Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCATATCTCTTTAATTTTTTTCACACATGATTATTTTTTTTCTTTCTCACTTATCCCACTTTAATGTTTTCAATTATTTTCCTTTTTCTTCTTGTCCCCCTTCTTTCTCAACTCTCTCCTATGTCATTATAAATACACCAAAGGCAAACATATCTACCCTTCTTTATATCTTCCTCCTCTTTTCATCTCCTCCTTTGAAAACAGAAAATTAATTTTTTTTCAATTAAAAAAACAGAATGGGAACAACATCAGAATCAAATATCAAGATCATAGTTGAGAAAAATCCTTCAGAAGCTCGTTTATCAGAACTTGGCATTAAATCTTGGCCTAAGTATGTATCATTCTCTTTAATTACTTTTTGAGAACTAAATTATCATAGATTATGTAAATATAATCTTGTTTTTATATGCTAATCTATTCTAACCATAAATACAAGATTATATTTACATAATCCTTCACTAAAATTATTTGATTTTGTTTTTCTACTCTGTACGAGTACAGAGTTAATTAATAATAGTCACGCTGATAGTGTAATTTGAATTTGTGCAGATGGGGTTGTCCACCAGGGAAAATGACACTGAAATATGATGCAACAGAAACATGTTACTTTGTGAGAGGGAAAGTTAAGGCATACCCTAAAAATAAAGGGTCAACAAATGATGAAGGTGTTGTAGAGTTTGGGGCAGGAGATGTTGTCATTTTTCCAAAGGGACTTAGTTGCATCTGGGATGTTTCTGTTGCTGTTGATAAATTCTACAAGTTTGATCCTCCTTAATTCATACTTTTAATTAGCATAGTAATTAATTAACATAATTAATCTTTTTTTATGTTGCGTTGTGTTCAGAAAGTATTTTTACTTGGTTAATTATTACGTACTCTCTCCGTTTCTAAATATTTGTCGTTGTAGGGACGGAGTAGATCTTAAGTTAAGTTTATGTATGTGTTCCAAGAATCTTGGAAATATTATTACAAAAGTAATTAGTCAAAGTTTTTTTTTCCCACTTAATTATTGTTTTAAATTTTTCAGTTTGTATAAGTTGTGAAATCAAGACAATTTGAATGGAGTAGCATTTATATGGAGTTTGAAT TTTCATATCTCTTTAATTTTTTTCACACATGATTATTTTTTTTCTTTCTCACTTATCCCACTTTAATGTTTTCAATTATTTTCCTTTTTCTTCTTGTCCCCCTTCTTTCTCAACTCTCTCCTATGTCATTATAAATACACCAAAGGCAAACATATCTACCCTTCTTTATATCTTCCTCCTCTTTTCATCTCCTCCTTTGAAAACAGAAAATTAATTTTTTTTCAATTAAAAAAACAGAATGGGAACAACATCAGAATCAAATATCAAGATCATAGTTGAGAAAAATCCTTCAGAAGCTCGTTTATCAGAACTTGGCATTAAATCTTGGCCTAAATGGGGTTGTCCACCAGGGAAAATGACACTGAAATATGATGCAACAGAAACATGTTACTTTGTGAGAGGGAAAGTTAAGGCATACCCTAAAAATAAAGGGTCAACAAATGATGAAGGTGTTGTAGAGTTTGGGGCAGGAGATGTTGTCATTTTTCCAAAGGGACTTAGTTGCATCTGGGATGTTTCTGTTGCTGTTGATAAATTCTACAAGTTTGATCCTCCTTAATTCATACTTTTAATTAGCATAGTAATTAATTAACATAATTAATCTTTTTTTATGTTGCGTTGTGTTCAGAAAGTATTTTTACTTGGTTAATTATTACGTACTCTCTCCGTTTCTAAATATTTGTCGTTGTAGGGACGGAGTAGATCTTAAGTTAAGTTTATGTATGTGTTCCAAGAATCTTGGAAATATTATTACAAAAGTAATTAGTCAAAGTTTTTTTTTCCCACTTAATTATTGTTTTAAATTTTTCAGTTTGTATAAGTTGTGAAATCAAGACAATTTGAATGGAGTAGCATTTATATGGAGTTTGAAT ATGGGAACAACATCAGAATCAAATATCAAGATCATAGTTGAGAAAAATCCTTCAGAAGCTCGTTTATCAGAACTTGGCATTAAATCTTGGCCTAAATGGGGTTGTCCACCAGGGAAAATGACACTGAAATATGATGCAACAGAAACATGTTACTTTGTGAGAGGGAAAGTTAAGGCATACCCTAAAAATAAAGGGTCAACAAATGATGAAGGTGTTGTAGAGTTTGGGGCAGGAGATGTTGTCATTTTTCCAAAGGGACTTAGTTGCATCTGGGATGTTTCTGTTGCTGTTGATAAATTCTACAAGTTTGATCCTCCTTAA MGTTSESNIKIIVEKNPSEARLSELGIKSWPKWGCPPGKMTLKYDATETCYFVRGKVKAYPKNKGSTNDEGVVEFGAGDVVIFPKGLSCIWDVSVAVDKFYKFDPP Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo24673.1 vs. NCBI nr
Match: gi|902159051|gb|KNA06294.1| (hypothetical protein SOVF_182440 [Spinacia oleracea]) HSP 1 Score: 229.2 bits (583), Expect = 3.400e-57 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
BLAST of Spo24673.1 vs. NCBI nr
Match: gi|731326891|ref|XP_010674248.1| (PREDICTED: uncharacterized protein LOC104890448 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 199.5 bits (506), Expect = 2.900e-48 Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 1
BLAST of Spo24673.1 vs. NCBI nr
Match: gi|703120844|ref|XP_010102191.1| (hypothetical protein L484_024472 [Morus notabilis]) HSP 1 Score: 162.5 bits (410), Expect = 3.900e-37 Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1
BLAST of Spo24673.1 vs. NCBI nr
Match: gi|225437941|ref|XP_002268868.1| (PREDICTED: uncharacterized protein LOC100241271 [Vitis vinifera]) HSP 1 Score: 162.2 bits (409), Expect = 5.100e-37 Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Spo24673.1 vs. NCBI nr
Match: gi|694410266|ref|XP_009379734.1| (PREDICTED: uncharacterized protein LOC103968120 [Pyrus x bretschneideri]) HSP 1 Score: 161.4 bits (407), Expect = 8.700e-37 Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_182440 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 2.400e-57 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPD7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g077310 PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48 Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 1
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Match: W9RQL7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024472 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 2.700e-37 Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Match: D7U396_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04620 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 3.600e-37 Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Match: A0A068U5Q3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016297001 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 6.700e-36 Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Match: AT4G28703.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 139.8 bits (351), Expect = 9.600e-34 Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 1
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Match: AT3G04300.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 135.2 bits (339), Expect = 2.400e-32 Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 1
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Match: AT4G10300.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 131.0 bits (328), Expect = 4.500e-31 Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 1
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Match: AT4G10280.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16 Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Match: AT4G10290.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 69.3 bits (168), Expect = 1.600e-12 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24673.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24673.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24673.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo24673.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
|