATTAAATGCTTGTATTGATTACTAGTACTTTGATGTTTTTTCTTGCTCTCCAAGTTATGGAAAGGGTTGCCTATTGATGGTTTTCGGAAAAAGGTGCTTGCAATTGATTTTTTCGGAAATGCTTTTTTGCTCAGCTTTCTGAGTTGGCGCTAGGGTTTTCAATTCGCAACTTGAGTTTTTTGAATTTGGGTCTTTGACTTAGATTTTGGACTCGGGTTTTGGAAATTGGACTCGGAATTTGGGTTTTTGTAACTTTGAATTTGGAATTGGAAATTGGATTTTGTAACTTCGAATTGGAAATTGAATTTTTGGATTTGGGAATTAATTATTATCAATATTGTCGCATCCGCTCAGAATTGTCCAACTAAAAGTTGACTACCGGTATCGTCATCGTACTTTTAGGGGGAGACTTAATTTTGGTGTCTAGAGTGGTGCAGTAGAAGACTAGTTGTTTTATTGAGTAATTTTTATGTTTTAAGACTTTGAGTAGTTTTTATGTTTGAGAAGTTTCCACAAACAATATATTTTATGTTTTAAGTTGTTAAATTTTGCAATTGGATATTTTGAGTTATTTTTGTTAATATTTTGATCTTGATCTTTTTAAATTTATCAACTATTTGTTATACATAAAAAGTGTCAATTTTTTTTGTCCGCCACTTTAGTAGCCGTGTCTAAAAACACTCCTTTTACCGTGTCTGCAAAACTTTGGATCGGAGTGTCGGATGCCACCTTGTCAGACATGGCACAAATCCGTGTCTGAGGAACATAGGTTGTCTTCTCTATCTTCTCCACTTTCAAGGATTTAGATTTTGGCCTTTTGGGGTGCTTGTCTCTAATTTTGTAACATTTGGTTATATTTTATCGTTGACTCCAGCTTAAGATGCGGACTTGCATTATGTCGTTGTAACTTGATATGTTTGAGGCCATTAGAACTTTTATCCTTGGAGACTTCTGTTAGTATGTATAATTGCCTACCTGCTACTTATCTTGTTTGCTGATGATATAAGTTTGTAATTTGTATTACAATGTTCAATTTTCTGACCTGATGATTTATAATCTAAAGCCTTAAAATACTTTCTCCATTTGCTGCTAGATGACTTGGATGTCTGATTTTTGAATAGCTATTTCACGAAATCTGTAGTTATTCTGAAGAGAGACTTGATGGGTCCAAGATGGAAAGGGAAGGGTGCTGAAGCTAAAGGCCTTGCAGAACCAATGTCAGAAATAGTTTCAGCACTTCAAACATGCCTAACCACATCAGAATGCAAGGGGTCGATATCTGGAAGCAAGGTTTTGTTTGAAGCAGATACCGAACAATCTGAGCTTCTGAACCGTGCATGTTTTGGTCGGGTTATTAGAGCCAGCCAGAAGGATGAACATTGGTACGAACTTACTTTACAAGAGGCTTTTTATTTGTGCTATATGTTGAAGTGTTTGAAAATTGAAGGAGACGATGGCGTTGTGAAAAGTTACGAAGAGTTGTGGCAGTTTATGATTTCAAAATTTGAAATGTTTCCTGAGTTTTTCAAGGCTTACTCTCATATGAGAATGAATAATTGGGTAGTGAAATCAGGATCTCAATATGGTGTTGATTATGTTGCTTATCGCCACCATCCAGCTTTGGTCCATTCAGAATATGCAATTCTTGTACTATCAGGAAGAAAAGATTGTGGACGGCTAAAGTTATGGTCCGATATGTATGGCACAGTTCGGCTTTGTGGTGGTGTTGCCAAGACATTGCTAGTTTTACATGTTTTGGGCAATAATAACGACACTAGTTCTGCATTATGCTTGAACAATTACGATATAGAAACACGTACAATCTCTAGATGGATTCCAGAGCAAACTCGTGAAAAAAAAGAATGAGTCTACAATGAACGTCATGTATTACTATGTATCGGAAGTGATTTGTACTGCTATGTACTACTAAGAAATTACTAATTGATTACTTTTATAAGGATTAATTATTAAGTAAACCTTCTTCTCTCTCAAAAAATTACTTCTGCTTTTCTCTCTCTCCTTCAGTTTCCCCAACCTTCTCTCCTATTCTTCTCTCCCATTCT

