Spo24887.1 (mRNA)

Overview
NameSpo24887.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01189 : 64056 .. 64558 (-)
Sequence length373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTGGTGGTTGCGAATAAGTTATACTTGCAGCTTAGTCTCGAAGTGGGCGCGCTGTGACTTTTCTTTTCATCACTCTGGCTATCTGACTTTCTCCGCTCGCCCATTCACAATTTCACAGTCCCTCAAACCCTAGCATCCTCTCAATCTCTCTTTCTTCTTCAGATCTAACATGGCTAAGGTTGGAATTCCGCCATTTTCACCGTTGTTCGAAGGAATGTCGGCGTTATCATATGATATTGAGCGAATTTGGTGCCGATTCAAATTTGGTGCCGATTTACGCTCTCACCAAGAATTCAGAGTAGGAGAAGCAAAGCCACACGAGTTGAACCATGATTCTTCCAGTTTCTTGCATAGTAGGCAAGGTAATATCTCCCTTTTCGAATTTTTCATCGCCGTCTTTTTCTAGGGTTTTGTCTGCATTGGTTTGGGGTTTTTTCTAAATCCCTAATTTCTTCAACTTTTTGATTAATTTTGGTTGTTGAATGTGTTCAGGTAATTAA

mRNA sequence

TCTGTGGTGGTTGCGAATAAGTTATACTTGCAGCTTAGTCTCGAAGTGGGCGCGCTGTGACTTTTCTTTTCATCACTCTGGCTATCTGACTTTCTCCGCTCGCCCATTCACAATTTCACAGTCCCTCAAACCCTAGCATCCTCTCAATCTCTCTTTCTTCTTCAGATCTAACATGGCTAAGGTTGGAATTCCGCCATTTTCACCGTTGTTCGAAGGAATGTCGGCGTTATCATATGATATTGAGCGAATTTGGTGCCGATTCAAATTTGGTGCCGATTTACGCTCTCACCAAGAATTCAGAGTAGGAGAAGCAAAGCCACACGAGTTGAACCATGATTCTTCCAGTTTCTTGCATAGTAGGCAAGGTAATTAA

Coding sequence (CDS)

ATGGCTAAGGTTGGAATTCCGCCATTTTCACCGTTGTTCGAAGGAATGTCGGCGTTATCATATGATATTGAGCGAATTTGGTGCCGATTCAAATTTGGTGCCGATTTACGCTCTCACCAAGAATTCAGAGTAGGAGAAGCAAAGCCACACGAGTTGAACCATGATTCTTCCAGTTTCTTGCATAGTAGGCAAGGTAATTAA

Protein sequence

MAKVGIPPFSPLFEGMSALSYDIERIWCRFKFGADLRSHQEFRVGEAKPHELNHDSSSFLHSRQGN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24887Spo24887gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24887.1Spo24887.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24887.1.utr5p.1Spo24887.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24887.1.CDS.2Spo24887.1.CDS.2CDS
Spo24887.1.CDS.1Spo24887.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24887.1.exon.2Spo24887.1.exon.2exon
Spo24887.1.exon.1Spo24887.1.exon.1exon


Homology
[Close]
BLAST of Spo24887.1 vs. NCBI nr
Match: gi|902095358|gb|KNA03406.1| (hypothetical protein SOVF_209480 isoform B [Spinacia oleracea])

HSP 1 Score: 140.2 bits (352), Expect = 1.300e-30
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 

		  

Query: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFKFGADLRSHQEFRVGEAKPHELNHDSSSFL 60
          MAKVGIPPFSPLFEGMSALSYDIERIWCRF+FGADLRSHQEFRVGEAKPHELNHDSSSFL
Sbjct: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFEFGADLRSHQEFRVGEAKPHELNHDSSSFL 60

Query: 61 HSRQGN 67
          HSRQGN
Sbjct: 61 HSRQGN 66
[Close]
BLAST of Spo24887.1 vs. NCBI nr
Match: gi|902095357|gb|KNA03405.1| (hypothetical protein SOVF_209480 isoform A [Spinacia oleracea])

HSP 1 Score: 134.0 bits (336), Expect = 9.300e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFKFGADLRSHQEFRVGEAKPHELNHDSSSFL 60
          MAKVGIPPFSPLFEGMSALSYDIERIWCRF+FGADLRSHQEFRVGEAKPHELNHDSSSFL
Sbjct: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFEFGADLRSHQEFRVGEAKPHELNHDSSSFL 60

Query: 61 HSR 64
          HSR
Sbjct: 61 HSR 63
[Close]
BLAST of Spo24887.1 vs. NCBI nr
Match: gi|902189779|gb|KNA11463.1| (hypothetical protein SOVF_134710 isoform A [Spinacia oleracea])

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-6
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 1 

		  

Query: 16 MSALSYDIERIWCRFKFGADLRS--------HQEFRVGEAKPHELNHDSSSFLHSRQG 66
          MSALSYDIERI        D+           +  RVGEAKPHELNHDSSS LHSRQG
Sbjct: 1  MSALSYDIERISLPIYAXYDIERISLPIYAITKNSRVGEAKPHELNHDSSSLLHSRQG 58
[Close]
BLAST of Spo24887.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QA43_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_209480 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.100e-31
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 

		  

Query: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFKFGADLRSHQEFRVGEAKPHELNHDSSSFL 60
          MAKVGIPPFSPLFEGMSALSYDIERIWCRF+FGADLRSHQEFRVGEAKPHELNHDSSSFL
Sbjct: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFEFGADLRSHQEFRVGEAKPHELNHDSSSFL 60

Query: 61 HSRQGN 67
          HSRQGN
Sbjct: 61 HSRQGN 66
[Close]
BLAST of Spo24887.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q810_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_209480 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.500e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFKFGADLRSHQEFRVGEAKPHELNHDSSSFL 60
          MAKVGIPPFSPLFEGMSALSYDIERIWCRF+FGADLRSHQEFRVGEAKPHELNHDSSSFL
Sbjct: 1  MAKVGIPPFSPLFEGMSALSYDIERIWCRFEFGADLRSHQEFRVGEAKPHELNHDSSSFL 60

Query: 61 HSR 64
          HSR
Sbjct: 61 HSR 63
[Close]
BLAST of Spo24887.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXN5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134710 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.700e-6
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 1 

		  

Query: 16 MSALSYDIERIWCRFKFGADLRS--------HQEFRVGEAKPHELNHDSSSFLHSRQG 66
          MSALSYDIERI        D+           +  RVGEAKPHELNHDSSS LHSRQG
Sbjct: 1  MSALSYDIERISLPIYAXYDIERISLPIYAITKNSRVGEAKPHELNHDSSSLLHSRQG 58
The following BLAST results are available for this feature:
BLAST of Spo24887.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902095358|gb|KNA03406.1|1.3e-3098.4hypothetical protein SOVF_2094... [more]
gi|902095357|gb|KNA03405.1|9.3e-2998.4hypothetical protein SOVF_2094... [more]
gi|902189779|gb|KNA11463.1|3.8e-658.6hypothetical protein SOVF_1347... [more]
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BLAST of Spo24887.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QA43_SPIOL9.1e-3198.4Uncharacterized protein OS=Spi... [more]
A0A0K9Q810_SPIOL6.5e-2998.4Uncharacterized protein OS=Spi... [more]
A0A0K9QXN5_SPIOL2.7e-658.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24887.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24887.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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