Spo24429.1 (mRNA) | SpinachBase

Overview


Name	Spo24429.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00621 : 24288 .. 27600 (-)
Sequence length	976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGTGATGTATCTGCTACATTAAACTAATGGCTTGTTCTGATTTATCATGTTTATCTTATGCCTGTTGTATTTTTATGAATGTGATTTGGATTTGCAACATTCAAGCAAGTTGTTACAAGACGTTTTTTTTTAAAGTTGCTTTGTAATATACTATTTTGTCGCCCATAAAGCTTGAACTCTAATGAGTAATTCTAATGGTTCGTTTTGCACTTGTTGAACATGTTGGTTTTTGATCACTATTTATCATCGTGATCTTGAAGTGTTTGGTACTTGTTTAATAATTAGGGGTTGAATTTGAATCAATAAACCAACTCATGTCTAGTCATAAGTTCTTAAATGTAGAATCTCAGGAGTTCTGGTGGAGGGACTAATAGTTAAGATTGTTACTTGGTTGCCATGGTTGGTAAAATCGTTTACCAGGTACTGACTCAGAATTCAGAAGACAGCTAATATATGAGTTCAACATCATATAAGTGGTGTTGATCACTCATTAACCAGTCAGTTAATCTAGTTACTGCTAAATACTGAGTCAAACTAGACACCTCTTGCCTTGGATCACCAGCAGGACATTGATACGGTTACCAGTAGATCAGAATCTTCAGCTCACCAGAAACATTAAATTCTTGTGTTGTCCTTATACAGTTATCCTATGAGTTTTCTCTGTGCAGTACTTTGCTCCCTGTAGCTTTTTTACTCCTTTTACTTGTTTTACATGCAATTTCCAATATGCTCCGAAAATGATAGTTACTGCAGAGTGATGCACAAAAAAACATGTATGCACAAAAAATATGTATATTGGGAGAAAGTGCACCATCCAGAGGCAAGATTGTACACGTCTAGCCCTCTTGTTTTTTTGAGGGAATACTGGGTAGCTGTTGGTAGCATAAGTTATTGTTGCAGAAGAAAAACAAATGGTTTTTTGGGAGAAAAAAGAACATGGCAACATGGGATACACTCATTTGTCAGATGATAAGCTATCTTTGTGAAAAAAGAGTTTGAGAGAAACGAAAATGGATTACCTATGTAGAAACCATTCTATAGACCATGGCTCTTATATTTAATCTTTGATGTTAGTTTTGCTAAATCCTTGTTCAGCTCTTTGTTCTATCTACTATGCTAGAAATGCATTTCTTAGAAATAAGGCTATTTTGGAGAGAATTATTCTCTTGTCTTGTTTTATTTTTTATTTTTTTTATTGTGTGTGTGTGGCAATTATTAAGAATTTTATTAATAACCAAAGAGACCTTGAAACATGTACAGTAAGTTCAGACTACCAGAACTACAACTTCTCTAGCAGTTAGCTATCAGACAGCTAACCTCAGACATTACTAATCTTCTCTAGCTTCTAGCTCACTGCTGACATTCGCACTGACTTTAGAAATACCCAGAGCCTGCAAGACTTTCCTGATTTCCTCCACCTCTAGCTGAATAAGAGCATTCAAAGAACAAATGACTCACTGATTCTTATCCAGTACTGCGTAAGACACAGATATCTACACAAGGAAGTGAGGAACACCCCATGACTTCAACCTATCTTTAGTAGCCAGCCTGTTTAGGAGCTAACCAAATTACAAAAACACGTTTAGAATTAGCTTTATTGTTACACAACACTCTTCTCCAAGGAACCTTAACATGATCACCTCGAAGTTTCTTATACACTTTGCTAATAGAAAATTCCCCACTCCCATATTGTTGTTCCAGCCTCCCATGTGCTGTATGATTCCACTGCAACCTAAGATGTTCTTCAGAGCCCTAGAGTGATTTTTGGAAGTTCCCATGATTGCACTGCCAGCTATAATGTTCCTTTCATGTTTGTATTTACTATTACTCGTTTCTTAAAGGGCATTATATATTGACAATTTGCAATTGAAGACGTAATTGGTTTAGGATATGGGCTATTCGTTGAGATACATTATGGGAAAAAAAGGGAAGATGGGGTTATTGTGAAGTGTAACAATTATGTATTTTAGTATGAAGAATTTGAGTCACATGTATGAAATCTATCACAATCTTCACTTTGACTAAATTATGTGAAGTAGTATGTACTAGTGAAATGGCCAAGTCCCATATTGTATATCACTTCATATAGCGATTGTAACAAAATCTAGCAATTCTTATATTTGGGGGGGAAGGGAGTGAACTTCTTTATTTGCTGGCAGTGGCATCCGCTGACAATTTTCTTGATTGTAATATGCTTGACCACAATTCCCTGCTCGATACATTGCTGACAATCTTGTGCTTTTTTCTCTGTAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGTATGTGACAATTGACAACGAGTAGGTTAGAATTTTTAAGGTTTACTCTTACCGTGTTATTTCTCACTTAGTGCTATTGTCACAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAGAGAAACAACCTTTTTGCTCACGAACTGGAGATATGTTTGTGATAGCTTGTTAGCTACTTAGCTGTACTGATGATTGTAAGTCCTGAGAGTGGGATATGAATCTTTAAATGTTTTCATCTCTGTCCTCGATCTTTATTCTACTCTTTTCTATATGTTATCTGACTGGTAAATATATCAATTAACCAGAGCTTCATATCTTCTCTCTGGATTTGAAATACCAAGCCGACATTTCTGGAAGTTTGGTCACTTAGGTGATGTTCAGTTGATCAGTTTGTGATTTATTTCTAATTGTGAATGGTGCAAGTTGCTGGAATGTTTTTTTATCAGTCTCTCTGTCCCAGAATTCAAACAAACAGATAAGAGACTGGATCTTCTTCCAAGAAACTAGAACACTGAGATTTGAACATGAGAAAGTGACATGAGAAAAAAACAGCCCATAAACGACAACCCATGATAGGAACCGAATCCTGTCGTTATTGTGATGAGTTTTACGATAGGTCTAAATCCCGTCGTTATTGTGATGGGTTATACGACAGGGCCCAAATCCCGTCGTTTTTGTGATTTGAGTTTTATGACAGAAAACTTGAACCTGTCCATCACCCACCCGCAAATAATTAAAATCCTACAGCAATCTCATATTTTC