mRNA sequence

ATGGTTATTACATCCGGATCCGGGTCATGTTGGTATCATGTCTCTCCCTCTCGTTCGTTACCTTTGCGACCTCGATCAGTAGTTCAGTACCACCCTCCCCTCCGGCGACTTTACGATCTCACCACCAGAAACCCCGTCGTAAGCCTTCCTACCCGACCCCGCAACCTCACCACCAGCTATTTCACGAAATCTGTAGTTATTCTGAAGAGAGACTTGATGGGTCCAAGATGGAAAGGGAAGGGTGCTGAAGCTAAAGGCCTTGCAGAACCAATGTCAGAAATAGTTTCAGCACTTCAAACATGCCTAACCACATCAGAATGCAAGGGGTCGATATCTGGAAGCAAGGTTTTGTTTGAAGCAGATACCGAACAATCTGAGCTTCTGAACCGTGCATGTTTTGGTCGGGTTATTAGAGCCAGCCAGAAGGATGAACATTGGTACGAACTTACTTTACAAGAGGCTTTTTATTTGTGCTATATGTTGAAGTGTTTGAAAATTGAAGGAGACGATGGCGTTGTGAAAAGTTACGAAGAGTTGTGGCAGTTTATGATTTCAAAATTTGAAATGTTTCCTGAGTTTTTCAAGGCTTACTCTCATATGAGAATGAATAATTGGGTAGTGAAATCAGGATCTCAATATGGTGTTGATTATGTTGCTTATCGCCACCATCCAGCTTTGGTCCATTCAGAATATGCAATTCTTGTACTATCAGGAAGAAAAGATTGTGGACGGCTAAAGTTATGGTCCGATATGTATGGCACAGTTCGGCTTTGTGGTGGTGTTGCCAAGACATTGCTAGTTTTACATGTTTTGGGCAATAATAACGACACTAGTTCTGCATTATGCTTGAACAATTACGATATAGAAACACGTACAATCTCTAGATGGATTCCAGAGCAAACTCGTGAAAAAAAAGAATGAGTCTACAATGAACGTCATGTATTACTATGTATCGGAAGTGATTTGTACTGCTATGTACTACTAAGAAATTACTAATTGATTACTTTTATAAGGATTAATTATTAAGTAAACCTTCTTCTCTCTCAAAAAATTACTTCTGCTTTTCTCTCTCTCCTTCAGTTTCCCCAACCTTCTCTCCTATTCTTCTCTCCCATTCT

Coding sequence (CDS)

