Spo24707.1 (mRNA) | SpinachBase

Overview


Name	Spo24707.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I P700 chlorophyll a apoprotein A1 (1.97.1.12) (PSI-A) (PsaA)
Location	chr4 : 55156073 .. 55156745 (-)
Sequence length	501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTNTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTCAACCGATATACAAAGAGTTCATTGAATAAAGATATTCCTGAACAGACATAATTGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

mRNA sequence

ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

Coding sequence (CDS)

ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

Protein sequence

MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEEISRKIFSAHFGQLSIIFLWLSAWLSDPTHIGPSAQASQKVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24707	Spo24707	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24707.1	Spo24707.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24707.1.CDS.3	Spo24707.1.CDS.3	CDS
Spo24707.1.CDS.2	Spo24707.1.CDS.2	CDS
Spo24707.1.CDS.1	Spo24707.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24707.1.exon.3	Spo24707.1.exon.3	exon
Spo24707.1.exon.2	Spo24707.1.exon.2	exon
Spo24707.1.exon.1	Spo24707.1.exon.1	exon

Homology

[Close]

BLAST of Spo24707.1 vs. NCBI nr
Match: gi|11497525|ref|NP_054933.1| (photosystem I P700 chlorophyll a apoprotein A1 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 1.100e-49
Identity = 100/113 (88.50%), Postives = 100/113 (88.50%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. NCBI nr
Match: gi|167391805|ref|YP_001671683.1| (photosystem I P700 chlorophyll a apoprotein A1 [Carica papaya])

HSP 1 Score: 203.0 bits (515), Expect = 4.100e-49
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFEAWAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEAWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. NCBI nr
Match: gi|910354317|ref|YP_009160802.1| (photosystem I P700 apoprotein A1 (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 203.0 bits (515), Expect = 4.100e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. NCBI nr
Match: gi|567877487|ref|XP_006431326.1| (hypothetical protein CICLE_v10030467mg, partial [Citrus clementina])

HSP 1 Score: 202.6 bits (514), Expect = 5.400e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. NCBI nr
Match: gi|697964761|ref|YP_009059349.1| (photosystem I P700 apoprotein A1 (chloroplast) [Citrus aurantiifolia])

HSP 1 Score: 202.6 bits (514), Expect = 5.400e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: B1A935_CARPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Carica papaya GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFEAWAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEAWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8F4_9CARY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Haloxylon persicum GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K874_9CARY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Haloxylon ammodendron GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A088DBP3_CITAU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus aurantiifolia GN=psaA PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.700e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A159BNK1_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus platymamma GN=psaA PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.700e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.800e-52
Identity = 100/113 (88.50%), Postives = 100/113 (88.50%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.400e-51
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_OENEH (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri GN=psaA PE=3 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 4.400e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_DRIGR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Drimys granadensis GN=psaA PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.500e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WA+PGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_COFAR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.500e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 201.1 bits (510), Expect = 5.500e-52
Identity = 96/113 (84.96%), Postives = 99/113 (87.61%), Query Frame = 1


		  
Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFE WAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113

[Close]

BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1


		  
Query: 32  FSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEE-ISRKIFSAHFGQLSIIFLWLS---- 91
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + IF++HFGQL+IIFLW S    
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67

Query: 92  ---------AWLSDPTHIGPSAQA------SQKVTEACK--GFLGP 116
                     W+ DP H+ P A A       Q   EA    G LGP
Sbjct: 68  HVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGP 112

The following BLAST results are available for this feature:

BLAST of Spo24707.1 vs. NCBI nr
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
BLAST of Spo24707.1 vs. TAIR (Arabidopsis)

BLAST of Spo24707.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|11497525\|ref\|NP_054933.1\|	1.1e-49	88.5	photosystem I P700 chlorophyll...	[more]
gi\|167391805\|ref\|YP_001671683.1\|	4.1e-49	85.8	photosystem I P700 chlorophyll...	[more]
gi\|910354317\|ref\|YP_009160802.1\|	4.1e-49	87.6	photosystem I P700 apoprotein ...	[more]
gi\|567877487\|ref\|XP_006431326.1\|	5.4e-49	86.7	hypothetical protein CICLE_v10...	[more]
gi\|697964761\|ref\|YP_009059349.1\|	5.4e-49	86.7	photosystem I P700 apoprotein ...	[more]

BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
B1A935_CARPA	2.9e-49	85.8	Photosystem I P700 chlorophyll...	[more]
A0A0K0K8F4_9CARY	2.9e-49	87.6	Photosystem I P700 chlorophyll...	[more]
A0A0K0K874_9CARY	2.9e-49	87.6	Photosystem I P700 chlorophyll...	[more]
A0A088DBP3_CITAU	3.7e-49	86.7	Photosystem I P700 chlorophyll...	[more]
A0A159BNK1_9ROSI	3.7e-49	86.7	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSAA_SPIOL	6.8e-52	88.5	Photosystem I P700 chlorophyll...	[more]
PSAA_CITSI	3.4e-51	86.7	Photosystem I P700 chlorophyll...	[more]
PSAA_OENEH	4.4e-51	85.8	Photosystem I P700 chlorophyll...	[more]
PSAA_DRIGR	7.5e-51	85.8	Photosystem I P700 chlorophyll...	[more]
PSAA_COFAR	7.5e-51	85.8	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
ATCG00350.1	5.5e-52	84.9	Photosystem I, PsaA/PsaB prote...	[more]
ATCG00340.1	8.0e-11	41.5	Photosystem I, PsaA/PsaB prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	GENE3D	1.20.1130.10		coord: 3..101 score: 1.6
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 32..98 score: 7.8
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 13..101 score: 1.02
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 27..100 score: 1.5
None	No IPR available	PANTHER	PTHR30128:SF8	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 27..100 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity