Spo24429.1 (mRNA)

Overview
NameSpo24429.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00621 : 24288 .. 27600 (-)
Sequence length976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGTGATGTATCTGCTACATTAAACTAATGGCTTGTTCTGATTTATCATGTTTATCTTATGCCTGTTGTATTTTTATGAATGTGATTTGGATTTGCAACATTCAAGCAAGTTGTTACAAGACGTTTTTTTTTAAAGTTGCTTTGTAATATACTATTTTGTCGCCCATAAAGCTTGAACTCTAATGAGTAATTCTAATGGTTCGTTTTGCACTTGTTGAACATGTTGGTTTTTGATCACTATTTATCATCGTGATCTTGAAGTGTTTGGTACTTGTTTAATAATTAGGGGTTGAATTTGAATCAATAAACCAACTCATGTCTAGTCATAAGTTCTTAAATGTAGAATCTCAGGAGTTCTGGTGGAGGGACTAATAGTTAAGATTGTTACTTGGTTGCCATGGTTGGTAAAATCGTTTACCAGGTACTGACTCAGAATTCAGAAGACAGCTAATATATGAGTTCAACATCATATAAGTGGTGTTGATCACTCATTAACCAGTCAGTTAATCTAGTTACTGCTAAATACTGAGTCAAACTAGACACCTCTTGCCTTGGATCACCAGCAGGACATTGATACGGTTACCAGTAGATCAGAATCTTCAGCTCACCAGAAACATTAAATTCTTGTGTTGTCCTTATACAGTTATCCTATGAGTTTTCTCTGTGCAGTACTTTGCTCCCTGTAGCTTTTTTACTCCTTTTACTTGTTTTACATGCAATTTCCAATATGCTCCGAAAATGATAGTTACTGCAGAGTGATGCACAAAAAAACATGTATGCACAAAAAATATGTATATTGGGAGAAAGTGCACCATCCAGAGGCAAGATTGTACACGTCTAGCCCTCTTGTTTTTTTGAGGGAATACTGGGTAGCTGTTGGTAGCATAAGTTATTGTTGCAGAAGAAAAACAAATGGTTTTTTGGGAGAAAAAAGAACATGGCAACATGGGATACACTCATTTGTCAGATGATAAGCTATCTTTGTGAAAAAAGAGTTTGAGAGAAACGAAAATGGATTACCTATGTAGAAACCATTCTATAGACCATGGCTCTTATATTTAATCTTTGATGTTAGTTTTGCTAAATCCTTGTTCAGCTCTTTGTTCTATCTACTATGCTAGAAATGCATTTCTTAGAAATAAGGCTATTTTGGAGAGAATTATTCTCTTGTCTTGTTTTATTTTTTATTTTTTTTATTGTGTGTGTGTGGCAATTATTAAGAATTTTATTAATAACCAAAGAGACCTTGAAACATGTACAGTAAGTTCAGACTACCAGAACTACAACTTCTCTAGCAGTTAGCTATCAGACAGCTAACCTCAGACATTACTAATCTTCTCTAGCTTCTAGCTCACTGCTGACATTCGCACTGACTTTAGAAATACCCAGAGCCTGCAAGACTTTCCTGATTTCCTCCACCTCTAGCTGAATAAGAGCATTCAAAGAACAAATGACTCACTGATTCTTATCCAGTACTGCGTAAGACACAGATATCTACACAAGGAAGTGAGGAACACCCCATGACTTCAACCTATCTTTAGTAGCCAGCCTGTTTAGGAGCTAACCAAATTACAAAAACACGTTTAGAATTAGCTTTATTGTTACACAACACTCTTCTCCAAGGAACCTTAACATGATCACCTCGAAGTTTCTTATACACTTTGCTAATAGAAAATTCCCCACTCCCATATTGTTGTTCCAGCCTCCCATGTGCTGTATGATTCCACTGCAACCTAAGATGTTCTTCAGAGCCCTAGAGTGATTTTTGGAAGTTCCCATGATTGCACTGCCAGCTATAATGTTCCTTTCATGTTTGTATTTACTATTACTCGTTTCTTAAAGGGCATTATATATTGACAATTTGCAATTGAAGACGTAATTGGTTTAGGATATGGGCTATTCGTTGAGATACATTATGGGAAAAAAAGGGAAGATGGGGTTATTGTGAAGTGTAACAATTATGTATTTTAGTATGAAGAATTTGAGTCACATGTATGAAATCTATCACAATCTTCACTTTGACTAAATTATGTGAAGTAGTATGTACTAGTGAAATGGCCAAGTCCCATATTGTATATCACTTCATATAGCGATTGTAACAAAATCTAGCAATTCTTATATTTGGGGGGGAAGGGAGTGAACTTCTTTATTTGCTGGCAGTGGCATCCGCTGACAATTTTCTTGATTGTAATATGCTTGACCACAATTCCCTGCTCGATACATTGCTGACAATCTTGTGCTTTTTTCTCTGTAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGTATGTGACAATTGACAACGAGTAGGTTAGAATTTTTAAGGTTTACTCTTACCGTGTTATTTCTCACTTAGTGCTATTGTCACAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAGAGAAACAACCTTTTTGCTCACGAACTGGAGATATGTTTGTGATAGCTTGTTAGCTACTTAGCTGTACTGATGATTGTAAGTCCTGAGAGTGGGATATGAATCTTTAAATGTTTTCATCTCTGTCCTCGATCTTTATTCTACTCTTTTCTATATGTTATCTGACTGGTAAATATATCAATTAACCAGAGCTTCATATCTTCTCTCTGGATTTGAAATACCAAGCCGACATTTCTGGAAGTTTGGTCACTTAGGTGATGTTCAGTTGATCAGTTTGTGATTTATTTCTAATTGTGAATGGTGCAAGTTGCTGGAATGTTTTTTTATCAGTCTCTCTGTCCCAGAATTCAAACAAACAGATAAGAGACTGGATCTTCTTCCAAGAAACTAGAACACTGAGATTTGAACATGAGAAAGTGACATGAGAAAAAAACAGCCCATAAACGACAACCCATGATAGGAACCGAATCCTGTCGTTATTGTGATGAGTTTTACGATAGGTCTAAATCCCGTCGTTATTGTGATGGGTTATACGACAGGGCCCAAATCCCGTCGTTTTTGTGATTTGAGTTTTATGACAGAAAACTTGAACCTGTCCATCACCCACCCGCAAATAATTAAAATCCTACAGCAATCTCATATTTTC