ATGGTTATTACATCCGGATCCGGGTCATGTTGGTATCATGTCTCTCCCTCTCGTTCGTTACCTTTGCGACCTCGATCAGTAGTTCAGTACCACCCTCCCCTCCGGCGACTTTACGATCTCACCACCAGAAACCCCGTCGTAAGCCTTCCTACCCGACCCCGCAACCTCACCACCAGCTATTTCACGAAATCTGTAGTTATTCTGAAGAGAGACTTGATGGGTCCAAGATGGAAAGGGAAGGGTGCTGAAGCTAAAGGCCTTGCAGAACCAATGTCAGAAATAGTTTCAGCACTTCAAACATGCCTAACCACATCAGAATGCAAGGGGTCGATATCTGGAAGCAAGGTTTTGTTTGAAGCAGATACCGAACAATCTGAGCTTCTGAACCGTGCATGTTTTGGTCGGGTTATTAGAGCCAGCCAGAAGGATGAACATTGGTACGAACTTACTTTACAAGAGGCTTTTTATTTGTGCTATATGTTGAAGTGTTTGAAAATTGAAGGAGACGATGGCGTTGTGAAAAGTTACGAAGAGTTGTGGCAGTTTATGATTTCAAAATTTGAAATGTTTCCTGAGTTTTTCAAGGCTTACTCTCATATGAGAATGAATAATTGGGTAGTGAAATCAGGATCTCAATATGGTGTTGATTATGTTGCTTATCGCCACCATCCAGCTTTGGTCCATTCAGAATATGCAATTCTTGTACTATCAGGAAGAAAAGATTGTGGACGGCTAAAGTTATGGTCCGATATGTATGGCACAGTTCGGCTTTGTGGTGGTGTTGCCAAGACATTGCTAGTTTTACATGTTTTGGGCAATAATAACGACACTAGTTCTGCATTATGCTTGAACAATTACGATATAGAAACACGTACAATCTCTAGATGGATTCCAGAGCAAACTCGTGAAAAAAAAGAATGA

Protein sequence

MVITSGSGSCWYHVSPSRSLPLRPRSVVQYHPPLRRLYDLTTRNPVVSLPTRPRNLTTSYFTKSVVILKRDLMGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRACFGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPEFFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24189	Spo24189	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24189.1	Spo24189.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24189.1.exon.1	Spo24189.1.exon.1	exon
Spo24189.1.exon.2	Spo24189.1.exon.2	exon
Spo24189.1.exon.3	Spo24189.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24189.1.CDS.1	Spo24189.1.CDS.1	CDS
Spo24189.1.CDS.2	Spo24189.1.CDS.2	CDS
Spo24189.1.CDS.3	Spo24189.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24189.1.utr3p.1	Spo24189.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo24189.1 vs. NCBI nr
Match: gi|902192760|gb|KNA12109.1| (hypothetical protein SOVF_128620 [Spinacia oleracea])

HSP 1 Score: 485.7 bits (1249), Expect = 5.800e-134
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC
Sbjct: 1   MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE
Sbjct: 61  FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 252
           FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY
Sbjct: 121 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 180

Query: 253 GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE 307
           GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE
Sbjct: 181 GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE 234

[Close]

BLAST of Spo24189.1 vs. NCBI nr
Match: gi|902111686|gb|KNA03769.1| (hypothetical protein SOVF_205940 [Spinacia oleracea])

HSP 1 Score: 419.9 bits (1078), Expect = 3.900e-114
Identity = 205/239 (85.77%), Postives = 220/239 (92.05%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAK LAEPMSEIV ALQTCLTTS+CKG + GS+VLF+ADTEQSELLNRAC
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVLALQTCLTTSDCKGLLFGSRVLFKADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR   ASQKD+HWYELTLQEAFYLCYMLKCLKIEG DGVVK+YEELW+ +IS+ EMFPE
Sbjct: 61  FGR---ASQKDKHWYELTLQEAFYLCYMLKCLKIEGGDGVVKTYEELWRLIISEIEMFPE 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD----CGRLKLW 252
           FFKAY+H+RMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD     GRLKLW
Sbjct: 121 FFKAYTHLRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDSGNSSGRLKLW 180

Query: 253 SDMYGTVRLCGGVAKTLLVLHVLGNN--NDTSSALCLNNYDIETRTISRWIPEQTREKK 306
           SD+YGT+RLCGGVAKTLLVLHVLGNN  NDT+S +CL NYDIETRTISRWIPEQTREKK
Sbjct: 181 SDLYGTIRLCGGVAKTLLVLHVLGNNNTNDTNSPVCLKNYDIETRTISRWIPEQTREKK 236

[Close]

