Spo24988.1 (mRNA) | SpinachBase

Overview


Name	Spo24988.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding family protein
Location	Super_scaffold_70 : 520579 .. 525061 (-)
Sequence length	1949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGATTTCTTTTAGGTTACTTTTTTTTTTGGCTGGGTATGAACAAATACAATCGCTGGTAACCAGCGATGTAGCCCACTTCCAGGGAGTACTAGTAAAATAAACATAACAAAAAAATAATAAAAAAATAATAATCTCACTCATACGGTTATACGGCTCATATCTCCACTGAAACTACCGAGTCCTACAGGACGTCTTTTCCCTGTACCACTCCCCTTCCTTTCTCTCTCTTTCCTGCTCATCCCCCCTTTGAGCCAACCCTAGATCTTTGTCATTTCCCCAATTTTCTTGTTTTCTCTCTCCTCTTCAAATCTTTCAATGGCTATGGAAAACCGCTTAAACATGTCCCTCGACGATCTCATCAAGGTTAACAAAACCTCTACTGGCCGTGGCGGAGGCGGTGGCGGTAGAGGCAGACCTGGCGGCAGAGGTAATTCCGGTGCCGCACCTTCTCGAAGATTCACTAATCGCGTCTCCAATCGCTCCACTCCTTATACTATGCCCATGTCCAAGGTTTTCATCTTTCTTTGTCTCTCTCCTAGGGTTTTCGGGTTGTTTGCTGTTTAAATCTCACATTTTTTGAAATTTCCATTGAATTCCTTTGTGATTTTTGTTCAATTTTTCTCAGGCGCCTGATTCGTTTTGGCAGCATGATATGTTCGGGAATCAAGGTGGTGTTGGCGTTGGTGGAGGAGGAGGAGCGTCTTCAATTGAGACTGGAACGAAGCTTTACATCTCTAATTTGGATTACGGTGTTTCAAATGATGACATCAAGGTATTAAATTTTCCTTTTCTTAATCTTGTTTATGTTGATTCCGTGTTATGTTCTTTGAAACTCAGGGTTATCTGTTTTCCCATATACTGTTTAGAACTGTGAATTTGGAATATTAGGCAGTATTCTTTTTCTAGTTTAAAATCTAGGGTTAGCCTGGAAATGTGTTTGTAGCTCATTTTCTGGATCTAATTAAGTAGGCTATGAATTTTTTTGCTCTTCCTGCTAACTGTTTTCTTTCTGGGGCCAAAGAAGGTGTATACTTGAAGCTTTGGGTATTTTCTAGGTGCAAATCACTATTTTGAGTTCATGTGTTTTTTCAACAAATCCATCCGTTTGCCAGTGCTGTTGAGTGATTTGAATTGTTAGTAAAATGGGAGGGTGTTAATAAAATGATTTCAAAAAATGTAATTTAACACTGTTACTTTGTAGATGATTTTTTGCAATATATTCTAAGCTTGTACTCAATGTATTGGTACTCTCTTAATCCTGATATCTTGCAACATACCTGCTATACGAATATATCTAGGGACTTCATTTGTAAATGAAACTCATCGTTGTTGGGTAGGAAGAATTGATGTCGCAGGACATTTTTTTTCTGGTTGTTTGTATTTGCTCATGTAATAGCTTTTTTGGTTCAGTGATTTGTTAGATAGAAGAAATTGGTGACGCAATACCTAATGCTTTCTGAATAAACTACTACAGGAGCTCTTCTCAGAGGTTGGTGACCTGAAACGTTATGCTGTCCATTATGATAGGAGTGGAAGATCAAAGGTACTGGAGCTTTTTGTTTCTCCTCTTTTCCAGGAAATCTGTGCGGATCTATACAGTAGATGTTTAGACTGGGTTATGTTTATCAGGGAACTGCCGAAGTTGTTTTCTCACGGAGAGGAGATGGTCTGGCTGCTGTCAAGAGGTATAATAATGTAGAACTTGATGGTAAGCCAATGAAAATCGAGATTGTGGGGACGAATGTCGCAACCGCGGGAATATTGCCTCCAGTTCTTAACGGCATTGGCAGGAATCCACTTGGCCCAAGAAGGTATTCTTACACCTTGATACTCTGTTCCGTTTTTGGTATCTGTACATTAAAGAAAATCTCTATTTCTCTTGTCAAATTGTGCGCTTAATTGAATATGTATTTACAGCAGCGCATTGTCTTTTTCCTGTTGATCCATTTTGGTTGGGATTATTTGTGCCTCCTAGCTAGCTAGCATAGCAGAAGAATGATTTATTAGGCAAACTGTGAATCTTGGTGGTTTCAGTTTATAACTTCCAGGACTGAACTTTCAAGTTGTTTTATTGAGTGACTGATAGTTCTGTAAATGCTATTTTGCACTTGTCAGATTTAAACAGTACTGACTTAACATTCTAGTATCATGGAATTTTGTAAGAAGATTGAAGGGGACAAATTAGAGATTGCATATAACAGAACTGACTTAGAGCATAGACATTTCCAACTCAGTCTATGATCATTGAATACCAAGCTGTATGCATTTTGTGTTATTTGTGAGAGATGTAGTGTTTTACTGGCATCCTATTACTTCCCCAAATCTTGTTGAAAAGAGTTGTTAACCTTACAACCCCTCTCTCTCCCAAGCATCTCCAGACTTCGATAGGTATGCCATCGGGCCCCACTGCCCTCTTGCGTCCCATCTTTTTCAATGCCATCATCTTCCCTTTTTCCGTTTGAATTATATTTTTTCTGATTGGATAACATCAATTAAGAATTTGAATGGGAGTCTGTGTTTTCCATAGTGTGCTCCTAATAATTTCTTCTTTTTGATACTTTTAAAATATGCAGATTTACACTTAAATGAAAACCATTAGTTCATTTAGTTGCTAGGAAGTTCCATACGAGAAAACTTCACTTTACTGTAGGTCATGGTAGTAGTCGGTGATTTGCTCTAGTGTACTATGTTTGATTAGCATTTATGGAGGGAAAAAGAAGGGGAGGGGAAGAGTGAGTTTCCATTTTCCTTTCAAATCTCTTCCACCATGTGCGGATTTGATTTATTAATCCCCTCCCCCATGCCATATCTAAATAAGCGAAAATGCATCCCTCCATTTCATTTTCCTCCCTTTCTTTCCAAATCTTTCTAATCCAATGGTAGGGTTAGGGAATTGGCAGAGTATGTTAATCACAATCTTGTTGAATGACAGAACAAATTGATGATGCTGGGAAATGCAATAATACCAAATTGTCAACTTAGACCCTAATCATTCTTGCATGATCACCCTAAAAAATTTGCTTTCAATTTATAATCAAACTACTACTTAGAGAGATGATGTTGGATTTCTTGAAGATGCATTTTTGGTCATACATGCCTGCAATTGATATATCTTTCATAGCCTTTAGTATGTCTACAGAGATATGTCTTGTTGTAATAGTTTAATGCTTATACCAGATATGATCTGCTAGGAATTTTCTGGATCCTCCATGTCAACTCCCCGCTCCAGTGCTACTAGAGAACTTTTCTCATTAATTCAACTATATTTTGTTAATGTTTTTTTGCTGATCTGACAGTGTACAAGGAAGAGGTGGTGCTATGGGACGCATACGTGGAGGCCATGGTTTTGGCAGAGGTCGTGGCAGGGGAAGAGGGCGTGATGAAAAGGCATCTGTATCTGTAGATGACCTGGATGCCGACCTGGACAAGTACCACTCAGAAGCAATGCAGACAAACTAAAGCATCCTTATGGGTTTTCTTTTGCCTTCTCTTGGGTCTTAAACCTATGCTCTTGCAACTGTGTCCTTGATGATGGTTTCAACTGTGTTGTTTAATTCTATCAATTCTTATTTTTAGGCAAAGGCAGATAGAGGGCAGTAGTTGGATCTTGGTATCGAAGCTTGGGATTTGTATCGGACTTGATATGGTTGGGGGTTAGAATATCAGTTAATGAACAACTATGAGTGTTATTATTCAGATATAGATTGCTTTGTACTTTTGCTGTTTCATATATCTTGCAAACTGCAAAAAGAAGTGGGATATTTTTGGCAGTTCGAATACAATGTGGATACATACTCAAGATCATGGAAGTCCGAACTTTTCAATCAGAGTATCATTGTGCGGTTGACGGAGTTCTGGTTTTCTGATCTTTCCATTTTTAAGACCTTTGGCATGAGGTAGGTCCCTTGGTTTGTTTGGCTATTTTAATCTTTTGGTGCTTAAGCTAGTGTTAATGCTTCTATTTAATTGTTGGCCGTGATGTGATGGTGATGTCTTGTTGGGGAAATCAAATTCTTATTTTCCTGACTTGTTGGCATGGCAGTTAAAAGGGATCTTTTTCAGATCAAATACTAGATCTTCTCTGGAGGATTTTGATAATATGCGGTTTCTTTAGGATCCTGAAACCTGCTCCTGGGCTTTGATTGAGGCTACAGGAAAGTGAAGTTTGAAGAATCCACAAATCTTGTTTCTGCAGGGTCTTGTTGCTTAAAATATACAGATGGTGATAACTGCTAATCACTTTAAGATATGTAGTTTTGTTGATAATTAATAACTATATTATGATAGATGCACTCTTGTCCTTTAAACATACTTCGTATTCGACTGTTGGTGCTTATATTCTATTAAAATATTTTATTGGTATAAATCGTTCTTTTGATTTCTACACGAAAGAAGTGGGTTATATGGTTTCCAGTATCAGTTTTTGCACTTGTGAATTTTTTGAAAATAGGCCACAGCAGTCATGTTGGGAACCTCCCT

mRNA sequence

AAATGATTTCTTTTAGGTTACTTTTTTTTTTGGCTGGGTATGAACAAATACAATCGCTGGTAACCAGCGATGTAGCCCACTTCCAGGGAGTACTAGTAAAATAAACATAACAAAAAAATAATAAAAAAATAATAATCTCACTCATACGGTTATACGGCTCATATCTCCACTGAAACTACCGAGTCCTACAGGACGTCTTTTCCCTGTACCACTCCCCTTCCTTTCTCTCTCTTTCCTGCTCATCCCCCCTTTGAGCCAACCCTAGATCTTTGTCATTTCCCCAATTTTCTTGTTTTCTCTCTCCTCTTCAAATCTTTCAATGGCTATGGAAAACCGCTTAAACATGTCCCTCGACGATCTCATCAAGGTTAACAAAACCTCTACTGGCCGTGGCGGAGGCGGTGGCGGTAGAGGCAGACCTGGCGGCAGAGGTAATTCCGGTGCCGCACCTTCTCGAAGATTCACTAATCGCGTCTCCAATCGCTCCACTCCTTATACTATGCCCATGTCCAAGGCGCCTGATTCGTTTTGGCAGCATGATATGTTCGGGAATCAAGGTGGTGTTGGCGTTGGTGGAGGAGGAGGAGCGTCTTCAATTGAGACTGGAACGAAGCTTTACATCTCTAATTTGGATTACGGTGTTTCAAATGATGACATCAAGGAGCTCTTCTCAGAGGTTGGTGACCTGAAACGTTATGCTGTCCATTATGATAGGAGTGGAAGATCAAAGGGAACTGCCGAAGTTGTTTTCTCACGGAGAGGAGATGGTCTGGCTGCTGTCAAGAGGTATAATAATGTAGAACTTGATGGTAAGCCAATGAAAATCGAGATTGTGGGGACGAATGTCGCAACCGCGGGAATATTGCCTCCAGTTCTTAACGGCATTGGCAGGAATCCACTTGGCCCAAGAAGTGTACAAGGAAGAGGTGGTGCTATGGGACGCATACGTGGAGGCCATGGTTTTGGCAGAGGTCGTGGCAGGGGAAGAGGGCGTGATGAAAAGGCATCTGTATCTGTAGATGACCTGGATGCCGACCTGGACAAGTACCACTCAGAAGCAATGCAGACAAACTAAAGCATCCTTATGGGTTTTCTTTTGCCTTCTCTTGGGTCTTAAACCTATGCTCTTGCAACTGTGTCCTTGATGATGGTTTCAACTGTGTTGTTTAATTCTATCAATTCTTATTTTTAGGCAAAGGCAGATAGAGGGCAGTAGTTGGATCTTGGTATCGAAGCTTGGGATTTGTATCGGACTTGATATGGTTGGGGGTTAGAATATCAGTTAATGAACAACTATGAGTGTTATTATTCAGATATAGATTGCTTTGTACTTTTGCTGTTTCATATATCTTGCAAACTGCAAAAAGAAGTGGGATATTTTTGGCAGTTCGAATACAATGTGGATACATACTCAAGATCATGGAAGTCCGAACTTTTCAATCAGAGTATCATTGTGCGGTTGACGGAGTTCTGGTTTTCTGATCTTTCCATTTTTAAGACCTTTGGCATGAGTTAAAAGGGATCTTTTTCAGATCAAATACTAGATCTTCTCTGGAGGATTTTGATAATATGCGGTTTCTTTAGGATCCTGAAACCTGCTCCTGGGCTTTGATTGAGGCTACAGGAAAGTGAAGTTTGAAGAATCCACAAATCTTGTTTCTGCAGGGTCTTGTTGCTTAAAATATACAGATGGTGATAACTGCTAATCACTTTAAGATATGTAGTTTTGTTGATAATTAATAACTATATTATGATAGATGCACTCTTGTCCTTTAAACATACTTCGTATTCGACTGTTGGTGCTTATATTCTATTAAAATATTTTATTGGTATAAATCGTTCTTTTGATTTCTACACGAAAGAAGTGGGTTATATGGTTTCCAGTATCAGTTTTTGCACTTGTGAATTTTTTGAAAATAGGCCACAGCAGTCATGTTGGGAACCTCCCT

Coding sequence (CDS)

ATGGCTATGGAAAACCGCTTAAACATGTCCCTCGACGATCTCATCAAGGTTAACAAAACCTCTACTGGCCGTGGCGGAGGCGGTGGCGGTAGAGGCAGACCTGGCGGCAGAGGTAATTCCGGTGCCGCACCTTCTCGAAGATTCACTAATCGCGTCTCCAATCGCTCCACTCCTTATACTATGCCCATGTCCAAGGCGCCTGATTCGTTTTGGCAGCATGATATGTTCGGGAATCAAGGTGGTGTTGGCGTTGGTGGAGGAGGAGGAGCGTCTTCAATTGAGACTGGAACGAAGCTTTACATCTCTAATTTGGATTACGGTGTTTCAAATGATGACATCAAGGAGCTCTTCTCAGAGGTTGGTGACCTGAAACGTTATGCTGTCCATTATGATAGGAGTGGAAGATCAAAGGGAACTGCCGAAGTTGTTTTCTCACGGAGAGGAGATGGTCTGGCTGCTGTCAAGAGGTATAATAATGTAGAACTTGATGGTAAGCCAATGAAAATCGAGATTGTGGGGACGAATGTCGCAACCGCGGGAATATTGCCTCCAGTTCTTAACGGCATTGGCAGGAATCCACTTGGCCCAAGAAGTGTACAAGGAAGAGGTGGTGCTATGGGACGCATACGTGGAGGCCATGGTTTTGGCAGAGGTCGTGGCAGGGGAAGAGGGCGTGATGAAAAGGCATCTGTATCTGTAGATGACCTGGATGCCGACCTGGACAAGTACCACTCAGAAGCAATGCAGACAAACTAA

Protein sequence

MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADLDKYHSEAMQTN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24988	Spo24988	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24988.1	Spo24988.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24988.1.utr5p.1	Spo24988.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24988.1.CDS.5	Spo24988.1.CDS.5	CDS
Spo24988.1.CDS.4	Spo24988.1.CDS.4	CDS
Spo24988.1.CDS.3	Spo24988.1.CDS.3	CDS
Spo24988.1.CDS.2	Spo24988.1.CDS.2	CDS
Spo24988.1.CDS.1	Spo24988.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24988.1.utr3p.2	Spo24988.1.utr3p.2	three_prime_UTR
Spo24988.1.utr3p.1	Spo24988.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24988.1.exon.6	Spo24988.1.exon.6	exon
Spo24988.1.exon.5	Spo24988.1.exon.5	exon
Spo24988.1.exon.4	Spo24988.1.exon.4	exon
Spo24988.1.exon.3	Spo24988.1.exon.3	exon
Spo24988.1.exon.2	Spo24988.1.exon.2	exon
Spo24988.1.exon.1	Spo24988.1.exon.1	exon

Homology

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BLAST of Spo24988.1 vs. NCBI nr
Match: gi|902115363|gb|KNA03876.1| (hypothetical protein SOVF_204980 [Spinacia oleracea])

HSP 1 Score: 485.3 bits (1248), Expect = 6.300e-134
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 1


		  
Query: 1   MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT 60
           MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT
Sbjct: 1   MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT 60

Query: 61  MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV 120
           MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV
Sbjct: 61  MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV 120

Query: 121 GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG 180
           GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG
Sbjct: 121 GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG 180

Query: 181 ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADL 240
           ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGG GFGRGRGRGRGRDEKASVSVDDLDADL
Sbjct: 181 ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGRGFGRGRGRGRGRDEKASVSVDDLDADL 240

Query: 241 DKYHSEAMQTN 252
           DKYHSEAMQTN
Sbjct: 241 DKYHSEAMQTN 251

[Close]

BLAST of Spo24988.1 vs. NCBI nr
Match: gi|731349080|ref|XP_010685814.1| (PREDICTED: THO complex subunit 4B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 403.3 bits (1035), Expect = 3.100e-109
Identity = 214/249 (85.94%), Postives = 224/249 (89.96%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           MENRLNMSLDDLIK+NK++  RGGGGGG GR  GRG SG APSRRF NR  NRSTPY+MP
Sbjct: 1   MENRLNMSLDDLIKINKSTPSRGGGGGGGGR--GRGRSGPAPSRRFANRAVNRSTPYSMP 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 122
           MSKAPD+FWQHDMFGNQGG G GG G ASSIETGTKLYISNLDYGVSNDDIKELFSEVGD
Sbjct: 61  MSKAPDTFWQHDMFGNQGGGGAGGVG-ASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 120

Query: 123 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGIL 182
           LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTN+A AG+L
Sbjct: 121 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNMAAAGML 180

Query: 183 PPVLNGIGRNPLGPRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADLDK 242
           PP  NGIGRNPLGPRS QGRGGAMGR RGG G  RGRGRGRGR++K  VS DDLDADL+K
Sbjct: 181 PPAANGIGRNPLGPRSGQGRGGAMGRPRGGRGTARGRGRGRGREDKV-VSADDLDADLEK 240

Query: 243 YHSEAMQTN 252
           YHSEAMQTN
Sbjct: 241 YHSEAMQTN 245

[Close]

BLAST of Spo24988.1 vs. NCBI nr
Match: gi|225435024|ref|XP_002284215.1| (PREDICTED: THO complex subunit 4A [Vitis vinifera])

HSP 1 Score: 303.9 bits (777), Expect = 2.600e-79
Identity = 177/253 (69.96%), Postives = 197/253 (77.87%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           M N L+MSLDDLIK NK S   GGGG  RGR  GRG SG  P+RR  NR +NR TPY++ 
Sbjct: 1   MSNALDMSLDDLIKNNKRS---GGGGNARGR--GRG-SGPGPARRLPNRGANRITPYSV- 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 122
            SKAP++ WQHDMF +Q        G  S+IETGTKLYISNLDYGVSN+DIKELFSEVGD
Sbjct: 61  -SKAPETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGD 120

Query: 123 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGIL 182
           LKRY++HYDRSGRSKGTAEVVFSRRGD +AAVKRYNNV+LDGKPMKIEIVGTN+AT   +
Sbjct: 121 LKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAV 180

Query: 183 PPVLNG-IGRNPLGPRSVQGRGGAMGRIR---GGHGFGRGRGRGRGRDEKASVSVDDLDA 242
           PPV NG  G +  G RS QGR G+ GR R   GG GFGRGRGRGRGR EK  VS +DLDA
Sbjct: 181 PPVTNGTFGNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEK--VSAEDLDA 240

Query: 243 DLDKYHSEAMQTN 252
           DL+KYHSEAMQ N
Sbjct: 241 DLEKYHSEAMQIN 243

[Close]

BLAST of Spo24988.1 vs. NCBI nr
Match: gi|255581121|ref|XP_002531375.1| (PREDICTED: THO complex subunit 4A [Ricinus communis])

HSP 1 Score: 297.0 bits (759), Expect = 3.200e-77
Identity = 173/258 (67.05%), Postives = 195/258 (75.58%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           M + L+MSLDD+IK NK    + G G  RGR  GR +SG  P+RRF NR +NR+ PY   
Sbjct: 1   MSSALDMSLDDIIKSNK----KPGSGNSRGR--GR-SSGPGPTRRFNNRGTNRAAPYAA- 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGV-----GGGGGASSIETGTKLYISNLDYGVSNDDIKELF 122
            +KAP+S WQHDMF +QGG+G+     GGG  AS IETGTKLYISNL+YGVSN+DIKELF
Sbjct: 61  -AKAPESTWQHDMFTDQGGMGMFQGQGGGGSRASGIETGTKLYISNLEYGVSNEDIKELF 120

Query: 123 SEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVA 182
           SEVGDLKRY++HYDRSGRSKGTAEVVFSRR D LAAVKRYNNV+LDGKPMKIEIVGTN+A
Sbjct: 121 SEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIA 180

Query: 183 TAGILPPVLNGIGRNPLGPRSVQGRGGAMGRIRG----GHGFGRGRGRGRGRDEKASVSV 242
           T    P      G +   PR  QGRGG M R RG    G GFGRGRGRGRGR EK  VS 
Sbjct: 181 TPAATPAANGNFGNSNGAPRGGQGRGGTMRRPRGASSDGRGFGRGRGRGRGRGEK--VSA 240

Query: 243 DDLDADLDKYHSEAMQTN 252
           +DLDADL+KYHSEAMQTN
Sbjct: 241 EDLDADLEKYHSEAMQTN 247

[Close]

BLAST of Spo24988.1 vs. NCBI nr
Match: gi|720013236|ref|XP_010260105.1| (PREDICTED: THO complex subunit 4A [Nelumbo nucifera])

HSP 1 Score: 295.0 bits (754), Expect = 1.200e-76
Identity = 172/251 (68.53%), Postives = 190/251 (75.70%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPY-TM 62
           M + L+M+L+DLIK NK S    GGG  RGR  GRG SG  PSRRF NR +NR+ PY T 
Sbjct: 1   MSSALDMTLEDLIKNNKKS----GGGNFRGR--GRG-SGPGPSRRFPNRGANRTAPYSTG 60

Query: 63  PMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVG 122
              +APDS WQHDMF +Q           S+IETGTKLYISNL+YGVSN+DIKELFSEVG
Sbjct: 61  KPVQAPDSAWQHDMFTDQAAAYPAQAARTSAIETGTKLYISNLEYGVSNEDIKELFSEVG 120

Query: 123 DLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGI 182
           DLKRY VHYDRSGRSKGTAEVVFSRR D LAAVKRYNNV+LDGKPMKIE+VGTN+AT   
Sbjct: 121 DLKRYTVHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEVVGTNIATPVA 180

Query: 183 LPPVLNGIGRNPLG-PRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADL 242
           +PP  NG   NP G PRS QGRGGAMGR RGG G G GRGRGR RD    +S +DLDADL
Sbjct: 181 VPPAANGGFGNPNGVPRSGQGRGGAMGRSRGGGGRGFGRGRGRRRDRGEQISAEDLDADL 240

Query: 243 DKYHSEAMQTN 252
           +KYHSEAMQ N
Sbjct: 241 EKYHSEAMQIN 244

[Close]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBG3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_204980 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 4.400e-134
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 1


		  
Query: 1   MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT 60
           MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT
Sbjct: 1   MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT 60

Query: 61  MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV 120
           MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV
Sbjct: 61  MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV 120

Query: 121 GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG 180
           GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG
Sbjct: 121 GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG 180

Query: 181 ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADL 240
           ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGG GFGRGRGRGRGRDEKASVSVDDLDADL
Sbjct: 181 ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGRGFGRGRGRGRGRDEKASVSVDDLDADL 240

Query: 241 DKYHSEAMQTN 252
           DKYHSEAMQTN
Sbjct: 241 DKYHSEAMQTN 251

[Close]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EQK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174340 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.200e-109
Identity = 214/249 (85.94%), Postives = 224/249 (89.96%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           MENRLNMSLDDLIK+NK++  RGGGGGG GR  GRG SG APSRRF NR  NRSTPY+MP
Sbjct: 1   MENRLNMSLDDLIKINKSTPSRGGGGGGGGR--GRGRSGPAPSRRFANRAVNRSTPYSMP 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 122
           MSKAPD+FWQHDMFGNQGG G GG G ASSIETGTKLYISNLDYGVSNDDIKELFSEVGD
Sbjct: 61  MSKAPDTFWQHDMFGNQGGGGAGGVG-ASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 120

Query: 123 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGIL 182
           LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTN+A AG+L
Sbjct: 121 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNMAAAGML 180

Query: 183 PPVLNGIGRNPLGPRSVQGRGGAMGRIRGGHGFGRGRGRGRGRDEKASVSVDDLDADLDK 242
           PP  NGIGRNPLGPRS QGRGGAMGR RGG G  RGRGRGRGR++K  VS DDLDADL+K
Sbjct: 181 PPAANGIGRNPLGPRSGQGRGGAMGRPRGGRGTARGRGRGRGREDKV-VSADDLDADLEK 240

Query: 243 YHSEAMQTN 252
           YHSEAMQTN
Sbjct: 241 YHSEAMQTN 245

[Close]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Match: D7SKJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04340 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.800e-79
Identity = 177/253 (69.96%), Postives = 197/253 (77.87%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           M N L+MSLDDLIK NK S   GGGG  RGR  GRG SG  P+RR  NR +NR TPY++ 
Sbjct: 1   MSNALDMSLDDLIKNNKRS---GGGGNARGR--GRG-SGPGPARRLPNRGANRITPYSV- 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVGD 122
            SKAP++ WQHDMF +Q        G  S+IETGTKLYISNLDYGVSN+DIKELFSEVGD
Sbjct: 61  -SKAPETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGD 120

Query: 123 LKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGIL 182
           LKRY++HYDRSGRSKGTAEVVFSRRGD +AAVKRYNNV+LDGKPMKIEIVGTN+AT   +
Sbjct: 121 LKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAV 180

Query: 183 PPVLNG-IGRNPLGPRSVQGRGGAMGRIR---GGHGFGRGRGRGRGRDEKASVSVDDLDA 242
           PPV NG  G +  G RS QGR G+ GR R   GG GFGRGRGRGRGR EK  VS +DLDA
Sbjct: 181 PPVTNGTFGNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEK--VSAEDLDA 240

Query: 243 DLDKYHSEAMQTN 252
           DL+KYHSEAMQ N
Sbjct: 241 DLEKYHSEAMQIN 243

[Close]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Match: B9SZF6_RICCO (RNA and export factor binding protein, putative OS=Ricinus communis GN=RCOM_0983290 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.200e-77
Identity = 173/258 (67.05%), Postives = 195/258 (75.58%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTMP 62
           M + L+MSLDD+IK NK    + G G  RGR  GR +SG  P+RRF NR +NR+ PY   
Sbjct: 1   MSSALDMSLDDIIKSNK----KPGSGNSRGR--GR-SSGPGPTRRFNNRGTNRAAPYAA- 60

Query: 63  MSKAPDSFWQHDMFGNQGGVGV-----GGGGGASSIETGTKLYISNLDYGVSNDDIKELF 122
            +KAP+S WQHDMF +QGG+G+     GGG  AS IETGTKLYISNL+YGVSN+DIKELF
Sbjct: 61  -AKAPESTWQHDMFTDQGGMGMFQGQGGGGSRASGIETGTKLYISNLEYGVSNEDIKELF 120

Query: 123 SEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVA 182
           SEVGDLKRY++HYDRSGRSKGTAEVVFSRR D LAAVKRYNNV+LDGKPMKIEIVGTN+A
Sbjct: 121 SEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIA 180

Query: 183 TAGILPPVLNGIGRNPLGPRSVQGRGGAMGRIRG----GHGFGRGRGRGRGRDEKASVSV 242
           T    P      G +   PR  QGRGG M R RG    G GFGRGRGRGRGR EK  VS 
Sbjct: 181 TPAATPAANGNFGNSNGAPRGGQGRGGTMRRPRGASSDGRGFGRGRGRGRGRGEK--VSA 240

Query: 243 DDLDADLDKYHSEAMQTN 252
           +DLDADL+KYHSEAMQTN
Sbjct: 241 EDLDADLEKYHSEAMQTN 247

[Close]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Match: A0A059D538_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02389 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.000e-74
Identity = 173/256 (67.58%), Postives = 193/256 (75.39%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTS-TGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYTM 62
           M + L+MSLDD+IK NK S +G    GGGRGR GG   SG  P+RR  NR + R+ PY  
Sbjct: 1   MSSALDMSLDDIIKSNKKSGSGAPRSGGGRGRGGGGAASGPGPTRRPPNRAAARANPYAA 60

Query: 63  PMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVG 122
           P  KAP++ WQHDMF +QG    G  G AS+IETGTKLYISNLDYGVSN+DIKELFSEVG
Sbjct: 61  P--KAPETTWQHDMFADQGLTFQGQPGRASAIETGTKLYISNLDYGVSNEDIKELFSEVG 120

Query: 123 DLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGI 182
           DLKR+AVHYDRSGRSKGTAEVVFSRR D LAAVKRYNNV+LDGKPMKIEIVGTN+AT   
Sbjct: 121 DLKRHAVHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAA 180

Query: 183 LPPVLNGIGRNPLG-PRSVQGRGGAMGRIRGG-HGFG-----RGRGRGRGRDEKASVSVD 242
            P + NG   N  G PR  Q RGGA+GR RGG  G G     RGRGRGRGR EK  VS +
Sbjct: 181 TPVISNGSFGNLNGFPRGGQARGGAIGRPRGGASGSGRRPAARGRGRGRGRSEK--VSAE 240

Query: 243 DLDADLDKYHSEAMQT 251
           DLDADL+KYHSEAM+T
Sbjct: 241 DLDADLEKYHSEAMET 252

[Close]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.900e-66
Identity = 169/295 (57.29%), Postives = 193/295 (65.42%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTG-RGGGG-GGRGRPGGRGNSGA--APSRRFTNRVSNRSTP 62
           M   L+MSLDD+IK N+  TG RG GG GG    GGRG SG+   PSRRF NRV  R+ P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 63  YTMPMSK--APDSFWQHDMFGNQGGVGVGGG-------GGASSIETGTKLYISNLDYGVS 122
           Y+ P+ +  A D+ WQ+D+F     V    G       GG SSIETGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 123 NDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKI 182
           N+DIKELFSEVGDLKRY +HYDRSGRSKGTAEVVFSRRGD LAAVKRYNNV+LDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 183 EIVGTNVATAGI-------LPPVLNGI------------GRNPLGPRSVQGRGGAMGRIR 242
           EIVGTN++   +       +P   NGI              N  G    +GRGG MGR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 243 GGHGFG----------RGRG----RGRGRDEKASVSVDDLDADLDKYHSEAMQTN 252
           GG GFG          RGRG     GRGRDE  +VS +DLDA+LDKYH EAM+T+
Sbjct: 241 GG-GFGGGNFRGGRGARGRGGRGSGGRGRDE--NVSAEDLDAELDKYHKEAMETS 292

[Close]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.900e-58
Identity = 149/254 (58.66%), Postives = 171/254 (67.32%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFT-NRVSNRSTPYTM 62
           M   L+MSLDD+I  N+ S  RGG G  RG   G   SG  P+RR   NR S RS PY  
Sbjct: 1   MSTGLDMSLDDMIAKNRKS--RGGAGPARGTGSG---SGPGPTRRNNPNRKSTRSAPYQS 60

Query: 63  PMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVG 122
             +KAP+S W HDMF ++      G   A  IETGTKLYISNLDYGV N+DIKELF+EVG
Sbjct: 61  --AKAPESTWGHDMFSDRSEDHRSGRSSAG-IETGTKLYISNLDYGVMNEDIKELFAEVG 120

Query: 123 DLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGI 182
           +LKRY VH+DRSGRSKGTAEVV+SRRGD LAAVK+YN+V+LDGKPMKIEIVGTN+ TA  
Sbjct: 121 ELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAA- 180

Query: 183 LPPVLNGIGRNPLGP-RSVQGRGGAM---GRIRGGHGFGRGRGRGRGRDEKASVSVDDLD 242
            P      G +   P R  QGRGG     GR  GG G G GRGR  G+     +S +DLD
Sbjct: 181 APSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLD 240

Query: 243 ADLDKYHSEAMQTN 252
           ADLDKYHS  M+TN
Sbjct: 241 ADLDKYHSGDMETN 244

[Close]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.300e-43
Identity = 122/268 (45.52%), Postives = 159/268 (59.33%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRG------------NSGAAPSRRFTN 62
           M ++++MSLDD+IK+N++  G  GGG GRGR G +G            N G  P R   N
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIR---N 60

Query: 63  RVS-----------NRSTPYTMPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKL 122
           R +           NR  PY+ P  + PD  WQHD+F +    G GGG G   +ETG KL
Sbjct: 61  RPAIARGAAGGGGRNRPAPYSRP-KQLPDK-WQHDLFDS----GFGGGAG---VETGGKL 120

Query: 123 YISNLDYGVSNDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNN 182
            +SNLD+GVS+ DI+ELF+E G LK+ AVHYDRSGRS GTA+V F R+ D L A+K+YN 
Sbjct: 121 LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 180

Query: 183 VELDGKPMKIEIVGTNVATAGILPPVLN--GIGRNPLGPRSVQGRGGAMGRIRGGHGFGR 242
           V LDG+PM I++V + + T       +N  G+ RN    R   G GG  G  RG  G  R
Sbjct: 181 VPLDGRPMNIQLVTSQIDTQRRPAQSVNRGGMTRN----RGSGGFGGGGGTRRGTRGGSR 240

Query: 243 GRGRGRGRDEKASVSVDDLDADLDKYHS 246
           GRGRG GR  K  +S ++LDA LD Y++
Sbjct: 241 GRGRGTGRSSKQQLSAEELDAQLDAYNA 252

[Close]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3)

HSP 1 Score: 177.2 bits (448), Expect = 2.300e-43
Identity = 121/268 (45.15%), Postives = 159/268 (59.33%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRG------------NSGAAPSRRFTN 62
           M ++++MSLDD+IK+N++  G  GGG GRGR G +G            N G  P R   N
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIR---N 60

Query: 63  RVS-----------NRSTPYTMPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKL 122
           R +           NR  PY+ P  + PD  WQHD+F +    G GGG G   +ETG KL
Sbjct: 61  RPAIARGAAGGGGRNRPAPYSRP-KQLPDK-WQHDLFDS----GFGGGAG---VETGGKL 120

Query: 123 YISNLDYGVSNDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNN 182
            +SNLD+GVS+ DI+ELF+E G LK+ AVHYDRSGRS GTA+V F R+ D L A+K+YN 
Sbjct: 121 LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 180