mRNA sequence

ATGGCAAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAGAGAAACAACCTTTTTGCTCACGAACTGGAGATATGTTTGTGATAGCTTGTTAGCTACTTAGCTGTACTGATGATTGTAAGTCCTGAGAGTGGGATATGAATCTTTAAATGTTTTCATCTCTGTCCTCGATCTTTATTCTACTCTTTTCTATATGTTATCTGACTGGTAAATATATCAATTAACCAGAGCTTCATATCTTCTCTCTGGATTTGAAATACCAAGCCGACATTTCTGGAAGTTTGGTCACTTAGGTGATGTTCAGTTGATCAGTTTGTGATTTATTTCTAATTGTGAATGGTGCAAGTTGCTGGAATGTTTTTTTATCAGTCTCTCTGTCCCAGAATTCAAACAAACAGATAAGAGACTGGATCTTCTTCCAAGAAACTAGAACACTGAGATTTGAACATGAGAAAGTGACATGAGAAAAAAACAGCCCATAAACGACAACCCATGATAGGAACCGAATCCTGTCGTTATTGTGATGAGTTTTACGATAGGTCTAAATCCCGTCGTTATTGTGATGGGTTATACGACAGGGCCCAAATCCCGTCGTTTTTGTGATTTGAGTTTTATGACAGAAAACTTGAACCTGTCCATCACCCACCCGCAAATAATTAAAATCCTACAGCAATCTCATATTTTC

Coding sequence (CDS)

ATGGCAAGTTCACTTGATTCTCACATTGAGAGAGGGGAGAGGAGACTATCCTCAAGATACTTTTCATTTCAGATGTCTGTTCTTTATCTTAAGCTGAAGGTGTATGTACTTAAAGGATGTGTATTAGATAGTCCTTCCACTCACCCCGACAACTATTTCTTTATCCAATCGAAGAAGTATCCATGCTTTATTAGATCTTCAATTGTCAACTTTGGGTCAGAGGTGACATTAGGCTCTGGAATCCTGTGCAAGATCTCATCTTCTAAAGTCGGAATAAGGATATCTACATTATACTTATGGCAAAGGGACTTTCTGGTAAATTGCTCCTGGTAG

Protein sequence

MASSLDSHIERGERRLSSRYFSFQMSVLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRSSIVNFGSEVTLGSGILCKISSSKVGIRISTLYLWQRDFLVNCSW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24429Spo24429gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24429.1Spo24429.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24429.1.CDS.3Spo24429.1.CDS.3CDS
Spo24429.1.CDS.2Spo24429.1.CDS.2CDS
Spo24429.1.CDS.1Spo24429.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24429.1.utr3p.1Spo24429.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24429.1.exon.3Spo24429.1.exon.3exon
Spo24429.1.exon.2Spo24429.1.exon.2exon
Spo24429.1.exon.1Spo24429.1.exon.1exon


Homology
[Close]
BLAST of Spo24429.1 vs. NCBI nr
Match: gi|902212332|gb|KNA16933.1| (hypothetical protein SOVF_084720 isoform A [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 9.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

		  

Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668
[Close]
BLAST of Spo24429.1 vs. NCBI nr
Match: gi|902212333|gb|KNA16934.1| (hypothetical protein SOVF_084720 isoform B [Spinacia oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 9.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

		  

Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668
[Close]
BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD59_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

		  

Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668
[Close]
BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBR1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.800e-7
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

		  

Query: 27  VLYLKLKVYVLKGCVLDSPSTHPDNYFFIQSKKYPCFIRS---SIVNFGSEVTLGSGILC 86
           VL+L+LK YVL GC+   P+  P N     S   P  I +   SIVNFGSEVTLGSGI C
Sbjct: 603 VLHLQLKAYVLDGCI---PNNSPINSR-TTSLPNPGSILALDLSIVNFGSEVTLGSGIPC 662

Query: 87  KISSSKVGIR 94
           KIS SKVG+R
Sbjct: 663 KISFSKVGVR 668
The following BLAST results are available for this feature:
BLAST of Spo24429.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902212332|gb|KNA16933.1|9.8e-757.1hypothetical protein SOVF_0847... [more]
gi|902212333|gb|KNA16934.1|9.8e-757.1hypothetical protein SOVF_0847... [more]
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BLAST of Spo24429.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RD59_SPIOL6.8e-757.1Uncharacterized protein OS=Spi... [more]
A0A0K9RBR1_SPIOL6.8e-757.1Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24429.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24429.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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