mRNA sequence

ATGGCAAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAGAGAAACAACCTTTTTGCTCACGAACTGGAGATATGTTTGTGATAGCTTGTTAGCTACTTAGCTGTACTGATGATTGTAAGTCCTGAGAGTGGGATATGAATCTTTAAATGTTTTCATCTCTGTCCTCGATCTTTATTCTACTCTTTTCTATATGTTATCTGACTGGTAAATATATCAATTAACCAGAGCTTCATATCTTCTCTCTGGATTTGAAATACCAAGCCGACATTTCTGGAAGTTTGGTCACTTAGGTGATGTTCAGTTGATCAGTTTGTGATTTATTTCTAATTGTGAATGGTGCAAGTTGCTGGAATGTTTTTTTATCAGTCTCTCTGTCCCAGAATTCAAACAAACAGATAAGAGACTGGATCTTCTTCCAAGAAACTAGAACACTGAGATTTGAACATGAGAAAGTGACATGAGAAAAAAACAGCCCATAAACGACAACCCATGATAGGAACCGAATCCTGTCGTTATTGTGATGAGTTTTACGATAGGTCTAAATCCCGTCGTTATTGTGATGGGTTATACGACAGGGCCCAAATCCCGTCGTTTTTGTGATTTGAGTTTTATGACAGAAAACTTGAACCTGTCCATCACCCACCCGCAAATAATTAAAATCCTACAGCAATCTCATATTTTC

Coding sequence (CDS)

ATGGCAAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAG

Protein sequence

MASSLDSHIERGERRLSSRYFSFQMSVLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRSSIVNFGSEVTLGSGILCKISSSKVGIRISTLYLWQRDFLVNCSW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24429	Spo24429	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24429.1	Spo24429.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24429.1.CDS.3	Spo24429.1.CDS.3	CDS
Spo24429.1.CDS.2	Spo24429.1.CDS.2	CDS
Spo24429.1.CDS.1	Spo24429.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24429.1.utr3p.1	Spo24429.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24429.1.exon.3	Spo24429.1.exon.3	exon
Spo24429.1.exon.2	Spo24429.1.exon.2	exon
Spo24429.1.exon.1	Spo24429.1.exon.1	exon

Homology

[Close]

BLAST of Spo24429.1 vs. NCBI nr
Match: gi|902212332|gb|KNA16933.1| (hypothetical protein SOVF_084720 isoform A [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 9.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1

		  
Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668

[Close]

BLAST of Spo24429.1 vs. NCBI nr
Match: gi|902212333|gb|KNA16934.1| (hypothetical protein SOVF_084720 isoform B [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 9.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1

		  
Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668

[Close]

BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD59_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1

		  
Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668

[Close]

BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBR1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1

		  
Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668

The following BLAST results are available for this feature:

BLAST of Spo24429.1 vs. NCBI nr
BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
BLAST of Spo24429.1 vs. ExPASy Swiss-Prot
BLAST of Spo24429.1 vs. TAIR (Arabidopsis)

BLAST of Spo24429.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902212332\|gb\|KNA16933.1\|	9.8e-7	57.1	hypothetical protein SOVF_0847...	[more]
gi\|902212333\|gb\|KNA16934.1\|	9.8e-7	57.1	hypothetical protein SOVF_0847...	[more]

BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RD59_SPIOL	6.8e-7	57.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RBR1_SPIOL	6.8e-7	57.1	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo24429.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo24429.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description