Spo24414.1 (mRNA)

Overview
NameSpo24414.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L32-1
Locationchr2 : 20294905 .. 20299187 (+)
Sequence length1288
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGATCAAGAAGGGGTGTGCATAAAACAACATGGCTTCAATCTAGACGATGTCATTGATATTGAAAGAGTGAAGGAGGTAAGGTCGAGGATGGTTCATACCTTGGAGTATTTGTAAGATTTTTTGCTTTGGTGGTAGAAACACATTATGCCTACTAAGATTTTATAAATCGGGTTACTGGACTGGGTAACAGAGTTCAACTCAGTTATGAATGGACCTGATCACGTTAAAATGGATAATGTTGGGTCAAAGTTTATATTTGTACTAGCTCGAGTAACTTTGAATTCATAATTGGGTTAAGTTGGTTTGACTTCAGGTGATTTCATTTCGGGTTAATATTCGTGTCCAGTTTGAACTGGTTCATGCTAAATATGGGTTATACCGGTTTAATTCGGTTTGTGTCGAGTTTGGTCTGTGTGCTGGTGGATTACGGTACACATCAACTGGTTTACCGTGGGTATGTATGAGTCATATTCGAAAGATTAATCTTGGGTTCAGGTCAAGTTTGGATATGTTGAGTATCATATATACTTCGTATATGTCAACTTTAGATCAACTTAGGGTAAATTTCGATTTGGGCATATGGTTTGAGTTCAGATTGAGTTAGGGTTGTAATCTCGTATTGTATAGATTAAGTGAGTCTCAAGTTTACAATCAATTTAAGATCACTTTATTAATCAAATATTCCATGGCAAATTTAGTTTTTTTTAAAAAAGTTTCTATGACTTTGTCTCCGAATTATTTATCATACAAACAAAAGATACTAACTTTTGTAACAACTCGAAACTTGTCTTGATTTTTGAGAATTGAATCGGATTGAAGACAATTCAGTTGAATTTGAGTTCGTGTCTACAACAATGCAAGTTAAATCGGTTATCGAATTTTGTTGGGTTGAATTGATTGTGGTTGTTATCGGAAAAAACCAACTTTTCTATGGTTGCTGCATCAGATGCGGGTTTGTTTTAGTTAAAAGTTGTTGGGATTTAAATTGAGTTACGAGTCTCCTCAGGTTGCTAACGGATTAATTTCAAAGTCTGAATTCACTATGTTTAACGGATTTCTAATCATCATCAGGTCTGTTCAGATCAATTTCGGAATTTATGTTTCTCAGATAAACTCACTTATGATATCGCTTATTTTCACCGTACGAAACGATTTCTCAAGTCAGGTCGATTTTTGACACGTAAGGCGTAACTACGATCCTATTGAGTATGGCCGGCCATCTTCCCCTCTTCAGTTTTCACAAAATAAAGGCCCAAATACACAAACCCGTAGACCCGTGATAAGAAAAGCCCTAATAAGAACACTATAAACAAAGCTTCTAGGGTTTCACCGAAAGTTTCTCCGTAAGCTTCCCTGTCAAAGGTTTCTCCGTAAGTTTCTCTCGTTCTCTCTCCTCTTCTGCCATTAGTTCTCTTCATTTCCTGCATTTTCAATGATTTATGCACTCAGTTTTGTTCATTTTCCATTACTTTTGAGCTTAATTTGAACAATCCTTTCTTATTTTTGAAACTTTGAAGGAATCAGCAATGGCCGTTCCTAAATTGGTCAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAGCGTCCGCAACATGACAGGCGGATGTGTGTCAAGGTATATACTTTCACATCCTTCATTTCTGCAACTTTTTAATCTTAGATTTAGCTTTTTTGATTGCTCAAATGTTTAAAATTTTGGAAGAAAAGTAAATTTTTGTTGGATTTCATTGCTAGTAGTCGTGAATTGCAGTGATAATGGTTTAATTTCTACAGTTTTTGGTATTATTGTTGACATGAAGTTTACATGAGCTGGTTGCATAAATGTAAGCTAAGTATACGGAATGTGATTTTTTGGCGTAAATGAGTGTATTGGTGATCTAGTTTATGAAAATAGTTGGATATAGAGGCGAAGGGTTTTTGACATGATGAATGTCGGTATCTGATGTTTTTGGGGTAAACTAGGTTACTTTATTGAGATTTTTGTTAAGTGTATTGAGAACGTGGTCAAATCTGCGTTTTGTATTCATATGAATTGACTTTGAACTCGGGCACCCTTTGGATTAATTTTATTCTGGTTTTAAACCTGCTGTCCTCTATGAATATAACGCCTTTATGCAGAATGTCGTTTATTCATTTTTGTACGAAATCATATTTGCAGTAAGCACTCACTTACCTGTCTTGGGGTGATTTGGAAGCACTTCACTTTTTAAAGTTGATGTTTTTTCAATTAAAGTTGGTTGGTTACTGGGTTGTAATTTTCATTTTTATATATAACCAAAATTCAGCTGTGTAATTGTGTGGTATTTCGTATTAGTTTGTTTGAACAGAGCGTCATAAAGGTGTAAAACAACCCGGTTAGTAGTTGGTACCAAGCTTACAATCAAATTCTGATGTAGAGTGTCATAGTTTAGCTCTTTAGCCTTTTCTAGTAGATTTGTTTTACTGTTTGTTATCTGCTTGATGCCTTGACCTATATGCATTTTTAGCTACGCTGGTGTATTACACAAGCTTGTAAAACTAGTAATTTAATGTACAATCTGGGCTATGCATTAATCACTGGGCTGCACACTATCCAGAGTCAAGATATTAAGTTTGTGGGTTGTCATGATTAGTTGTGGGCACATGTCTTTGATATGATATTCATGCTGTCAGGGTTGTAAGTTTTCTGCGAATGCTTGCCTCACAACTGTTGGGGCTAGCCTTTGAATAAAAGTATATTAGTTAATTTATAACACAGAAAAATATTTGGTGTTTAAATGTTATGTTCTAAAAAATACCCCCATGAGAACTGGTCTTTCTATGTCTTGGCCAGAAGGGTTGTGTAAAATTGATTTGTGTTTACTTCATGTTTTAATCAAGATGCTATGGGTGATTCTGATGCATTTTTATGTGTTATTTGAAACCTGAGCGGTCTATATGTTGGGCTTATAGAGTTCAATCTCCTAGAGGCATTGGGCTCAGTTGGGCTTATAGAGTTCAATCCCTAATGCTTGGGTAATTTTAGAGGCATTGTGTCACCTTCCACCTGTGAGGTTGGGGATCCTGTTCCCGTTCCCTTTCCCTGTATTATGTGGTTGTTTCCAGTCAAATATCTTTGGCTCCCCCTCTCTCCTATGAGGGGAGTGTGTGTTGAAAGACAATAGACAATAAATTTCCAAAATATAATGATTCTGCTGTCCTATTTGATTAAGAAGGGCTCCTCTCAAATTTGTAATTTCTCTGTTAATCTGAATGGTTGTCTCCTGCAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCTCGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTTGTCGTCCACAATGTCAGCGATCTAGAACTTCTTATGATGCATAATCGGTAACAAATAGAATTCCCCCCTTCAACTTTCTTCCTCTCAATCCCTTTCACTGTGTACTAATTTATTGAGTGTGTTTTCTAATATCCAATTTTCTTTGCAAAATTTTAGAACCTACTGTGCTGAGATCGCTCACAACATCTCAACGAAGAAGAGAAAGGATATCGTCGAGCGTGCTGCACAGTTGGATGTCGTAGTCACTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAATCCTTTTGCTGTCTGGGATAAATTTTGTTTTTAGATCAAAACTGGGGGAGACCTTTGTCGAATTCTAGCTTTAGTTGAACTACCCAGTATTTTTATTTGTCAAAATCTATGTTATACGATATCTGCTACTTTGATTTTCGTTCAGGCATTAGTGTTTTATCTTTTTTTCATCATTTGTTTCTCTCCAGTGTGTCCTCGGTCTTTGGCTTCTTACCTTGTTTGTTTGAAATCAGCAGAGTGCATACCACTTGACTAAAATCAAGTGATCTTATGCTAGAGAATTCGGGTCTATTATCTAGCATCTTCACTGGTTTGTTCTTGTGAGTGTGAACAAGATTTGGTCATCCCAGGCTAACTTTGTAAGGGACGATTTAAGCCAAGGTTTGTGGTATCTATTTGAGTTGTGGGTTAGCCTGTTGATCTTTGTGCGGAGGTAGCGTTTAGACCTAGTCAAAACTCTAGTAGATAAAACTAGGGGTGTTTTGTAGGCTAAACGGTTTTCTCTAACATCTTGTACAGTTGCACTAATGATACCATAAACAGATTTCTAATACTGTATCAGTTACACTAAATCGTAATCATGACATTTAATCTAGTTAAGTAATTA

mRNA sequence

ATGTGTGATCAAGAAGGGGTGTGCATAAAACAACATGGCTTCAATCTAGACGATGTCATTGATATTGAAAGAGTGAAGGAGGTGATTTCATTTCGGGTTAATATTCGTGTCCAGTTTGAACTGGTTCATGCTAAATATGGGTTATACCGGTTTAATTCGGTTTGTGTCGAGTTTGGTCTGTGTGCTGGTGGATTACGGTACACATCAACTGGTTTACCGTGGGGTTTCACCGAAAGTTTCTCCGTAAGCTTCCCTGTCAAAGGTTTCTCCGAATCAGCAATGGCCGTTCCTAAATTGGTCAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAGCGTCCGCAACATGACAGGCGGATGTGTGTCAAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCTCGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTTGTCGTCCACAATGTCAGCGATCTAGAACTTCTTATGATGCATAATCGAACCTACTGTGCTGAGATCGCTCACAACATCTCAACGAAGAAGAGAAAGGATATCGTCGAGCGTGCTGCACAGTTGGATGTCGTAGTCACTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAATCCTTTTGCTGTCTGGGATAAATTTTGTTTTTAGATCAAAACTGGGGGAGACCTTTGTCGAATTCTAGCTTTAGTTGAACTACCCAGTATTTTTATTTGTCAAAATCTATGTTATACGATATCTGCTACTTTGATTTTCGTTCAGGCATTAGTGTTTTATCTTTTTTTCATCATTTGTTTCTCTCCAGTGTGTCCTCGGTCTTTGGCTTCTTACCTTGTTTGTTTGAAATCAGCAGAGTGCATACCACTTGACTAAAATCAAGTGATCTTATGCTAGAGAATTCGGGTCTATTATCTAGCATCTTCACTGGTTTGTTCTTGTGAGTGTGAACAAGATTTGGTCATCCCAGGCTAACTTTGTAAGGGACGATTTAAGCCAAGGTTTGTGGTATCTATTTGAGTTGTGGGTTAGCCTGTTGATCTTTGTGCGGAGGTAGCGTTTAGACCTAGTCAAAACTCTAGTAGATAAAACTAGGGGTGTTTTGTAGGCTAAACGGTTTTCTCTAACATCTTGTACAGTTGCACTAATGATACCATAAACAGATTTCTAATACTGTATCAGTTACACTAAATCGTAATCATGACATTTAATCTAGTTAAGTAATTA

Coding sequence (CDS)

ATGTGTGATCAAGAAGGGGTGTGCATAAAACAACATGGCTTCAATCTAGACGATGTCATTGATATTGAAAGAGTGAAGGAGGTGATTTCATTTCGGGTTAATATTCGTGTCCAGTTTGAACTGGTTCATGCTAAATATGGGTTATACCGGTTTAATTCGGTTTGTGTCGAGTTTGGTCTGTGTGCTGGTGGATTACGGTACACATCAACTGGTTTACCGTGGGGTTTCACCGAAAGTTTCTCCGTAAGCTTCCCTGTCAAAGGTTTCTCCGAATCAGCAATGGCCGTTCCTAAATTGGTCAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAGCGTCCGCAACATGACAGGCGGATGTGTGTCAAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCTCGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTTGTCGTCCACAATGTCAGCGATCTAGAACTTCTTATGATGCATAATCGAACCTACTGTGCTGAGATCGCTCACAACATCTCAACGAAGAAGAGAAAGGATATCGTCGAGCGTGCTGCACAGTTGGATGTCGTAGTCACTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAA

Protein sequence

MCDQEGVCIKQHGFNLDDVIDIERVKEVISFRVNIRVQFELVHAKYGLYRFNSVCVEFGLCAGGLRYTSTGLPWGFTESFSVSFPVKGFSESAMAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVTNKLARLRSQEDE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24414Spo24414gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24414.1Spo24414.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24414.1.exon.1Spo24414.1.exon.1exon
Spo24414.1.exon.2Spo24414.1.exon.2exon
Spo24414.1.exon.3Spo24414.1.exon.3exon
Spo24414.1.exon.4Spo24414.1.exon.4exon
Spo24414.1.exon.5Spo24414.1.exon.5exon
Spo24414.1.exon.6Spo24414.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24414.1.CDS.1Spo24414.1.CDS.1CDS
Spo24414.1.CDS.2Spo24414.1.CDS.2CDS
Spo24414.1.CDS.3Spo24414.1.CDS.3CDS
Spo24414.1.CDS.4Spo24414.1.CDS.4CDS
Spo24414.1.CDS.5Spo24414.1.CDS.5CDS
Spo24414.1.CDS.6Spo24414.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24414.1.utr3p.1Spo24414.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo24414.1 vs. NCBI nr
Match: gi|902228282|gb|KNA21043.1| (hypothetical protein SOVF_046840 [Spinacia oleracea])

HSP 1 Score: 264.2 bits (674), Expect = 2.000e-67
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
            NKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. NCBI nr
Match: gi|902213767|gb|KNA17331.1| (hypothetical protein SOVF_080870 [Spinacia oleracea])

HSP 1 Score: 261.2 bits (666), Expect = 1.700e-66
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVPKL KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
            NKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. NCBI nr
Match: gi|902205155|gb|KNA15105.1| (hypothetical protein SOVF_101290, partial [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 6.600e-66
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1 

		  

Query: 92  SAMAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY 151
           SAMAVPKL KKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY
Sbjct: 27  SAMAVPKLEKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY 86

Query: 152 GSDKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDV 211
           GSDKKTRH+LPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+
Sbjct: 87  GSDKKTRHYLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDI 146

Query: 212 VVTNKLARLRSQEDE 227
           VV NKLARLRSQEDE
Sbjct: 147 VVINKLARLRSQEDE 161
[Close]
BLAST of Spo24414.1 vs. NCBI nr
Match: gi|731319339|ref|XP_010670205.1| (PREDICTED: 60S ribosomal protein L32-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.9 bits (629), Expect = 3.400e-62
Identity = 122/133 (91.73%), Postives = 130/133 (97.74%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KKIVKKRVK+FKRPQHDR++CVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQHDRKICVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRK+IVERAAQLD+VV
Sbjct: 61  DKKTRHFLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKEIVERAAQLDIVV 120

Query: 214 TNKLARLRSQEDE 227
           TNKLARL S+EDE
Sbjct: 121 TNKLARLASREDE 133
[Close]
BLAST of Spo24414.1 vs. NCBI nr
Match: gi|695033485|ref|XP_009404229.1| (PREDICTED: 60S ribosomal protein L32-1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 246.5 bits (628), Expect = 4.400e-62
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L K+IVKKRVKQFKRPQ DR++CVKTNWRRPKGIDSRVRRKFKG TLMPNIGYGS
Sbjct: 1   MAVPLLTKRIVKKRVKQFKRPQSDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKFVVHNV+DLELLMMHNRTYCAEIAHNISTKKRK IVERAAQLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVADLELLMMHNRTYCAEIAHNISTKKRKLIVERAAQLDIVV 120

Query: 214 TNKLARLRSQEDE 227
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046840 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.400e-67
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
            NKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCT8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080870 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.200e-66
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVPKL KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
            NKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6H6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_101290 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.600e-66
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1 

		  

Query: 92  SAMAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY 151
           SAMAVPKL KKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY
Sbjct: 27  SAMAVPKLEKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGY 86

Query: 152 GSDKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDV 211
           GSDKKTRH+LPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+
Sbjct: 87  GSDKKTRHYLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDI 146

Query: 212 VVTNKLARLRSQEDE 227
           VV NKLARLRSQEDE
Sbjct: 147 VVINKLARLRSQEDE 161
[Close]
BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYS5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g039920 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.400e-62
Identity = 122/133 (91.73%), Postives = 130/133 (97.74%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KKIVKKRVK+FKRPQHDR++CVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQHDRKICVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRHFLPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRK+IVERAAQLD+VV
Sbjct: 61  DKKTRHFLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKEIVERAAQLDIVV 120

Query: 214 TNKLARLRSQEDE 227
           TNKLARL S+EDE
Sbjct: 121 TNKLARLASREDE 133
[Close]
BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Match: M0T6A2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.100e-62
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L K+IVKKRVKQFKRPQ DR++CVKTNWRRPKGIDSRVRRKFKG TLMPNIGYGS
Sbjct: 31  MAVPLLTKRIVKKRVKQFKRPQSDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 90

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKFVVHNV+DLELLMMHNRTYCAEIAHNISTKKRK IVERAAQLD+VV
Sbjct: 91  DKKTRHYLPNGFKKFVVHNVADLELLMMHNRTYCAEIAHNISTKKRKLIVERAAQLDIVV 150

Query: 214 TNKLARLRSQEDE 227
           TNKLARLRSQEDE
Sbjct: 151 TNKLARLRSQEDE 163
[Close]
BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 4.600e-59
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KK+VKKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKFVVHN S+LELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.700e-58
Identity = 112/133 (84.21%), Postives = 122/133 (91.73%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KK+VKKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKF+VHN S+LELLMMHNRTYCAEIAHNISTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 4.600e-43
Identity = 86/130 (66.15%), Postives = 109/130 (83.85%), Query Frame = 1 

		  

Query: 97  PKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 156
           P +  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 157 TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVTNK 216
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 217 LARLRSQEDE 227
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 4.600e-43
Identity = 86/130 (66.15%), Postives = 109/130 (83.85%), Query Frame = 1 

		  

Query: 97  PKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 156
           P +  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 157 TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVTNK 216
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 217 LARLRSQEDE 227
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3)

HSP 1 Score: 176.0 bits (445), Expect = 4.600e-43
Identity = 86/130 (66.15%), Postives = 109/130 (83.85%), Query Frame = 1 

		  

Query: 97  PKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 156
           P +  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 157 TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVTNK 216
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 217 LARLRSQEDE 227
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24414.1 vs. TAIR (Arabidopsis)
Match: AT4G18100.1 (Ribosomal protein L32e)

HSP 1 Score: 229.2 bits (583), Expect = 2.600e-60
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KK+VKKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKFVVHN S+LELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133
[Close]
BLAST of Spo24414.1 vs. TAIR (Arabidopsis)
Match: AT5G46430.1 (Ribosomal protein L32e)

HSP 1 Score: 227.3 bits (578), Expect = 9.800e-60
Identity = 112/133 (84.21%), Postives = 122/133 (91.73%), Query Frame = 1 

		  

Query: 94  MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 153
           MAVP L KK+VKKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 154 DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 213
           DKKTRH+LPNGFKKF+VHN S+LELLMMHNRTYCAEIAHNISTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 214 TNKLARLRSQEDE 227
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133
The following BLAST results are available for this feature:
BLAST of Spo24414.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228282|gb|KNA21043.1|2.0e-6799.2hypothetical protein SOVF_0468... [more]
gi|902213767|gb|KNA17331.1|1.7e-6697.7hypothetical protein SOVF_0808... [more]
gi|902205155|gb|KNA15105.1|6.6e-6695.5hypothetical protein SOVF_1012... [more]
gi|731319339|ref|XP_010670205.1|3.4e-6291.7PREDICTED: 60S ribosomal prote... [more]
gi|695033485|ref|XP_009404229.1|4.4e-6291.7PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo24414.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RNJ3_SPIOL1.4e-6799.2Uncharacterized protein OS=Spi... [more]
A0A0K9RCT8_SPIOL1.2e-6697.7Uncharacterized protein OS=Spi... [more]
A0A0K9R6H6_SPIOL4.6e-6695.5Uncharacterized protein (Fragm... [more]
A0A0J8CYS5_BETVU2.4e-6291.7Uncharacterized protein OS=Bet... [more]
M0T6A2_MUSAM3.1e-6291.7Uncharacterized protein OS=Mus... [more]
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BLAST of Spo24414.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL321_ARATH4.6e-5984.960S ribosomal protein L32-1 OS... [more]
RL322_ARATH1.7e-5884.260S ribosomal protein L32-2 OS... [more]
RL32_HUMAN4.6e-4366.160S ribosomal protein L32 OS=H... [more]
RL32_RAT4.6e-4366.160S ribosomal protein L32 OS=R... [more]
RL32_PIG4.6e-4366.160S ribosomal protein L32 OS=S... [more]
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BLAST of Spo24414.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G18100.12.6e-6084.9Ribosomal protein L32e[more]
AT5G46430.19.8e-6084.2Ribosomal protein L32e[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32ePRODOMPD003823coord: 113..215
score: 8.0
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 109..215
score: 1.9
IPR001515Ribosomal protein L32eSMARTSM01393Ribosomal_L32e_2coord: 108..215
score: 1.1
IPR001515Ribosomal protein L32eunknownSSF52042Ribosomal protein L32ecoord: 91..224
score: 1.01
NoneNo IPR availablePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 93..226
score: 4.4E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome