Spo24633.1 (mRNA) | SpinachBase

Overview


Name	Spo24633.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L19, chloroplastic (CL19) (Precursor)
Location	SpoScf_72201 : 107 .. 454 (-)
Sequence length	348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

mRNA sequence

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Coding sequence (CDS)

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Protein sequence

ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24633	Spo24633	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24633.1	Spo24633.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24633.1.CDS.1	Spo24633.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24633.1.exon.1	Spo24633.1.exon.1	exon

Homology

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BLAST of Spo24633.1 vs. NCBI nr
Match: gi|75107094|sp|P82413.2|RK19_SPIOL (RecName: Full=50S ribosomal protein L19, chloroplastic; AltName: Full=CL19; Flags: Precursor)

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

[Close]

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|731332290|ref|XP_010677124.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.5 bits (358), Expect = 4.600e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123

[Close]

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|1000941993|ref|XP_015582459.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

[Close]

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|223528581|gb|EEF30602.1| (50S ribosomal protein L19, putative [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

[Close]

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR20_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150800 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

[Close]

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CE33_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105130 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123

[Close]

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: B9T0L9_RICCO (50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_0192750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.700e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

[Close]

BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.000e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

The following BLAST results are available for this feature:

BLAST of Spo24633.1 vs. NCBI nr
BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
BLAST of Spo24633.1 vs. TAIR (Arabidopsis)

BLAST of Spo24633.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|75107094\|sp\|P82413.2\|RK19_SPIOL	1.6e-52	100.	RecName: Full=50S ribosomal pr...	[more]
gi\|731332290\|ref\|XP_010677124.1\|	4.6e-31	72.5	PREDICTED: 50S ribosomal prote...	[more]
gi\|1000941993\|ref\|XP_015582459.1\|	3.9e-6	45.3	PREDICTED: 50S ribosomal prote...	[more]
gi\|223528581\|gb\|EEF30602.1\|	3.9e-6	45.3	50S ribosomal protein L19, put...	[more]

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QR20_SPIOL	1.1e-52	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CE33_BETVU	3.2e-31	72.5	Uncharacterized protein OS=Bet...	[more]
B9T0L9_RICCO	2.7e-6	45.3	50S ribosomal protein L19, put...	[more]

BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RK19_SPIOL	1.0e-54	100.	50S ribosomal protein L19, chl...	[more]

BLAST of Spo24633.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome