Spo24509.1 (mRNA) | SpinachBase

Overview


Name	Spo24509.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat-containing protein, putative
Location	SpoScf_00202 : 188157 .. 191927 (+)
Sequence length	663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGCAAGCTACTGTTGGAAGAAAGCGGCATAGCAGATATAGCGGTTTTCAGCTTCGTATCTAGAAATACCAGCTTCTCTGTACGTATGGTACTGAGACTTTGAAATGGCCATGCTTTAAGGAGAAGACAAAGTGGCAGATTGGTTTGCCATGTTTGACCATGATATAAACTGAGGTGTTCCAAATGTTTTAGACTGATTACCACATATTAGGCTATTAGTTATGACTTATGACTGGAAAAAGAGTGACCTGATGATTTGAAAAACAAAATATACTCTCTTAAGTACATATACATGCATGCAAAAACGCACATACGAACTATGCACAGAAAGCAGAGAAAAAAAAAGGACAGATAAGCTTCAAAGACAAGTGGACGCAGAAGAAATCAACTAACCAGATCACGGAACTTCAGAATGTAGAACATCTCAAGATATCGACGAGTCTCCCTTCTCTCTAGTTTAGAGACATATTTCCAAAAACCGTAAACTCCCGCTAATGTCATCAACCTCTCAGAATACTTTAACCAGGTGTACCTGCAATTTTAAAACATAAACTAAGTAAGCAAGTTAAGCATAGGATTTTTTGCCAAAAAGGACCTTTTATAAGCATTTTTTTGCGAGAAAGGACCTTTTATGTCAAAATTGGTGAAATGGGACCTAAAATACAATATTTTTTGTTAAGTGGGACCTTTGCCCGGATTCTTGGAGTCAACCCAAGTTTCTGGCGTTGACTTCGACACGTGGCAGCCGGAAACTGCCACGTGTCAATATCCTTATTTTAAAAAAAAAAAAATTATTTTTTTTCCCAAAAATCATCGTTTTACTGAAACAGTTTTACCCAAAAAAAAAATCGATTCTCGATTCTCTTCTCTCTCCTCTGCTCCTTCAACTCGACGCCATTGTTGAAGATTCAAGGTTGAAGGAAAGTGCTTCTTCACTCAAATTGCTTGCCACGAATTGTTACTCAGGCCTCCACGAATCAGGTATGCTATTTCCCCCCCTCAAAATCCTCTTCAATTGTTGTAATTTTGGGTCGAAAAAATTAGGGTTCTTCCCAAATTTGGGGATTTTGTAATTCGTTGTGTATTTGTGTTTTAGATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTGTTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGTTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTGTTTACAAGAAGATGATTCAGAGTGGAATTGAGCCAACAATTCATACATATATTATGATGATGATGAAATCTTACTTTGATTTTTTTTTTTTTGTGGGTAAAAATGTTTCAGTAAATGATGTTGGTTTTGTAGGGAATTTTTGGGAAAATTTTTATTTTTATTTTTTTTTATTTTTATTTTTTAAATAAGGATATTGACACGTGGCAGTTTCCGGCTGCCACGTGTCGAAGTCAACGCCAGAAACTTGGGTTGACTCCAAGAATCCGGGCAAAGGTCCCACTTAACAAAAAATATTGTATTTTAGGTCCCATTTCACCAATTTTGACATAAAAGGTCCTTTCTCGCAAAAAAATGCTTATAAAAGGTCCTTTTTGGCAAAAAATCCTTAAGCATAACCTGCCTCTAAGTGCTACGCGTGCATTCCAAATCTTTCTGCACTGATACTAACCTTTCTTTGATCCTTTGCAACCCCCCGTCAGAGATTTTACTCCAGTAGCTCGGATCCTCTTTGGACTTGGTAAAAAAATCAGCCATCTTTTCTGCAGCCTGATCAGCATGATATGGATCAATATGAAATCCTGATATTCCATCTTCTATAATCTCAGCCGGACCACCATGGCATGTAGCAAATGTGGGTAGGCCACAAGTCATTGCTTCAACAACTGTTAGCCCAAATGCTTCATAAAATGCAGGCTGCAAGTCATAAATATAGCATCCTATGAGATTTGTTAACAAGGACTTATGTTATGACTTTGATTAGTGAAAGGGCTCTTGAGCTGTCTGAGCAACTCTTTTGGGAAATTAAATTTAAAAGTTCATATTGCAACTTATAACCCCGTTTTTCATACAATTCTGTGCGCCTGTCATTTTAAATACTTATTCTCCTTCATTTGAGAAATGTGGAAAAAAAGTGTTCAGAATTTCTTTTTCACTCAATGTTTTTCCTCTACTTATTATTCTGGATAGACAAGATAATTTCAGGTTTAGCTAAACATTAGACTCTGGATTTAGGAAGGATGAAAACATAGATAAAATTAGAGCATACCTGCACAAAAATACCTCCTTTGTCACAGATGTACCGGTAAAGTTCACCATTTCTCACTCTGTTCGTTTGAGAAGCTATCCACCTAAACTGTCCTTTCAAATTGTACTGCTTGATAAGGTTGTGCATCTTTTCAATTTCAGCAATCTCTTCCCTGTCATTTGACTTTTTTGCATCATTGTACCCAGCAACCACAACCAGATTTGACAGTTCCCTGAGTTTAGCATTCTTTGCATAGCACTCAACCAGTCCTGTTATGTTCTTCACATGGTCTAGCCTTGCCATGGAAAATATTATAGGCTTTGCGGGATCATCTAGTATACCACTGTATCGATGAAAATTCTAGTTAATAAAAATTGCATACCATGCAGAAAGACATGCTAAGTATCATAATGTACAGAGTAATATTTTTTATTTTATTTTTGAGATTGTCTTTGTAGTTGAATATGATCACAGCCTCACAGGTCCATATAATTTTCTACTTTTCAACATGACACAAGTGTTTTTGTTCAAAGAGAGAAAGCAGTTATTTTGTATGATACTGTATGCTAAGAGATGAACAAGAAAAATGGAGATTTATGTCCCAGTCATATAAATGATAGTTCTATGCGATTGGTGCAAGATCAATAACGAGCAAGAGGTTACATGTGTTCTTCGTTCTGTTCTGGATTGAATAAGAGCTCCTCTATGAAGCTATGAAGTGCAGTGAGCCGCTTCCCCTTCTCCGAAAATGGGAAATAGATGGACAAATCAGCCCCGGGTGAGACAATATTAAACTTGGGGTCAAAGACATCAATCCCATGAACCACCCGATACAGCCCTGGCAAAGTGAAAGCCGTATGACTTTCATATTGACCAACAGTATTTTTCCTGAAAGAAACATTATTGTTATCCAGGTGATTTAAAAAGTATAGTAGCATAATTGCTGAGAAAACGCCTTTTTGGTAGAGTTAAGTAGACGTTGTGATAAAAAAAAGGCTAAAAGTTGCTCTGGCGCAGCCTTAAAAGTTAAAATGAATATGGTTCATTTAACCAGGAATTTGGAGCCACTCAGGGATTGAAATATCAGACATCCCAGAACTCTATATTTCAAACACCAAACAGCTCATAA

mRNA sequence

ATGCCATGCAAGCTACTGTTGGAAGAAAGCGGCATAGCAGATATAGCGATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTGTTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGTTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTTTGAATATGATCACAGCCTCACAGGAATTTGGAGCCACTCAGGGATTGAAATATCAGACATCCCAGAACTCTATATTTCAAACACCAAACAGCTCATAA

Coding sequence (CDS)

ATGCCATGCAAGCTACTGTTGGAAGAAAGCGGCATAGCAGATATAGCGATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTGTTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGTTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTTTGAATATGATCACAGCCTCACAGGAATTTGGAGCCACTCAGGGATTGAAATATCAGACATCCCAGAACTCTATATTTCAAACACCAAACAGCTCATAA

Protein sequence

MPCKLLLEESGIADIAIDNVPSKSENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRLNMITASQEFGATQGLKYQTSQNSIFQTPNSS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24509	Spo24509	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24509.1	Spo24509.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24509.1.exon.1	Spo24509.1.exon.1	exon
Spo24509.1.exon.2	Spo24509.1.exon.2	exon
Spo24509.1.exon.3	Spo24509.1.exon.3	exon
Spo24509.1.exon.4	Spo24509.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24509.1.CDS.1	Spo24509.1.CDS.1	CDS
Spo24509.1.CDS.2	Spo24509.1.CDS.2	CDS
Spo24509.1.CDS.3	Spo24509.1.CDS.3	CDS
Spo24509.1.CDS.4	Spo24509.1.CDS.4	CDS

Homology

[Close]

BLAST of Spo24509.1 vs. NCBI nr
Match: gi|902240620|gb|KNA26028.1| (hypothetical protein SOVF_000970 [Spinacia oleracea])

HSP 1 Score: 319.3 bits (817), Expect = 5.200e-84
Identity = 156/178 (87.64%), Postives = 164/178 (92.13%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D + ++ + N  T SVLLSGWCRMKNLMEAG+IWNEMIDQGLNPDVVTHNIMLDG
Sbjct: 400 AQVLYDRLKNRFTPNTKTYSVLLSGWCRMKNLMEAGKIWNEMIDQGLNPDVVTHNIMLDG 459

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LLKVNKKSDAIKLFEVMKVKGP PNVRTYTILIRDLCKHSKLNE VAYFD MTSSGCNPD
Sbjct: 460 LLKVNKKSDAIKLFEVMKVKGPAPNVRTYTILIRDLCKHSKLNEAVAYFDEMTSSGCNPD 519

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FGNLKKMDMVFGLLKE+KEKGYPPDGQLYNALIKLMTNRRMPDDAVR+
Sbjct: 520 AAVYTCLITGFGNLKKMDMVFGLLKEMKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 577

[Close]

BLAST of Spo24509.1 vs. NCBI nr
Match: gi|731336635|ref|XP_010679366.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 290.4 bits (742), Expect = 2.600e-75
Identity = 135/164 (82.32%), Postives = 151/164 (92.07%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD+VTHNIML+GLLKV K+SDAIKLF
Sbjct: 429 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 488

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           E+MK KGP PNVR+YTIL+RDLCKH+K+ E VAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 489 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 548

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 549 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 592

[Close]

BLAST of Spo24509.1 vs. NCBI nr
Match: gi|731336637|ref|XP_010679367.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 290.4 bits (742), Expect = 2.600e-75
Identity = 135/164 (82.32%), Postives = 151/164 (92.07%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD+VTHNIML+GLLKV K+SDAIKLF
Sbjct: 386 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 445

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           E+MK KGP PNVR+YTIL+RDLCKH+K+ E VAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 446 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 505

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 506 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 549

[Close]

BLAST of Spo24509.1 vs. NCBI nr
Match: gi|720008129|ref|XP_010258534.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Nelumbo nucifera])

HSP 1 Score: 260.0 bits (663), Expect = 3.800e-66
Identity = 120/164 (73.17%), Postives = 140/164 (85.37%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           NL T SVLL+GWC++KNLMEAG++WNEMID+GL PD+V HNIML+GLL+  K+S+AIKLF
Sbjct: 415 NLQTYSVLLAGWCKVKNLMEAGKVWNEMIDKGLKPDIVAHNIMLEGLLRGKKRSEAIKLF 474

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           E+MK KGP PNVR+YTILIRDLCK SK+ + V YFD M   GC PD AVYTCLI  FGN 
Sbjct: 475 EIMKAKGPSPNVRSYTILIRDLCKGSKMEQAVEYFDEMLDCGCQPDPAVYTCLIVGFGNQ 534

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMD V+GLLKE+KEKG PPDG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 535 KKMDKVYGLLKEMKEKGCPPDGRTYNALIKLMTNRQMPDDAVRV 578

[Close]

BLAST of Spo24509.1 vs. NCBI nr
Match: gi|225447826|ref|XP_002268129.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Vitis vinifera])

HSP 1 Score: 258.5 bits (659), Expect = 1.100e-65
Identity = 121/164 (73.78%), Postives = 136/164 (82.93%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD++ H+ ML+GLLK  KKSDAIKLF
Sbjct: 371 NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 430

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           EVMK KGP PNVRTYTILIRDLCK  K+ E V YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 431 EVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 490

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 491 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 534

[Close]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2T3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000970 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.600e-84
Identity = 156/178 (87.64%), Postives = 164/178 (92.13%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D + ++ + N  T SVLLSGWCRMKNLMEAG+IWNEMIDQGLNPDVVTHNIMLDG
Sbjct: 400 AQVLYDRLKNRFTPNTKTYSVLLSGWCRMKNLMEAGKIWNEMIDQGLNPDVVTHNIMLDG 459

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LLKVNKKSDAIKLFEVMKVKGP PNVRTYTILIRDLCKHSKLNE VAYFD MTSSGCNPD
Sbjct: 460 LLKVNKKSDAIKLFEVMKVKGPAPNVRTYTILIRDLCKHSKLNEAVAYFDEMTSSGCNPD 519

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FGNLKKMDMVFGLLKE+KEKGYPPDGQLYNALIKLMTNRRMPDDAVR+
Sbjct: 520 AAVYTCLITGFGNLKKMDMVFGLLKEMKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 577

[Close]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121700 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.800e-75
Identity = 135/164 (82.32%), Postives = 151/164 (92.07%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD+VTHNIML+GLLKV K+SDAIKLF
Sbjct: 429 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 488

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           E+MK KGP PNVR+YTIL+RDLCKH+K+ E VAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 489 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 548

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 549 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 592

[Close]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Match: F6H1T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00750 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.600e-66
Identity = 121/164 (73.78%), Postives = 136/164 (82.93%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD++ H+ ML+GLLK  KKSDAIKLF
Sbjct: 77  NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 136

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           EVMK KGP PNVRTYTILIRDLCK  K+ E V YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 137 EVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 196

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 197 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 240

[Close]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Match: A5AVH1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028672 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.600e-66
Identity = 121/164 (73.78%), Postives = 136/164 (82.93%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD++ H+ ML+GLLK  KKSDAIKLF
Sbjct: 371 NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 430

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           EVMK KGP PNVRTYTILIRDLCK  K+ E V YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 431 EVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 490

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 491 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 534

[Close]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Match: B9I9J7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11650g PE=4 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 2.200e-65
Identity = 118/164 (71.95%), Postives = 141/164 (85.98%), Query Frame = 1


		  
Query: 26  NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 85
           NL T +VLL+GWCR+KNLMEAG IWNEM+D+G  PD+VTHNIML+GLL+  K+SDAIK F
Sbjct: 314 NLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFF 373

Query: 86  EVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 145
           EVMK KGP P+VR+YTILIRDLCK +K+ E V YF  M  SGC+PDAAVYTCL+T +GN 
Sbjct: 374 EVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNH 433

Query: 146 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           K+MDMV+ LLKE+KEKG PPDG+ YNALIKLMT++RMPDDAVR+
Sbjct: 434 KRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRI 477

[Close]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.600e-61
Identity = 109/178 (61.24%), Postives = 138/178 (77.53%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MIDQGL PD+V HN+ML+G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+ A R+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460

[Close]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.100e-60
Identity = 107/178 (60.11%), Postives = 136/178 (76.40%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD+V HN+ML+G
Sbjct: 282 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 341

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 342 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459

[Close]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.100e-60
Identity = 107/178 (60.11%), Postives = 136/178 (76.40%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD+V HN+ML+G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 342

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 343 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460

[Close]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 3.700e-21
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1


		  
Query: 29  TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLFEVM 88
           T S+LL GW +  NL +A E++ EMID G +PD+VT++IM+D L K  +  +A+ +   M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 89  KVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKM 148
                 P    Y++L+      ++L E V  F  M  SG   D AV+  LI  F    +M
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 149 DMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDA 187
             V+ +LKE+K KG  P+ +  N +++ +  R   D+A
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEA 396

[Close]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.400e-20
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 1


		  
Query: 29  TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLFEVM 88
           T +VL  GWCR+++  +A ++  EMI+ G  P+  T+   +D   +     +A  LF+ M
Sbjct: 270 TFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFM 329

Query: 89  KVKGPP---PNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 148
             KG     P  +T+ ++I  L K+ K  E       M S+GC PD + Y  +I      
Sbjct: 330 ITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMA 389

Query: 149 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           +K+D  +  L E+  KGYPPD   YN  ++++   R  D+A++L
Sbjct: 390 EKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKL 433

[Close]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 237.3 bits (604), Expect = 9.200e-63
Identity = 109/178 (61.24%), Postives = 138/178 (77.53%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MIDQGL PD+V HN+ML+G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+ A R+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460

[Close]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 233.0 bits (593), Expect = 1.700e-61
Identity = 107/178 (60.11%), Postives = 136/178 (76.40%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD+V HN+ML+G
Sbjct: 282 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 341

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 342 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459

[Close]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 233.0 bits (593), Expect = 1.700e-61
Identity = 107/178 (60.11%), Postives = 136/178 (76.40%), Query Frame = 1


		  
Query: 13  ADIAIDNVPSK-SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDG 72
           A +  D +  + + N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD+V HN+ML+G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 342

Query: 73  LLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPD 132
           LL+  KKSDAIKLF VMK KGP PNVR+YTI+IRD CK S +   + YFD M  SG  PD
Sbjct: 343 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 133 AAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           AAVYTCLIT FG  KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460

[Close]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.100e-22
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1


		  
Query: 29  TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLFEVM 88
           T S+LL GW +  NL +A E++ EMID G +PD+VT++IM+D L K  +  +A+ +   M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 89  KVKGPPPNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKM 148
                 P    Y++L+      ++L E V  F  M  SG   D AV+  LI  F    +M
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 149 DMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDA 187
             V+ +LKE+K KG  P+ +  N +++ +  R   D+A
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEA 396

[Close]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Match: AT1G73400.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.300e-21
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 1


		  
Query: 29  TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLFEVM 88
           T +VL  GWCR+++  +A ++  EMI+ G  P+  T+   +D   +     +A  LF+ M
Sbjct: 270 TFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFM 329

Query: 89  KVKGPP---PNVRTYTILIRDLCKHSKLNEVVAYFDGMTSSGCNPDAAVYTCLITRFGNL 148
             KG     P  +T+ ++I  L K+ K  E       M S+GC PD + Y  +I      
Sbjct: 330 ITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMA 389

Query: 149 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRL 190
           +K+D  +  L E+  KGYPPD   YN  ++++   R  D+A++L
Sbjct: 390 EKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKL 433

The following BLAST results are available for this feature:

BLAST of Spo24509.1 vs. NCBI nr
BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
BLAST of Spo24509.1 vs. TAIR (Arabidopsis)

BLAST of Spo24509.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240620\|gb\|KNA26028.1\|	5.2e-84	87.6	hypothetical protein SOVF_0009...	[more]
gi\|731336635\|ref\|XP_010679366.1\|	2.6e-75	82.3	PREDICTED: pentatricopeptide r...	[more]
gi\|731336637\|ref\|XP_010679367.1\|	2.6e-75	82.3	PREDICTED: pentatricopeptide r...	[more]
gi\|720008129\|ref\|XP_010258534.1\|	3.8e-66	73.1	PREDICTED: pentatricopeptide r...	[more]
gi\|225447826\|ref\|XP_002268129.1\|	1.1e-65	73.7	PREDICTED: pentatricopeptide r...	[more]

BLAST of Spo24509.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2T3_SPIOL	3.6e-84	87.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8CCN2_BETVU	1.8e-75	82.3	Uncharacterized protein OS=Bet...	[more]
F6H1T3_VITVI	7.6e-66	73.7	Putative uncharacterized prote...	[more]
A5AVH1_VITVI	7.6e-66	73.7	Putative uncharacterized prote...	[more]
B9I9J7_POPTR	2.2e-65	71.9	Uncharacterized protein (Fragm...	[more]

BLAST of Spo24509.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PP293_ARATH	1.6e-61	61.2	Pentatricopeptide repeat-conta...	[more]
PP382_ARATH	3.1e-60	60.1	Pentatricopeptide repeat-conta...	[more]
PP294_ARATH	3.1e-60	60.1	Pentatricopeptide repeat-conta...	[more]
PP129_ARATH	3.7e-21	34.8	Pentatricopeptide repeat-conta...	[more]
PP117_ARATH	2.4e-20	31.7	Pentatricopeptide repeat-conta...	[more]

BLAST of Spo24509.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G62470.1	9.2e-63	61.2	Pentatricopeptide repeat (PPR)...	[more]
AT5G14820.1	1.7e-61	60.1	Pentatricopeptide repeat (PPR)...	[more]
AT3G62540.1	1.7e-61	60.1	Pentatricopeptide repeat (PPR)...	[more]
AT1G77360.1	2.1e-22	34.8	Tetratricopeptide repeat (TPR)...	[more]
AT1G73400.1	1.3e-21	31.7	Pentatricopeptide repeat (PPR)...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 32..58 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 60..109 score: 8.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 121..180 score: 4.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 31..62 score: 1.5E-5coord: 99..132 score: 7.1E-7coord: 63..97 score: 2.9E-5coord: 134..166 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 166..202 score: 5.799coord: 96..130 score: 11.071coord: 131..165 score: 9.821coord: 26..60 score: 10.106coord: 61..95 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 26..189 score: 6.7
None	No IPR available	PANTHER	PTHR24015:SF429	SUBFAMILY NOT NAMED	coord: 26..189 score: 6.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043631	RNA polyadenylation
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity