Spo24720.1 (mRNA)

Overview
NameSpo24720.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description(BnaC09g16480D protein) (BnaC09g26880D protein) (BnaC09g29120D protein) (BnaUnng00820D protein)
Locationchr4 : 55154106 .. 55155880 (+)
Sequence length582
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTTCGAGTCCGAGTCGCGGCATGGCATCTTACAAATTCTCAAAAAATTTCAATAGCCCTCTAACCTATAATGAAAATGAAATAAATTTTTGTGCTGATTTTCATTTCATAATTTGGAATTGAGGGATTTCTTTTTTTTTATATATATTTTATATGATATTTTCTACTTTAGAGCATATTTTAACTCATATTTCTTTTTCAACGGTTTCCGTTGTAATTACACTCCATTTGATAACTTTATTAGTCAATGAAATAGTGGGACTATATAATTCATTAGAAAAAGGCATGCTAGTTACTTTTTTCTGTATAACAGGATTATTAGTTACTCGTTGGGTTTATTGGAAGCATTTCCCATTAAGTGATCTATATGAATCATTAATCTTCCTTTCCTGGAGTTTCTACCTTATTCATATGATTCCATCTTTTTTAAAAAAAGAGAAAAATTCTTTAAATGTAATAACTGCACCAAGTGCTATTTTTACCCAAGGATTTGCTACATCGGGCCTATTAACTGAAATGCATCAATCCGGAATATTAGTACCCGCCCTACAATCACAGTGGTTAATGATGCATGTAAGTATGATGGTATTGGGTTATGCAGCTCTTTTAGGCGGATCATTATTATCTGTAACACTTCTAATTATTATATTTCAAAAAGATTTAATACAAGTTTTTGATAAACGAAAACATTTATTAAATGAGTCATTTTTCTTCGGTGAGATTCAATACATAAATGAAAAAAGCAATATAGTACAAAATGCTTCGCCCTCTTATGTTCGAAATTATTACAGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGTTATTAGTCTAGGATTTATCTTTTTAACCATAGGTATTCTTTCAGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCGTTTATTACTTGGACCATATTTGCAATTTATTTACATATTCGAACAAATAAAAATTTGCGGGGTGCAAATTCTGCAATTGTGGCTTTTATAGGCTTTCTTATAATTTGGATATGCTATTTTGGGGTTAATCTATTAGGAATAGGGCTACATAGTTATGGTTCATTTACATTAACGCTTAATTAAATGAAAGAAAGAGCCTTACTAATACAAATCTAATACAAATATAGCATCAAGTAATAAGCAAGTTTCTTATAAACAAGTGAGAACCATTTAAATCATGATTTAAATGGTTCTCACAACCGTCAAAAATGCCTGATTATAATTTCTTTTCTAATGACCCTGTTTTTCAGGGTAAGAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG

mRNA sequence

ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG

Coding sequence (CDS)

ATGGGCTATTATGATTTCAAAGAAGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGAGCATCTCGGTCCCAATTGATTGAACAACTGGATCATTGGAGTTATCGGGGGCAGTATGGGCCAATGAGGCATGGGGGTCATATTGGAACTGGGACCCAAAGGAAACTTGGGCAGCGCATATCCACGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGCTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG

Protein sequence

MGYYDFKEAAMVKLVDTLLLGSSARASRSQLIEQLDHWSYRGQYGPMRHGGHIGTGTQRKLGQRISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLFPNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24720Spo24720gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24720.1Spo24720.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24720.1.exon.1Spo24720.1.exon.1exon
Spo24720.1.exon.2Spo24720.1.exon.2exon
Spo24720.1.exon.3Spo24720.1.exon.3exon
Spo24720.1.exon.4Spo24720.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24720.1.CDS.1Spo24720.1.CDS.1CDS
Spo24720.1.CDS.2Spo24720.1.CDS.2CDS
Spo24720.1.CDS.3Spo24720.1.CDS.3CDS
Spo24720.1.CDS.4Spo24720.1.CDS.4CDS


Homology
BLAST of Spo24720.1 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 215.7 bits (548), Expect = 7.100e-53
Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF---PNFCRSTLRGN 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL     NFCRS     
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCRSI---- 68

Query: 125 EEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 184
                 G+ENPSL +LCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW
Sbjct: 69  ----PAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 128

Query: 185 YTRGASFPVLSY 194
           YTRGASFPVLSY
Sbjct: 129 YTRGASFPVLSY 132

BLAST of Spo24720.1 vs. NCBI nr
Match: gi|674871092|emb|CDY63594.1| (BnaUnng00820D [Brassica napus])

HSP 1 Score: 213.0 bits (541), Expect = 4.600e-52
Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF--PNFCRSTLRGNE 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL    NFC S      
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSI----- 68

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+ENP L +LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 69  ---PAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 128

Query: 185 TRGASFPVLSY 194
           TRGASFPVLSY
Sbjct: 129 TRGASFPVLSY 131

BLAST of Spo24720.1 vs. NCBI nr
Match: gi|78103323|ref|YP_358637.1| (hypothetical protein PhapfoPp091 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 209.5 bits (532), Expect = 5.100e-51
Identity = 102/131 (77.86%), Postives = 107/131 (81.68%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLFPN--FCRSTLRGNE 124
           I  I  CRNKVQ+  SVRMPQLHTSLHFHLTPIVMINGSSRRDL+  +  FCRS      
Sbjct: 9   IELIRSCRNKVQISRSVRMPQLHTSLHFHLTPIVMINGSSRRDLILDSQYFCRSI----- 68

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+ENP L +LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYR HDNWY
Sbjct: 69  ---PTGAENPPLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRRHDNWY 128

Query: 185 TRGASFPVLSY 194
           TRGASFPVLSY
Sbjct: 129 TRGASFPVLSY 131

BLAST of Spo24720.1 vs. NCBI nr
Match: gi|1000955455|ref|XP_015577855.1| (PREDICTED: uncharacterized protein LOC107261652 [Ricinus communis])

HSP 1 Score: 203.8 bits (517), Expect = 2.800e-49
Identity = 99/130 (76.15%), Postives = 104/130 (80.00%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF--PNFCRSTLRGNE 124
           I  IG CRNKVQV  SV MPQLHTSLHFHLTPI+MINGSSRRDL     NFC ST     
Sbjct: 18  IKLIGSCRNKVQVYRSVTMPQLHTSLHFHLTPIIMINGSSRRDLFLNSQNFCHST----- 77

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+EN SL +LCYRR WGS+NRRALILGWAYYLDAFSSYPL TWLPSVYRGHDNW+
Sbjct: 78  ---PAGAENSSLSRLCYRRFWGSQNRRALILGWAYYLDAFSSYPLSTWLPSVYRGHDNWH 137

Query: 185 TRGASFPVLS 193
           TRGASFPVLS
Sbjct: 138 TRGASFPVLS 139

BLAST of Spo24720.1 vs. NCBI nr
Match: gi|703133119|ref|XP_010105288.1| (hypothetical protein L484_000614 [Morus notabilis])

HSP 1 Score: 191.0 bits (484), Expect = 1.900e-45
Identity = 95/129 (73.64%), Postives = 100/129 (77.52%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQV--CGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF--PNFCRSTLRG 124
           I  IG CRNKVQV  C  VRMPQLHTSLHFHLTPIVMINGSSRRDLL    NF  ST   
Sbjct: 9   IELIGSCRNKVQVYRCIPVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFYHST--- 68

Query: 125 NEEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDN 184
                  G+ENPSL  LCYRRLWGSRN+RALILGWAY+LDAF+SYPL TWLPSVYRGHDN
Sbjct: 69  -----PAGAENPSLSWLCYRRLWGSRNKRALILGWAYFLDAFNSYPLHTWLPSVYRGHDN 128

Query: 185 WYTRGASFP 190
           WYTR  + P
Sbjct: 129 WYTRATALP 129

BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A075VX86_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf132a PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.000e-53
Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF---PNFCRSTLRGN 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL     NFCRS     
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCRSI---- 68

Query: 125 EEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 184
                 G+ENPSL +LCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW
Sbjct: 69  ----PAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 128

Query: 185 YTRGASFPVLSY 194
           YTRGASFPVLSY
Sbjct: 129 YTRGASFPVLSY 132

BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: M1D939_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.000e-53
Identity = 106/132 (80.30%), Postives = 109/132 (82.58%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF---PNFCRSTLRGN 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL     NFCRS     
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCRSI---- 68

Query: 125 EEKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 184
                 G+ENPSL +LCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW
Sbjct: 69  ----PAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 128

Query: 185 YTRGASFPVLSY 194
           YTRGASFPVLSY
Sbjct: 129 YTRGASFPVLSY 132

BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZTA1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.200e-52
Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF--PNFCRSTLRGNE 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL    NFC S      
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSI----- 68

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+ENP L +LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 69  ---PAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 128

Query: 185 TRGASFPVLSY 194
           TRGASFPVLSY
Sbjct: 129 TRGASFPVLSY 131

BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: A0A078G2W2_BRANA (BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.200e-52
Identity = 105/131 (80.15%), Postives = 107/131 (81.68%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLF--PNFCRSTLRGNE 124
           I  I  CRNKVQV  SVRMPQLHTSLHFHLTPIVMINGSSRRDLL    NFC S      
Sbjct: 9   IELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSI----- 68

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+ENP L +LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 69  ---PAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 128

Query: 185 TRGASFPVLSY 194
           TRGASFPVLSY
Sbjct: 129 TRGASFPVLSY 131

BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Match: Q3BAI1_PHAAO (Putative uncharacterized protein rps12 OS=Phalaenopsis aphrodite subsp. formosana GN=rps12 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.600e-51
Identity = 102/131 (77.86%), Postives = 107/131 (81.68%), Query Frame = 1

		  

Query: 65  ISTIGPCRNKVQVCGSVRMPQLHTSLHFHLTPIVMINGSSRRDLLFPN--FCRSTLRGNE 124
           I  I  CRNKVQ+  SVRMPQLHTSLHFHLTPIVMINGSSRRDL+  +  FCRS      
Sbjct: 9   IELIRSCRNKVQISRSVRMPQLHTSLHFHLTPIVMINGSSRRDLILDSQYFCRSI----- 68

Query: 125 EKPSLGSENPSLPQLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 184
                G+ENP L +LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYR HDNWY
Sbjct: 69  ---PTGAENPPLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRRHDNWY 128

Query: 185 TRGASFPVLSY 194
           TRGASFPVLSY
Sbjct: 129 TRGASFPVLSY 131

The following BLAST results are available for this feature:
BLAST of Spo24720.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|675895250|ref|YP_009049724.1|7.1e-5380.3hypothetical protein (mitochon... [more]
gi|674871092|emb|CDY63594.1|4.6e-5280.1BnaUnng00820D [Brassica napus][more]
gi|78103323|ref|YP_358637.1|5.1e-5177.8hypothetical protein PhapfoPp0... [more]
gi|1000955455|ref|XP_015577855.1|2.8e-4976.1PREDICTED: uncharacterized pro... [more]
gi|703133119|ref|XP_010105288.1|1.9e-4573.6hypothetical protein L484_0006... [more]
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BLAST of Spo24720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A075VX86_CAPAN5.0e-5380.3Uncharacterized protein OS=Cap... [more]
M1D939_SOLTU5.0e-5380.3Uncharacterized protein OS=Sol... [more]
A0A0D2ZTA1_BRAOL3.2e-5280.1Uncharacterized protein OS=Bra... [more]
A0A078G2W2_BRANA3.2e-5280.1BnaC09g16480D protein OS=Brass... [more]
Q3BAI1_PHAAO3.6e-5177.8Putative uncharacterized prote... [more]
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BLAST of Spo24720.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24720.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion