Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTTCGAGTCCGAGTCGCGGCATGGCATCTTACAAATTCTCAAAAAATTTCAATAGCCCTCTAACCTATAATGAAAATGAAATAAATTTTTGTGCTGATTTTCATTTCATAATTTGGAATTGAGGGATTTCTTTTTTTTTATATATATTTTATATGATATTTTCTACTTTAGAGCATATTTTAACTCATATTTCTTTTTCAACGGTTTCCGTTGTAATTACACTCCATTTGATAACTTTATTAGTCAATGAAATAGTGGGACTATATAATTCATTAGAAAAAGGCATGCTAGTTACTTTTTTCTGTATAACAGGATTATTAGTTACTCGTTGGGTTTATTGGAAGCATTTCCCATTAAGTGATCTATATGAATCATTAATCTTCCTTTCCTGGAGTTTCTACCTTATTCATATGATTCCATCTTTTTTAAAAAAAGAGAAAAATTCTTTAAATGTAATAACTGCACCAAGTGCTATTTTTACCCAAGGATTTGCTACATCGGGCCTATTAACTGAAATGCATCAATCCGGAATATTAGTACCCGCCCTACAATCACAGTGGTTAATGATGCATGTAAGTATGATGGTATTGGGTTATGCAGCTCTTTTAGGCGGATCATTATTATCTGTAACACTTCTAATTATTATATTTCAAAAAGATTTAATACAAGTTTTTGATAAACGAAAACATTTATTAAATGAGTCATTTTTCTTCGGTGAGATTCAATACATAAATGAAAAAAGCAATATAGTACAAAATGCTTCGCCCTCTTATGTTCGAAATTATTACAGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGTTATTAGTCTAGGATTTATCTTTTTAACCATAGGTATTCTTTCAGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCGTTTATTACTTGGACCATATTTGCAATTTATTTACATATTCGAACAAATAAAAATTTGCGGGGTGCAAATTCTGCAATTGTGGCTTTTATAGGCTTTCTTATAATTTGGATATGCTATTTTGGGGTTAATCTATTAGGAATAGGGCTACATAGTTATGGTTCATTTACATTAACGCTTAATTAAATGAAAGAAAGAGCCTTACTAATACAAATCTAATACAAATATAGCATCAAGTAATAAGCAAGTTTCTTATAAACAAGTGAGAACCATTTAAATCATGATTTAAATGGTTCTCACAACCGTCAAAAATGCCTGATTATAATTTCTTTTCTAATGACCCTGTTTTTCAGGGTAAGAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG MGYYDFKEAAMVKLVDTLLLGSSARASRSQLIEQLDHWSYRGQYGPMRHGGHIGTGTQRKLGQRISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLFPNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum]) HSP 1 Score: 215.7 bits (548), Expect = 7.100e-53 Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|674871092|emb|CDY63594.1| (BnaUnng00820D [Brassica napus]) HSP 1 Score: 213.0 bits (541), Expect = 4.600e-52 Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|78103323|ref|YP_358637.1| (hypothetical protein PhapfoPp091 [Phalaenopsis aphrodite subsp. formosana]) HSP 1 Score: 209.5 bits (532), Expect = 5.100e-51 Identity = 102/131 (77.86%), Postives = 107/131 (81.68%), Query Frame = 1
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|1000955455|ref|XP_015577855.1| (PREDICTED: uncharacterized protein LOC107261652 [Ricinus communis]) HSP 1 Score: 203.8 bits (517), Expect = 2.800e-49 Identity = 99/130 (76.15%), Postives = 104/130 (80.00%), Query Frame = 1
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|703133119|ref|XP_010105288.1| (hypothetical protein L484_000614 [Morus notabilis]) HSP 1 Score: 191.0 bits (484), Expect = 1.900e-45 Identity = 95/129 (73.64%), Postives = 100/129 (77.52%), Query Frame = 1
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A075VX86_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf132a PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 5.000e-53 Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: M1D939_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 5.000e-53 Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZTA1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.200e-52 Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A078G2W2_BRANA (BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.200e-52 Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: Q3BAI1_PHAAO (Putative uncharacterized protein rps12 OS=Phalaenopsis aphrodite subsp. formosana GN=rps12 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 3.600e-51 Identity = 102/131 (77.86%), Postives = 107/131 (81.68%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24720.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24720.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo24720.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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