Spo24276.1 (mRNA) | SpinachBase

Overview


Name	Spo24276.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Zinc finger family protein
Location	SpoScf_02517 : 28142 .. 30553 (-)
Sequence length	1254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTCTCTTACACTCCCTCTATTCAACTGAGCTGCCTCAAATCTTTTCGAGAATCGAGGCATTTCTGCATGTTATAAAAACCATGCTTACCCATTCACAAACACCAACCCATCCGTTTTCCTCTCTTTTAAACCCTAATTTTGCGTTCTCTTTCCCAAACGCACAACTTCTTCTTCTACCATATCTTCAAGGTAATCTTTCTCCTCTTTTTTTCTTATAATTTCCCTCCATTTTTTTTCTTAATTAATTGAAGTTATGTACTACATAAACTATAGAGGATGCAAGAAATATAACATTTTTTGTGCACTTTTTTATTATTTTATATTTAAAGGGGGAAAATAATGCAAGTTGGTTGTTTTATTGCTCCTAAATTTGTCATTTTCTAAAAATTTAATGAAATGTATTATCCTTAAAACAAGGGGTTCTGGTCATTATATTATATTACAATAATTCTTCCATGGCGTGGTCTCTTTTAAGAGTGATAAGAGTGGATCTTACATAGTTTTCCACTAGAATTTATTTAGCAAAATTTAAAACACAAAAGAAAAAGCAAAAGGAAAAGAAAAAGAAAAAACAATGGGCAAATATCTTTTGTACGATTACCGTTTTGGTTTGCTTGTCTTGTCTTAGCATTTCCTAACATTTTCCACTATCAATAACAATTAAATAACAAACACACCTAATAAATTTCTAGTCATTACGGAGTATTTAAAATCGAAACTTGTTTATGTCATTGTCTGTTTACTGTTTATTAGTTTATGGTGTTACTTAAAAGAGATTTTGACTAAATATATTGATTTGTTTATTTGTTGTATAGGGAAAGTGTAGGAGAAACAAAATGAACAGGCCAGGTGATTGGAACTGTAGGTCATGCAGCCACTTGAACTTCCAGAGGAGGGACTCGTGCCAGCGCTGTGGGGACCAACGTCCTGATGGCCGAGGAAGCGGTGGCGGCAACGGTGACTTCGGAAGCTTTGGAGGGAGGTCAGGTGGGCCCTCCTTTGCTGGGGGATTTGCGGGTCCTGATGTTAGGCCTGGTGATTGGTATTGTAGCATTGGCAACTGTGGGGCCCACAACTTTGCTAGTAGGTCTAGCTGCTTCAAGTGTGGAGCTTACAAGGAGGAAGCTGCCTCCGCTGATATGGGCCGCTCACGTGGATTCTCCTTCGGTACCGGACTTGGCGGTGCCGGACTTGCCGTTGGTGGTCTTGGCGGTGGTGTACCTGGTGCTAGCGGCCGCTCTGGCTGGAAATCCGGTGACTGGATTTGCACTAGGTAACTATTCTCCTACTATTTTATACAAACATTTTTACCTTTTTATTTTAATGGAAAAGAATTATACTTGTGTACAGTGTACATTATACGTATACCACTACATTTTTGTATTATGTTGTCTACATTTTCTATAGATAAAGAAAAATTACATTTTGGAACTGATACATGTAAGAAAGGTGAACCTTGCGAAAAGTTGCTAGCTATTTTACTGGTCGATGTATGAGTTACATTAGAATTATGCATTATAATCATAATAACATTATCATGGTACGGAGTACATACATTATCAAAACATACTCTGCATTGTACAATACTATGAGAATTGCATGCTAATTCATTAATTATTATATCCGGCCAAGAAATGGTAAACCATGCTAAACAAAAACGTTACGTTGTTATTAATTACTACGTAGGTCGGGTTGCAACGAGCACAACTTCGCTAGCAGGACCGAGTGCTTCAGATGCAGGGAACCAAGGGACTCTGGAAGTAACTCTGCATACTAAACGCACCATTTCACGGTATGTCCTCAATTAGCGTCAAATTAAGTTACTCCGGCCCTTCGTCCGAAAATAATGTTTTCTAATCGACACGTGTACTCATAACCTAACTTCTTTTTTTGTTTTGGTTTGGCGTACAGTTAATGCATGCTACGGAAGTACGTGCGAGGACGAAGCTAAACGAAGAATATCAAGTTACTACATAAGAGGGCCGAAATTAATCTACTTCGAAATTTTAAATTTCCCTCTAAATTTTCCCTATTTAAATTTCATTTTTAGGTTAAAAATCAAGATAATTCATGCTAAAATTAGAAGTTTTTGACTTGATGAGCTTAATTATTAGTTTTGTTACATTTTGACGAGTTTAGTATGATAATCTATTTAGTTAGCTAGTTATTTTGATGGTCTAAGCTCATCTCACTTAAATTTGTCCCTTTTATTTATCTTTTCCCTTTTTCCGATTTTTATTTTATTTTTGTTTTTAATTCGGCGAGAGAGCCAATCTCCCAACCATTATCTCTTTATGTAGTAGTTGATGTTCTACGATGCAATGAAAGTTGGAATATTTTTAGTAATATTTGGTTATCATATTTCTTTTAATAATTTTGGTAATATTAAGTTAGCATCAACTCGAAAG

mRNA sequence

TTCTCTCTCTTACACTCCCTCTATTCAACTGAGCTGCCTCAAATCTTTTCGAGAATCGAGGCATTTCTGCATGTTATAAAAACCATGCTTACCCATTCACAAACACCAACCCATCCGTTTTCCTCTCTTTTAAACCCTAATTTTGCGTTCTCTTTCCCAAACGCACAACTTCTTCTTCTACCATATCTTCAAGGGAAAGTGTAGGAGAAACAAAATGAACAGGCCAGGTGATTGGAACTGTAGGTCATGCAGCCACTTGAACTTCCAGAGGAGGGACTCGTGCCAGCGCTGTGGGGACCAACGTCCTGATGGCCGAGGAAGCGGTGGCGGCAACGGTGACTTCGGAAGCTTTGGAGGGAGGTCAGGTGGGCCCTCCTTTGCTGGGGGATTTGCGGGTCCTGATGTTAGGCCTGGTGATTGGTATTGTAGCATTGGCAACTGTGGGGCCCACAACTTTGCTAGTAGGTCTAGCTGCTTCAAGTGTGGAGCTTACAAGGAGGAAGCTGCCTCCGCTGATATGGGCCGCTCACGTGGATTCTCCTTCGGTACCGGACTTGGCGGTGCCGGACTTGCCGTTGGTGGTCTTGGCGGTGGTGTACCTGGTGCTAGCGGCCGCTCTGGCTGGAAATCCGGTGACTGGATTTGCACTAGGTCGGGTTGCAACGAGCACAACTTCGCTAGCAGGACCGAGTGCTTCAGATGCAGGGAACCAAGGGACTCTGGAAGTAACTCTGCATACTAAACGCACCATTTCACGTTAATGCATGCTACGGAAGTACGTGCGAGGACGAAGCTAAACGAAGAATATCAAGTTACTACATAAGAGGGCCGAAATTAATCTACTTCGAAATTTTAAATTTCCCTCTAAATTTTCCCTATTTAAATTTCATTTTTAGGTTAAAAATCAAGATAATTCATGCTAAAATTAGAAGTTTTTGACTTGATGAGCTTAATTATTAGTTTTGTTACATTTTGACGAGTTTAGTATGATAATCTATTTAGTTAGCTAGTTATTTTGATGGTCTAAGCTCATCTCACTTAAATTTGTCCCTTTTATTTATCTTTTCCCTTTTTCCGATTTTTATTTTATTTTTGTTTTTAATTCGGCGAGAGAGCCAATCTCCCAACCATTATCTCTTTATGTAGTAGTTGATGTTCTACGATGCAATGAAAGTTGGAATATTTTTAGTAATATTTGGTTATCATATTTCTTTTAATAATTTTGGTAATATTAAGTTAGCATCAACTCGAAAG

Coding sequence (CDS)

ATGAACAGGCCAGGTGATTGGAACTGTAGGTCATGCAGCCACTTGAACTTCCAGAGGAGGGACTCGTGCCAGCGCTGTGGGGACCAACGTCCTGATGGCCGAGGAAGCGGTGGCGGCAACGGTGACTTCGGAAGCTTTGGAGGGAGGTCAGGTGGGCCCTCCTTTGCTGGGGGATTTGCGGGTCCTGATGTTAGGCCTGGTGATTGGTATTGTAGCATTGGCAACTGTGGGGCCCACAACTTTGCTAGTAGGTCTAGCTGCTTCAAGTGTGGAGCTTACAAGGAGGAAGCTGCCTCCGCTGATATGGGCCGCTCACGTGGATTCTCCTTCGGTACCGGACTTGGCGGTGCCGGACTTGCCGTTGGTGGTCTTGGCGGTGGTGTACCTGGTGCTAGCGGCCGCTCTGGCTGGAAATCCGGTGACTGGATTTGCACTAGGTCGGGTTGCAACGAGCACAACTTCGCTAGCAGGACCGAGTGCTTCAGATGCAGGGAACCAAGGGACTCTGGAAGTAACTCTGCATACTAA

Protein sequence

MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFAGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24276	Spo24276	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24276.1	Spo24276.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24276.1.utr5p.2	Spo24276.1.utr5p.2	five_prime_UTR
Spo24276.1.utr5p.1	Spo24276.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24276.1.CDS.2	Spo24276.1.CDS.2	CDS
Spo24276.1.CDS.1	Spo24276.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24276.1.utr3p.2	Spo24276.1.utr3p.2	three_prime_UTR
Spo24276.1.utr3p.1	Spo24276.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24276.1.exon.4	Spo24276.1.exon.4	exon
Spo24276.1.exon.3	Spo24276.1.exon.3	exon
Spo24276.1.exon.2	Spo24276.1.exon.2	exon
Spo24276.1.exon.1	Spo24276.1.exon.1	exon

Homology

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BLAST of Spo24276.1 vs. NCBI nr
Match: gi|902224901|gb|KNA19916.1| (hypothetical protein SOVF_057220 [Spinacia oleracea])

HSP 1 Score: 361.3 bits (926), Expect = 9.500e-97
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA
Sbjct: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA 120
           GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA
Sbjct: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA 120

Query: 121 VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
           VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY
Sbjct: 121 VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 175

[Close]

BLAST of Spo24276.1 vs. NCBI nr
Match: gi|731320168|ref|XP_010670662.1| (PREDICTED: TATA-binding protein-associated factor 2N [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 289.3 bits (739), Expect = 4.600e-75
Identity = 148/178 (83.15%), Postives = 152/178 (85.39%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGS-FGGRSGGPSFAGGF 60
           M+RPGDWNCRSCSHLNFQRRDSCQRCGD RPDGRG GGG GDFGS FGGRSGG  F GGF
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDIRPDGRGGGGGGGDFGSSFGGRSGGSPFGGGF 60

Query: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASAD-MGRSRGFSFGTGLGGAG 120
           AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEA   D MGRSRG          G
Sbjct: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAGCGDSMGRSRG----------G 120

Query: 121 LAVGGLGGGVPG-ASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
            + GG+GGG  G A+GRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY
Sbjct: 121 FSFGGIGGGGSGAATGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 168

[Close]

BLAST of Spo24276.1 vs. NCBI nr
Match: gi|89953389|gb|ABD83289.1| (GlimmerM protein 152 [Beta vulgaris])

HSP 1 Score: 280.8 bits (717), Expect = 1.600e-72
Identity = 143/174 (82.18%), Postives = 148/174 (85.06%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGS-FGGRSGGPSFAGGF 60
           M+RPGDWNCRSCSHLNFQRRDSCQRCGD RPDGRG GGG GDFGS FGGRSGG  F GGF
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDVRPDGRGGGGGGGDFGSSFGGRSGGSPFGGGF 60

Query: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASAD-MGRSRGFSFGTGLGGAG 120
           AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEA   D MGRSRG          G
Sbjct: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAGCGDSMGRSRG----------G 120

Query: 121 LAVGGLGGGVPG-ASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGS 172
            + GG+GGG  G A+GRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSG+
Sbjct: 121 FSFGGIGGGGSGAATGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGN 164

[Close]

BLAST of Spo24276.1 vs. NCBI nr
Match: gi|225442855|ref|XP_002285376.1| (PREDICTED: TATA-binding protein-associated factor 2N [Vitis vinifera])

HSP 1 Score: 226.9 bits (577), Expect = 2.800e-56
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           M+RPGDWNCRSC H+NFQRRDSCQRCGD +        G GDFGSFGGR GG SF  GF 
Sbjct: 1   MSRPGDWNCRSCQHMNFQRRDSCQRCGDPK-------SGGGDFGSFGGR-GGSSF--GFT 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAAS---ADMGRSRGFSFGTGLGGA 120
           G DVRPGDWYC+ GNCGAHNFASRS+CFKCGA+K+E+A    +DM RSRGF FG      
Sbjct: 61  GSDVRPGDWYCNAGNCGAHNFASRSNCFKCGAFKDESAGGYDSDMSRSRGFGFG------ 120

Query: 121 GLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
                       G SGRSGWKSGDWIC+RSGCNEHNFASR ECFRC  PRD  + ++Y
Sbjct: 121 ------------GGSGRSGWKSGDWICSRSGCNEHNFASRMECFRCNAPRDLSNKTSY 150

[Close]

BLAST of Spo24276.1 vs. NCBI nr
Match: gi|590579604|ref|XP_007013833.1| (Ran BP2/NZF zinc finger-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 226.5 bits (576), Expect = 3.700e-56
Identity = 116/178 (65.17%), Postives = 130/178 (73.03%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           M+RPGDWNCRSC +LNFQRRDSCQRCG+ RP      G  GD+GSFG R GG SF  GF 
Sbjct: 1   MSRPGDWNCRSCQYLNFQRRDSCQRCGEPRP------GERGDYGSFGSR-GGSSF--GFT 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAA---SADMGRSRGFSFGTGLGGA 120
           GPDVRPGDWYC++GNCGAHNFASRSSCFKCGA K+E++     DM R RG+ FG+     
Sbjct: 61  GPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAAKDESSGGFEGDMPRMRGYGFGS----- 120

Query: 121 GLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
                       G+S RS WKSGDWICTRSGCNEHNFASR ECFRC  PRDSG+ S+Y
Sbjct: 121 ------------GSSSRSSWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSGNKSSY 152

[Close]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK71_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057220 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 6.600e-97
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA
Sbjct: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA 120
           GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA
Sbjct: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA 120

Query: 121 VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
           VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY
Sbjct: 121 VGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 175

[Close]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT96_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042990 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.200e-75
Identity = 148/178 (83.15%), Postives = 152/178 (85.39%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGS-FGGRSGGPSFAGGF 60
           M+RPGDWNCRSCSHLNFQRRDSCQRCGD RPDGRG GGG GDFGS FGGRSGG  F GGF
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDIRPDGRGGGGGGGDFGSSFGGRSGGSPFGGGF 60

Query: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASAD-MGRSRGFSFGTGLGGAG 120
           AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEA   D MGRSRG          G
Sbjct: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAGCGDSMGRSRG----------G 120

Query: 121 LAVGGLGGGVPG-ASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
            + GG+GGG  G A+GRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY
Sbjct: 121 FSFGGIGGGGSGAATGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 168

[Close]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Match: Q20CD6_BETVU (GlimmerM protein 152 OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.100e-72
Identity = 143/174 (82.18%), Postives = 148/174 (85.06%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGS-FGGRSGGPSFAGGF 60
           M+RPGDWNCRSCSHLNFQRRDSCQRCGD RPDGRG GGG GDFGS FGGRSGG  F GGF
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDVRPDGRGGGGGGGDFGSSFGGRSGGSPFGGGF 60

Query: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASAD-MGRSRGFSFGTGLGGAG 120
           AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEA   D MGRSRG          G
Sbjct: 61  AGPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAGCGDSMGRSRG----------G 120

Query: 121 LAVGGLGGGVPG-ASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGS 172
            + GG+GGG  G A+GRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSG+
Sbjct: 121 FSFGGIGGGGSGAATGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGN 164

[Close]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Match: F6HX96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06110 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.000e-56
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           M+RPGDWNCRSC H+NFQRRDSCQRCGD +        G GDFGSFGGR GG SF  GF 
Sbjct: 84  MSRPGDWNCRSCQHMNFQRRDSCQRCGDPK-------SGGGDFGSFGGR-GGSSF--GFT 143

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAAS---ADMGRSRGFSFGTGLGGA 120
           G DVRPGDWYC+ GNCGAHNFASRS+CFKCGA+K+E+A    +DM RSRGF FG      
Sbjct: 144 GSDVRPGDWYCNAGNCGAHNFASRSNCFKCGAFKDESAGGYDSDMSRSRGFGFG------ 203

Query: 121 GLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
                       G SGRSGWKSGDWIC+RSGCNEHNFASR ECFRC  PRD  + ++Y
Sbjct: 204 ------------GGSGRSGWKSGDWICSRSGCNEHNFASRMECFRCNAPRDLSNKTSY 233

[Close]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MQE0_GOSAR (Putative RNA-binding C17H9.04c OS=Gossypium arboreum GN=F383_24421 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.500e-56
Identity = 117/178 (65.73%), Postives = 130/178 (73.03%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           M+RPGDWNCRSC HLNFQRRDSCQRCG+ RP   G G   GD+GSFGGR GG SF  GF 
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRP---GGGDRGGDYGSFGGR-GGSSF--GFT 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAA---SADMGRSRGFSFGTGLGGA 120
           GPDVRPGDWYC++GNCGAHNFASRSSCFKCGA K+E++    +D+ R RG+ F T     
Sbjct: 61  GPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAAKDESSGGFESDIPRMRGYGFST----- 120

Query: 121 GLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
                       G+S RS WKSGDWICTRSGCNEHNFASR ECFRC  PRDS   S+Y
Sbjct: 121 ------------GSSSRSNWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSTHKSSY 155

[Close]

BLAST of Spo24276.1 vs. TAIR (Arabidopsis)
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 204.5 bits (519), Expect = 5.200e-53
Identity = 109/183 (59.56%), Postives = 123/183 (67.21%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           M+RPGDWNCRSCSHLNFQRRDSCQRCGD R    G GG   DFG+FGGR+   S  G   
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGL--DFGNFGGRA--MSAFGFTT 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLA 120
           G DVRPGDWYC++GNCG HNFASRS+CFKCG +K+E               TG GG G  
Sbjct: 61  GSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDE---------------TGAGGGGGG 120

Query: 121 VGG--------LGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSN 176
           +GG        +   VPG  GRS WKSGDWICTR GCNEHNFASR ECFRC  PRD  + 
Sbjct: 121 IGGPAMFDADIMRSRVPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNR 164

[Close]

BLAST of Spo24276.1 vs. TAIR (Arabidopsis)
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 3.300e-47
Identity = 103/178 (57.87%), Postives = 120/178 (67.42%), Query Frame = 1


		  
Query: 1   MNRPGDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFA 60
           MNRPGDWNCR CSHLNFQRRDSCQRC + RP G  +   +G    FGGR    SF G   
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSG----FGGRPVSSSF-GFNT 60

Query: 61  GPDVRPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGF---SFGTGLGGA 120
           GPDVRPGDWYC++G+CG HNFA+RSSCFKCGA K+E + +    + GF   + G   G  
Sbjct: 61  GPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLF 120

Query: 121 GLAVGGLGGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSGSNSAY 176
           G      GG   G +GRS WKSGDWIC RSGCNEHNFASR+ECFRC  P++  +   Y
Sbjct: 121 GFGGSSSGG---GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]

BLAST of Spo24276.1 vs. TAIR (Arabidopsis)
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 115.2 bits (287), Expect = 4.200e-26
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1


		  
Query: 5   GDWNCRSCSHLNFQRRDSCQRCGDQRPDGRGSGGGNGDFGSFGGRSGGPSFAGGFAGPDV 64
           GDW C +C H NF++R+SCQ+CG               +  FGG          +   +V
Sbjct: 6   GDWLCGACQHANFKKRESCQKCG---------------YPKFGGVDVSTYL---YNRTEV 65

Query: 65  RPGDWYCSIGNCGAHNFASRSSCFKCGAYKEEAASADMGRSRGFSFGTGLGGAGLAVGGL 124
             GDWYC   NCG+HN+ASR+SC++CG  K E      G               +A G  
Sbjct: 66  MAGDWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQM------------VAYGND 125

Query: 125 GGGVPGASGRSGWKSGDWICTRSGCNEHNFASRTECFRCREPRDSG 171
           G   P      GWK+GDW+C R GC  HN+ASR ECF+C+  RD G
Sbjct: 126 GAACP-----PGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRDYG 136

The following BLAST results are available for this feature:

BLAST of Spo24276.1 vs. NCBI nr
BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
BLAST of Spo24276.1 vs. ExPASy Swiss-Prot
BLAST of Spo24276.1 vs. TAIR (Arabidopsis)

BLAST of Spo24276.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902224901\|gb\|KNA19916.1\|	9.5e-97	100.	hypothetical protein SOVF_0572...	[more]
gi\|731320168\|ref\|XP_010670662.1\|	4.6e-75	83.1	PREDICTED: TATA-binding protei...	[more]
gi\|89953389\|gb\|ABD83289.1\|	1.6e-72	82.1	GlimmerM protein 152 [Beta vul...	[more]
gi\|225442855\|ref\|XP_002285376.1\|	2.8e-56	65.1	PREDICTED: TATA-binding protei...	[more]
gi\|590579604\|ref\|XP_007013833.1\|	3.7e-56	65.1	Ran BP2/NZF zinc finger-like s...	[more]

BLAST of Spo24276.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RK71_SPIOL	6.6e-97	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CT96_BETVU	3.2e-75	83.1	Uncharacterized protein OS=Bet...	[more]
Q20CD6_BETVU	1.1e-72	82.1	GlimmerM protein 152 OS=Beta v...	[more]
F6HX96_VITVI	2.0e-56	65.1	Putative uncharacterized prote...	[more]
A0A0B0MQE0_GOSAR	2.5e-56	65.7	Putative RNA-binding C17H9.04c...	[more]

BLAST of Spo24276.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo24276.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G15680.1	5.2e-53	59.5	Ran BP2/NZF zinc finger-like s...	[more]
AT5G25490.1	3.3e-47	57.8	Ran BP2/NZF zinc finger-like s...	[more]
AT2G26695.1	4.2e-26	38.5	Ran BP2/NZF zinc finger-like s...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	GENE3D	4.10.1060.10		coord: 62..98 score: 6.3E-16coord: 3..33 score: 4.5E-12coord: 133..170 score: 3.3
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 138..163 score: 1.7E-8coord: 65..95 score: 4.9E-6coord: 3..30 score: 8.
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 67..93 score: 4.3E-6coord: 5..29 score: 3.9E-5coord: 140..166 score: 8.
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26 score: -coord: 69..90 score: -coord: 142..163 scor
IPR001876	Zinc finger, RanBP2-type	PROFILE	PS50199	ZF_RANBP2_2	coord: 138..169 score: 10.455coord: 65..96 score: 9.936coord: 3..32 score: 9
IPR001876	Zinc finger, RanBP2-type	unknown	SSF90209	Ran binding protein zinc finger-like	coord: 62..96 score: 1.65E-11coord: 2..33 score: 3.3E-8coord: 133..170 score: 7.77
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..172 score: 3.8
None	No IPR available	PANTHER	PTHR23111:SF34	SUBFAMILY NOT NAMED	coord: 1..172 score: 3.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding