Spo24554.1 (mRNA)

Overview
NameSpo24554.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 11013808 .. 11018470 (+)
Sequence length1010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGTAATGTTTTCTCCCTCTTCTATACTTTCATGATCTTTTCCTTTAAAAATAAATTAGGGTTTGATTTAGCCTCTTTGGTTCAAGTGATTGAAATTGTGTTCAGATAACGCTGACAATTTTTTGAATTGCCATTATCTAATTCGTTCTTTGTATGTTCCGTAAGGTATTTTTCTTTAATTAATAATTTAATACCATTAATATCAAGCCTTTTTTGTATGAATTGAATTATTAGTTGAATCTTGTATTCCAGATTGAAACTCCTGTAATTTATTCAAATTGGAAGGCAAAACTGATTTTATTCTCTTCTGCGTTTGGGGTAAATCTTGGGCATACGGGTTATAGTGATTGTGAAGAAATTGATTCCAACATGAGAGAACGATATTGAATGATTTAGAGCTGTTAGACACTAGGCTTGCTAAGTAGAGGTTTTCTCATACTGAAACTTTGGTGGAAGGAAATGGAAAGGGTTTGGCTGAAGAATTGGATGGTTCTAGAAGGATATATGAAACTTACAAGCAGGATTTACTTCTTGTTAATAGTTGTAATTATAGTTTTGGAGCTCACGATGTAAAAGAACAGGTTTTTCACTACTCTTTCTTGTAGGGAATATGGAAGTCGTGCCTAATATATTTTCTTTTATTATAGAAGTTACAACTTTGTTTTTTTCACCTTTCAAAGTTTGAGAAAAATATGTTTCCAAGTTCAAATTCAGTTGATCATAACGAAAAATAGATGTGATAAGTACAGATAAGTTAATTTCAAGTGAAAAGAATGAATTTTTAGTAATCAGAGTGGTAGTCTTCTTAAGCTAGCTCAACTGAGTACAAAATTTGACTATGCTCTAGATTTCATATACACTTTTCCTGTAATTTTCAGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGGTGATACTGCATTACTGAGTACCTGGAATCTGCGGCTTTCAGCAAAGTTGTTCAGGCTCATGATATCCAGACTGGAGTTTATGTTTGCCTGAAAGTCATTAGAAATGACAGATTTTGTTTGTAAAAGTTTGGACGAAATCGAACTTCTCAAGTATGTCAACAAGAATGATCCTGCAGATAAGCACCTTTTACATCTCTATGACTACTTTTACCATCTCTTCCCCCCCCCCCCCCCGNTCCCCCCCCCCCCCATGGGTCCGTGACATGCAGGCTTAGATTTTTATTGTCCTATACGAAGTGATTAATTCCAGATTCTTGTTTACGTATACAGAAGCACCTTTTCATTGTATGTGAACTTCTTCGAGCTAATATATATGACTTTCAGAAATATAATATAGAATCTGGTGGAGAACCCTACTTTACAATGAGTAGATTGCAGGTACTTGTTCTACTAAGTTGCATTTATCTGTTAATGGAACCCATGAAACTGGTTTTTAACGATGTTTTTTAGCATTTAAATGTAAGGAGCTCCTATAAATCCTGTTTTTGTAAATCATAGCACGGGTCCTAATTGTCGTTGGCGCTTTTCACCCTAATATCACTTCAAGTTGTTTTCTATTTCCTGCCTGGTTTTAAGTATGGCATCACGACCCTAATATTTTTTCTTTGATATATGAAGATTTGTTTTAATTTTATAAGAACCAATTAGTCTATGGTTAGGTGGGATTCAATTTGCCTCAGCGCAATTGCCTCATCTGGAGCACTTATAGGCTTTTTGGACTTTTCATATGTGACTTTGTTTCTGAGTTAGGTAGTTAAACAAAATGCAGGCTCTAAATTTAAACGATCCAGAGCTCAAAGACCTGAACCTTACTTCATGTAGAAACTTGCAGGTTTGTATTTTAGATGGTCTAATTTACAATGGATGATTTTAGCAAATACTGCTAGTTGTTAAGGTTTCTAATGAGGTTTCTTGCTTTATTTAGAGAGGTTACTACTCTAGTTTCCCAATTTGGAATGCGTCAAATTTCCTTGCGTTAGATTATTGAAACTGAGGTTATATCAATTCCCTTGTACAAGTTCAATGATAAACCTTCCCCTGACTATGTTGGTCTTAATTACTGTTGTTTCATATGTTGATTATGAAGTATAACATGAAAAGGGTTCCATTGAAATTTTATGCAATAAAAAAATCTTCTTGTAAAGAAGCTGGCCAATGCCTAGTAAGTTAGTAGCCTTAGTAAAGAAATCTAGTGGATAATTTGGTCAGAAGCTTTTGTTTGTTAGTGTTATGTTCAAAATGAAAGCAACCTTGTTTATATTAACTGAAAAGATCAATCAGTTTTGACATTCATTGTGAAATTCTTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGTACATATTATACTTTGTATTACTTGCATAAGATACTAAATTATCATGGTTTTTATGTTTAAATTGCCGGTGCGGTGGTGCAAAGTCTTTTTTGTTTGTTAAATTGTCGGTGCGATAGTACATACCCATCCTGCTCATGTTTGTCAAAGAATTTAGATTTATTTTGGATTGTTTTGCAAAAGAGTTATTCTATAGTATGAGCTAGATTGGTTTAAGAAATAACTTTGCTTGTTTCTTTGCTAGTTTTTTGCAAGCTATAATTTTGTTTTAATTTAACCGAGCAACGCTTTAATGTGAATCAACAAAACTAGTATTACTAGGTAGCATTCGGCATAACTTACCAGGGTTTTGAACATTGTTGTTGGGGGATGAAGAAGATGTACATTACTTTTCCATATAGCACTTTCTTTCGGACGTTCATCTCATCTTGAACTTACCTACCTGGCAACGTAAAAGTATTTTTTGTTCCATATACTGCGACAAAGGAATACTTTCAGTTGCTCTAAATTTTTTTTGTTCCTTAGTTCTAAGTTTCTAATGTCTGGCAAGAGATAGTACATAGTCATGCAATAATCCCCTTTCATTCCTTCCCCTGTTATCAGCATGCAATATTGTTCTATTGTTAAAATATTACCTGAAAAGAAAACCTAGTATATTTAATTTCTTTTATTCCACCACTTTGCTGATTAACTATATATGCTTAATTTTTTGTTCATTCCTGGCATGAAGACCACCAGTCACGATATTTAGGTGAATAGGTTAAGTCAGTGAATAACGTTAATTAGGCTTTATCTCCACACAAGCTAATACTGGCAGTCTTCTCAAATAGTGTGTAATAGTCGTATAGGGGCACTTTTGGCATTGCATTATGATTCTATTACTTGGTAGCTTGAGGGATAAGTTAACTGGTTAGAGTAGAGAGGGAAGAAAAAGAAGCAGAATATCTGTACATATGGAGGATATAAGTGAGAACCATAATCTTCTTTTATATTTAAATATTCAGTACATTACATAATTACATAATGGTGGTCGTATGTGGTTGCTGACATCTTTGTTTTGTACTTTTGTCAATGGTGTAGGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACGTTTACGACAATCTGAGAAACATACAGAATTGGTTAAGGAGCAAGCTCCTGAGCCAGATGATGTGTACCGGCCATTTTCCAAGAAACGTTCTTGTAAAGATGGATGTCTAGAGTGGTAATAATAGTCGCAAGCACACATTTCTGACTGTTCTATTTCTTATACCAGTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGGTCTGGTTCCCCTTCTTGGCAAGCATTTTAACCGCATAAGTGATTATTCCATCTCCCGAGTTTCTGTGAAAATTGCTAGTTCAATCTGCCTGTCATAGAAAAATTTTAGAATCGTAATTTTTTTCTTCTTTTAATCATCATTTTAATTGGGCCTTAAACTTATGTTAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

mRNA sequence

AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

Coding sequence (CDS)

ATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAG

Protein sequence

MRNNICLFGHVLKRVVAHSRCGIADKKVPLESQFLSKRMAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHLCLCKSCQSVPTGDFKIWREEIKEEEGLLKSAWKATLKSSQAFVGLHFCI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24554Spo24554gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24554.1Spo24554.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24554.1.exon.1Spo24554.1.exon.1exon
Spo24554.1.exon.2Spo24554.1.exon.2exon
Spo24554.1.exon.3Spo24554.1.exon.3exon
Spo24554.1.exon.4Spo24554.1.exon.4exon
Spo24554.1.exon.5Spo24554.1.exon.5exon
Spo24554.1.exon.6Spo24554.1.exon.6exon
Spo24554.1.exon.7Spo24554.1.exon.7exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24554.1.utr5p.1Spo24554.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24554.1.CDS.1Spo24554.1.CDS.1CDS
Spo24554.1.CDS.2Spo24554.1.CDS.2CDS
Spo24554.1.CDS.3Spo24554.1.CDS.3CDS
Spo24554.1.CDS.4Spo24554.1.CDS.4CDS
Spo24554.1.CDS.5Spo24554.1.CDS.5CDS
Spo24554.1.CDS.6Spo24554.1.CDS.6CDS
Spo24554.1.CDS.7Spo24554.1.CDS.7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24554.1.utr3p.1Spo24554.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo24554.1 vs. NCBI nr
Match: gi|902197033|gb|KNA13297.1| (hypothetical protein SOVF_118020 [Spinacia oleracea])

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 

		  

Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38
[Close]
BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3B9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.000e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 

		  

Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38
The following BLAST results are available for this feature:
BLAST of Spo24554.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902197033|gb|KNA13297.1|5.7e-1197.3hypothetical protein SOVF_1180... [more]
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BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R3B9_SPIOL4.0e-1197.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24554.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24554.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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