BLAST of Spo24189.1 vs. NCBI nr
Match: gi|731339685|ref|XP_010680990.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 370.9 bits (951), Expect = 2.100e-99
Identity = 178/235 (75.74%), Postives = 201/235 (85.53%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWKGK +EAK LAEPMSEIV ALQ+ LTTS+CKG ISG +VL EADTEQSELLNRAC
Sbjct: 1   MAPRWKGKDSEAKALAEPMSEIVLALQSSLTTSKCKGLISGCRVLIEADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR+I  SQKD  WYELTL EAFYLCY L CLKI GDDGVVKS +ELW FMIS+ +MFP+
Sbjct: 61  FGRLIVTSQKDRQWYELTLHEAFYLCYTLNCLKIIGDDGVVKSNKELWHFMISEVDMFPK 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCG--RLKLWSD 252
           FF+AYSH+R +NWVV+SGSQYGVDYV YRHHPALVHSEYA++VLS R      RLKLWSD
Sbjct: 121 FFQAYSHLRKSNWVVRSGSQYGVDYVVYRHHPALVHSEYAVIVLSERDGISNERLKLWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKK 306
           +YGT+RLCGGVAKTLLVLHVLG +N+T S +CL N ++E RTISRWIPEQTREK+
Sbjct: 181 LYGTIRLCGGVAKTLLVLHVLGISNETDSPICLENCNVEARTISRWIPEQTREKR 235

[Close]

BLAST of Spo24189.1 vs. NCBI nr
Match: gi|731364194|ref|XP_010693840.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 363.6 bits (932), Expect = 3.400e-97
Identity = 174/235 (74.04%), Postives = 197/235 (83.83%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWKGK +EAK LAEPMSE V ALQ+ LTTS+CKG ISG +VL EADT+QSELLNRAC
Sbjct: 1   MAPRWKGKDSEAKALAEPMSETVLALQSSLTTSKCKGLISGRRVLIEADTKQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++  SQKD  WYELTLQEAFY+CY LKCLKI GDDGVVKS EELW  MIS+ + FP+
Sbjct: 61  FGRLVITSQKDRQWYELTLQEAFYMCYTLKCLKIVGDDGVVKSNEELWNLMISEVDKFPK 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCG--RLKLWSD 252
           FF+AYSH+R +NWVV+SGSQYGVDYV YRHHPALVHSEYA++VLS R      RLKLWSD
Sbjct: 121 FFQAYSHLRKSNWVVRSGSQYGVDYVVYRHHPALVHSEYAVIVLSERNSSSSERLKLWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKK 306
            YGT+RLCGGVAKTLLVLHVLG +N+T S +CL N  +E  TISRWIPEQTREK+
Sbjct: 181 FYGTIRLCGGVAKTLLVLHVLGISNETDSPICLENCRMEAHTISRWIPEQTREKR 235

[Close]

BLAST of Spo24189.1 vs. NCBI nr
Match: gi|225435209|ref|XP_002284873.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis vinifera])

HSP 1 Score: 308.9 bits (790), Expect = 9.800e-81
Identity = 145/233 (62.23%), Postives = 184/233 (78.97%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAK LAEPMSEIVS LQ+ LT S+ +G +SG  VL EA  EQ+ELLNR+C
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR +  ++KD+ W++L+++EAFYLC+ L CLKI G+D  +K+ EELWQ+M S+ E FP+
Sbjct: 61  FGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETFPD 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD--CGRLKLWSD 252
           F+ AYSH+R+ NWVV+SGSQYGVD+VAYRHHPALVHSEYA+LVLS   +   GRL++WSD
Sbjct: 121 FYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEENENANGRLRVWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTRE 304
              T+RLCG VAKTLLV+H+  N +  ++ LCL  Y +E RTI+RW  EQ RE
Sbjct: 181 FDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233

[Close]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXX2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_128620 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 4.100e-134
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC
Sbjct: 1   MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE
Sbjct: 61  FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 252
           FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY
Sbjct: 121 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 180

Query: 253 GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE 307
           GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE
Sbjct: 181 GTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKKE 234

[Close]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q947_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205940 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.700e-114
Identity = 205/239 (85.77%), Postives = 220/239 (92.05%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAK LAEPMSEIV ALQTCLTTS+CKG + GS+VLF+ADTEQSELLNRAC
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVLALQTCLTTSDCKGLLFGSRVLFKADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR   ASQKD+HWYELTLQEAFYLCYMLKCLKIEG DGVVK+YEELW+ +IS+ EMFPE
Sbjct: 61  FGR---ASQKDKHWYELTLQEAFYLCYMLKCLKIEGGDGVVKTYEELWRLIISEIEMFPE 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD----CGRLKLW 252
           FFKAY+H+RMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD     GRLKLW
Sbjct: 121 FFKAYTHLRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDSGNSSGRLKLW 180

Query: 253 SDMYGTVRLCGGVAKTLLVLHVLGNN--NDTSSALCLNNYDIETRTISRWIPEQTREKK 306
           SD+YGT+RLCGGVAKTLLVLHVLGNN  NDT+S +CL NYDIETRTISRWIPEQTREKK
Sbjct: 181 SDLYGTIRLCGGVAKTLLVLHVLGNNNTNDTNSPVCLKNYDIETRTISRWIPEQTREKK 236

[Close]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4W1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138520 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.500e-99
Identity = 178/235 (75.74%), Postives = 201/235 (85.53%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWKGK +EAK LAEPMSEIV ALQ+ LTTS+CKG ISG +VL EADTEQSELLNRAC
Sbjct: 1   MAPRWKGKDSEAKALAEPMSEIVLALQSSLTTSKCKGLISGCRVLIEADTEQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR+I  SQKD  WYELTL EAFYLCY L CLKI GDDGVVKS +ELW FMIS+ +MFP+
Sbjct: 61  FGRLIVTSQKDRQWYELTLHEAFYLCYTLNCLKIIGDDGVVKSNKELWHFMISEVDMFPK 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCG--RLKLWSD 252
           FF+AYSH+R +NWVV+SGSQYGVDYV YRHHPALVHSEYA++VLS R      RLKLWSD
Sbjct: 121 FFQAYSHLRKSNWVVRSGSQYGVDYVVYRHHPALVHSEYAVIVLSERDGISNERLKLWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKK 306
           +YGT+RLCGGVAKTLLVLHVLG +N+T S +CL N ++E RTISRWIPEQTREK+
Sbjct: 181 LYGTIRLCGGVAKTLLVLHVLGISNETDSPICLENCNVEARTISRWIPEQTREKR 235

[Close]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBQ7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068740 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.300e-97
Identity = 174/235 (74.04%), Postives = 197/235 (83.83%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWKGK +EAK LAEPMSE V ALQ+ LTTS+CKG ISG +VL EADT+QSELLNRAC
Sbjct: 1   MAPRWKGKDSEAKALAEPMSETVLALQSSLTTSKCKGLISGRRVLIEADTKQSELLNRAC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++  SQKD  WYELTLQEAFY+CY LKCLKI GDDGVVKS EELW  MIS+ + FP+
Sbjct: 61  FGRLVITSQKDRQWYELTLQEAFYMCYTLKCLKIVGDDGVVKSNEELWNLMISEVDKFPK 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCG--RLKLWSD 252
           FF+AYSH+R +NWVV+SGSQYGVDYV YRHHPALVHSEYA++VLS R      RLKLWSD
Sbjct: 121 FFQAYSHLRKSNWVVRSGSQYGVDYVVYRHHPALVHSEYAVIVLSERNSSSSERLKLWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTREKK 306
            YGT+RLCGGVAKTLLVLHVLG +N+T S +CL N  +E  TISRWIPEQTREK+
Sbjct: 181 FYGTIRLCGGVAKTLLVLHVLGISNETDSPICLENCRMEAHTISRWIPEQTREKR 235

[Close]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Match: F6GTX7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03380 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 6.800e-81
Identity = 145/233 (62.23%), Postives = 184/233 (78.97%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           MGPRWKGKGAEAK LAEPMSEIVS LQ+ LT S+ +G +SG  VL EA  EQ+ELLNR+C
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR +  ++KD+ W++L+++EAFYLC+ L CLKI G+D  +K+ EELWQ+M S+ E FP+
Sbjct: 61  FGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETFPD 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD--CGRLKLWSD 252
           F+ AYSH+R+ NWVV+SGSQYGVD+VAYRHHPALVHSEYA+LVLS   +   GRL++WSD
Sbjct: 121 FYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEENENANGRLRVWSD 180

Query: 253 MYGTVRLCGGVAKTLLVLHVLGNNNDTSSALCLNNYDIETRTISRWIPEQTRE 304
              T+RLCG VAKTLLV+H+  N +  ++ LCL  Y +E RTI+RW  EQ RE
Sbjct: 181 FDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233

[Close]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Match: SEN22_ARATH (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.000e-66
Identity = 124/233 (53.22%), Postives = 166/233 (71.24%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWK KGAEAK LAEP+S+ VS LQ  L  +E  G++S   VL   + EQ+ELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++ +++K + W +L+ +EAF+L Y LKC+KI      +++  + W +M SK   FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 252
           FFKAYSH+R  NWV++SG QYGVD+VAYRHHP+LVHSEY++LV SG  D  RL++WSD++
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD--RLRVWSDIH 180

Query: 253 GTVRLCGGVAKTLLVLHVLGN--NNDTSSALCLNNYDIETRTISRWIPEQTRE 304
             VRL G VAKTLL L+V GN    D +  +CL N+ +E +TISRW PE +RE
Sbjct: 181 CAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 231

[Close]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Match: SEN21_ARATH (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.000e-61
Identity = 120/234 (51.28%), Postives = 165/234 (70.51%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWK KGAEAK LAEP+S+ VS L++ LT +E  G +S   VL   ++E++ELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++  ++KD+ W +L+ +EAF+L Y LKC+KI      +++  +LW+ M S  + F  
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDFAI 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLS-GRKDCGRLKLWSDM 252
            +KAYSH+R  NW+V+SG QYGVD+V YRHHP+LVHSEYA+LV S G  D  RLK+WSD+
Sbjct: 121 LYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND--RLKVWSDI 180

Query: 253 YGTVRLCGGVAKTLLVLHV--LGNNNDTSSALCLNNYDIETRTISRWIPEQTRE 304
           + +VRL G VAK+LLVL+V    N    +  LCL +Y +E +TI RW PE +RE
Sbjct: 181 HCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232

[Close]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Match: SEN2_ORYSJ (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.300e-53
Identity = 109/246 (44.31%), Postives = 153/246 (62.20%), Query Frame = 1


		  
Query: 71  DLMGPRWK----GKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISG--SKVLFEADTEQ 130
           DL GPRWK    GK   +   A PMS IVS L+    +S+    +SG     +     EQ
Sbjct: 2   DLPGPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQ 61

Query: 131 SELLNRACFGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMI 190
           + +LNRA FG  I  +   +HW++L+ +E FYLC+ L C++++  D    S  ELW +  
Sbjct: 62  AVILNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFR 121

Query: 191 SKFEMFPEFFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKD--- 250
           S  E FPE +KAY+H+R+ NWVV+SG QYG D+VAYRHHPALVHSE+A++V+    +   
Sbjct: 122 SGSESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGN 181

Query: 251 -CGRLKLWSDMYGTVRLCGGVAKTLLVLHVLGNNN-DTSSALCLNNYDIETRTISRWIPE 306
            CGRL++WSD+   +R  G VAKTLLVL +  ++  + SS  CL    +  RTI+RWI +
Sbjct: 182 RCGRLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQ 241

[Close]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Match: SEN2_RAT (tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.000e-14
Identity = 46/169 (27.22%), Postives = 83/169 (49.11%), Query Frame = 1


		  
Query: 146 WYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPEFFKAYSHMRMNNW 205
           + +L+L+EAF+L Y L CL I  +   + +  +LWQ   +    F   + AY + R   W
Sbjct: 294 YLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKGW 353

Query: 206 VVKSGSQYGVDYVAYRHHPALVHSEYAILV-LSGRKDCGRLK---LWSDMYGTVRLCGGV 265
           V K G +YG D + YR  P   H+ Y++++ L      G L+    W  +    R+ G V
Sbjct: 354 VPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDNFEGSLRRPFSWKSLAALSRVSGNV 413

Query: 266 AKTLLVLHVLG----NNNDTSSALCLNNYDIETRTISRWIPEQTREKKE 307
           +K L++ +++      N D  +  C+    ++   +SRW+  + R  ++
Sbjct: 414 SKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSDQD 461

[Close]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Match: SEN2_MOUSE (tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.000e-13
Identity = 45/169 (26.63%), Postives = 84/169 (49.70%), Query Frame = 1


		  
Query: 146 WYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPEFFKAYSHMRMNNW 205
           + +L+L+EAF+L Y L CL I  +   + +  +LWQ   +    F   + AY + R   W
Sbjct: 291 YLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKGW 350

Query: 206 VVKSGSQYGVDYVAYRHHPALVHSEYAILV-LSGRKDCGRLK---LWSDMYGTVRLCGGV 265
           V K G +YG D + YR  P   H+ Y++++ L      G L+    W  +    R+ G V
Sbjct: 351 VPKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGNV 410

Query: 266 AKTLLVLHVLGNNNDTSSAL----CLNNYDIETRTISRWIPEQTREKKE 307
           +K L++ +++  +  T+  +    C+    ++   +SRW+  + R  ++
Sbjct: 411 SKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSDQD 458

[Close]

BLAST of Spo24189.1 vs. TAIR (Arabidopsis)
Match: AT5G60230.2 (splicing endonuclease 2)

HSP 1 Score: 253.1 bits (645), Expect = 2.200e-67
Identity = 124/233 (53.22%), Postives = 166/233 (71.24%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWK KGAEAK LAEP+S+ VS LQ  L  +E  G++S   VL   + EQ+ELL+R C
Sbjct: 6   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 65

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++ +++K + W +L+ +EAF+L Y LKC+KI      +++  + W +M SK   FP 
Sbjct: 66  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 125

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMY 252
           FFKAYSH+R  NWV++SG QYGVD+VAYRHHP+LVHSEY++LV SG  D  RL++WSD++
Sbjct: 126 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD--RLRVWSDIH 185

Query: 253 GTVRLCGGVAKTLLVLHVLGN--NNDTSSALCLNNYDIETRTISRWIPEQTRE 304
             VRL G VAKTLL L+V GN    D +  +CL N+ +E +TISRW PE +RE
Sbjct: 186 CAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 236

[Close]

BLAST of Spo24189.1 vs. TAIR (Arabidopsis)
Match: AT3G45590.1 (splicing endonuclease 1)

HSP 1 Score: 236.9 bits (603), Expect = 1.700e-62
Identity = 120/234 (51.28%), Postives = 165/234 (70.51%), Query Frame = 1


		  
Query: 73  MGPRWKGKGAEAKGLAEPMSEIVSALQTCLTTSECKGSISGSKVLFEADTEQSELLNRAC 132
           M PRWK KGAEAK LAEP+S+ VS L++ LT +E  G +S   VL   ++E++ELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 133 FGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQFMISKFEMFPE 192
           FGR++  ++KD+ W +L+ +EAF+L Y LKC+KI      +++  +LW+ M S  + F  
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDFAI 120

Query: 193 FFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLS-GRKDCGRLKLWSDM 252
            +KAYSH+R  NW+V+SG QYGVD+V YRHHP+LVHSEYA+LV S G  D  RLK+WSD+
Sbjct: 121 LYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND--RLKVWSDI 180

Query: 253 YGTVRLCGGVAKTLLVLHV--LGNNNDTSSALCLNNYDIETRTISRWIPEQTRE 304
           + +VRL G VAK+LLVL+V    N    +  LCL +Y +E +TI RW PE +RE
Sbjct: 181 HCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232

[Close]

BLAST of Spo24189.1 vs. TAIR (Arabidopsis)
Match: AT3G45577.1 (tRNA-intron endonucleases)

HSP 1 Score: 76.3 bits (186), Expect = 3.800e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1


		  
Query: 122 TEQSELLNRACFGRVIRASQKDEHWYELTLQEAFYLCYMLKCLKIEGDDGVVKSYEELWQ 181
           +EQ+ELL+R CFGR++  ++KD+ W +L+ +EAF+L Y LKC+KI      + +  +LW+
Sbjct: 36  SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGRSLVNGVDLWR 95

Query: 182 FMISKFEMFPEFFKAYSHMRMNN 205
            + S    F   +KAYSH+R  N
Sbjct: 96  SIRSFKPNFTILYKAYSHLRSKN 118

The following BLAST results are available for this feature:

BLAST of Spo24189.1 vs. NCBI nr
BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
BLAST of Spo24189.1 vs. TAIR (Arabidopsis)

BLAST of Spo24189.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902192760\|gb\|KNA12109.1\|	5.8e-134	100.	hypothetical protein SOVF_1286...	[more]
gi\|902111686\|gb\|KNA03769.1\|	3.9e-114	85.7	hypothetical protein SOVF_2059...	[more]
gi\|731339685\|ref\|XP_010680990.1\|	2.1e-99	75.7	PREDICTED: tRNA-splicing endon...	[more]
gi\|731364194\|ref\|XP_010693840.1\|	3.4e-97	74.0	PREDICTED: tRNA-splicing endon...	[more]
gi\|225435209\|ref\|XP_002284873.1\|	9.8e-81	62.2	PREDICTED: tRNA-splicing endon...	[more]

BLAST of Spo24189.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QXX2_SPIOL	4.1e-134	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9Q947_SPIOL	2.7e-114	85.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4W1_BETVU	1.5e-99	75.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8BBQ7_BETVU	2.3e-97	74.0	Uncharacterized protein OS=Bet...	[more]
F6GTX7_VITVI	6.8e-81	62.2	Putative uncharacterized prote...	[more]

BLAST of Spo24189.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SEN22_ARATH	4.0e-66	53.2	tRNA-splicing endonuclease sub...	[more]
SEN21_ARATH	3.0e-61	51.2	tRNA-splicing endonuclease sub...	[more]
SEN2_ORYSJ	1.3e-53	44.3	Probable tRNA-splicing endonuc...	[more]
SEN2_RAT	6.0e-14	27.2	tRNA-splicing endonuclease sub...	[more]
SEN2_MOUSE	3.0e-13	26.6	tRNA-splicing endonuclease sub...	[more]

BLAST of Spo24189.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G60230.2	2.2e-67	53.2	splicing endonuclease 2	[more]
AT3G45590.1	1.7e-62	51.2	splicing endonuclease 1	[more]
AT3G45577.1	3.8e-14	42.1	tRNA-intron endonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006676	tRNA-splicing endonuclease	PANTHER	PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 52..306 score: 3.4
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 194..270 score: 5.4
IPR006677	tRNA intron endonuclease, catalytic domain-like	unknown	SSF53032	tRNA-intron endonuclease catalytic domain-like	coord: 190..275 score: 4.01
IPR006678	tRNA intron endonuclease, N-terminal	PFAM	PF02778	tRNA_int_endo_N	coord: 108..180 score: 4.2
IPR011856	tRNA endonuclease-like domain	GENE3D	3.40.1350.10		coord: 190..276 score: 3.4
None	No IPR available	PANTHER	PTHR21227:SF0	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 52..306 score: 3.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
cellular_component	GO:0000214	tRNA-intron endonuclease complex
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000213	tRNA-intron endonuclease activity