Query: 183 VELDGKPMKIEIVGTNVATAGILPPVLN--GIGRNPLGPRSVQGRGGAMGRIRGGHGFGR 242
           V LDG+PM I++V + +         +N  G+ RN    R   G GG  G  RG  G  R
Sbjct: 181 VPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRN----RGAGGFGGGGGTRRGTRGGAR 240

Query: 243 GRGRGRGRDEKASVSVDDLDADLDKYHS 246
           GRGRG GR+ K  +S ++LDA LD Y++
Sbjct: 241 GRGRGAGRNSKQQLSAEELDAQLDAYNA 252

[Close]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3)

HSP 1 Score: 175.6 bits (444), Expect = 6.600e-43
Identity = 122/267 (45.69%), Postives = 160/267 (59.93%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRG------------NSGAAPSRRFTN 62
           M ++++MSLDD+IK+N++  G  GGG GRGR G +G            N G  P R   N
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMR---N 60

Query: 63  RVS----------NRSTPYTMPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLY 122
           R +          NR  PY+ P  + PD  WQHD+F +    G GGG G   +ETG KL 
Sbjct: 61  RPAIARGAAGGGRNRPAPYSRP-KQLPDK-WQHDLFDS----GFGGGAG---VETGGKLL 120

Query: 123 ISNLDYGVSNDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNV 182
           +SNLD+GVS+ DI+ELF+E G LK+ AVHYDRSGRS GTA+V F R+ D L A+K+YN V
Sbjct: 121 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 180

Query: 183 ELDGKPMKIEIVGTNVATAGILPPVLN--GIGRNPLGPRSVQGRGGAMGRIRGGHGFGRG 242
            LDG+PM I++V + + T       +N  G+ RN    R   G GG  G  RG  G  RG
Sbjct: 181 PLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTRN----RGSGGFGGG-GTRRGTRGGSRG 240

Query: 243 RGRGRGRDEKASVSVDDLDADLDKYHS 246
           RGRG GR+ K  +S ++LDA LD Y++
Sbjct: 241 RGRGTGRNSKQQLSAEELDAQLDAYNA 250

[Close]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 253.8 bits (647), Expect = 1.100e-67
Identity = 169/295 (57.29%), Postives = 193/295 (65.42%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTG-RGGGG-GGRGRPGGRGNSGA--APSRRFTNRVSNRSTP 62
           M   L+MSLDD+IK N+  TG RG GG GG    GGRG SG+   PSRRF NRV  R+ P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 63  YTMPMSK--APDSFWQHDMFGNQGGVGVGGG-------GGASSIETGTKLYISNLDYGVS 122
           Y+ P+ +  A D+ WQ+D+F     V    G       GG SSIETGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 123 NDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKI 182
           N+DIKELFSEVGDLKRY +HYDRSGRSKGTAEVVFSRRGD LAAVKRYNNV+LDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 183 EIVGTNVATAGI-------LPPVLNGI------------GRNPLGPRSVQGRGGAMGRIR 242
           EIVGTN++   +       +P   NGI              N  G    +GRGG MGR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 243 GGHGFG----------RGRG----RGRGRDEKASVSVDDLDADLDKYHSEAMQTN 252
           GG GFG          RGRG     GRGRDE  +VS +DLDA+LDKYH EAM+T+
Sbjct: 241 GG-GFGGGNFRGGRGARGRGGRGSGGRGRDE--NVSAEDLDAELDKYHKEAMETS 292

[Close]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.6 bits (579), Expect = 8.300e-60
Identity = 148/254 (58.27%), Postives = 169/254 (66.54%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFT-NRVSNRSTPYTM 62
           M   L+MSLDD+I  N+ S  RGG G  RG   G   SG  P+RR   NR S RS PY  
Sbjct: 1   MSTGLDMSLDDMIAKNRKS--RGGAGPARGTGSG---SGPGPTRRNNPNRKSTRSAPYQS 60

Query: 63  PMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEVG 122
             +KAP+S W HDMF ++      G   A  IETGTKLYISNLDYGV N+DIKELF+EVG
Sbjct: 61  --AKAPESTWGHDMFSDRSEDHRSGRSSAG-IETGTKLYISNLDYGVMNEDIKELFAEVG 120

Query: 123 DLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAGI 182
           +LKRY VH+DRSGRSKGTAEVV+SRRGD LAAVK+YN+V+LDGKPMKIEIVGTN+ TA  
Sbjct: 121 ELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA 180

Query: 183 -LPPVLNGIGRNPLGPRSVQGRGGAM---GRIRGGHGFGRGRGRGRGRDEKASVSVDDLD 242
                 NG        R  QGRGG     GR  GG G G GRGR  G+     +S +DLD
Sbjct: 181 PSGRPANGNSNGAPWSRGGQGRGGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLD 240

Query: 243 ADLDKYHSEAMQTN 252
           ADLDKYHS  M+TN
Sbjct: 241 ADLDKYHSGDMETN 245

[Close]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Match: AT5G37720.1 (ALWAYS EARLY 4)

HSP 1 Score: 171.0 bits (432), Expect = 9.200e-43
Identity = 117/295 (39.66%), Postives = 165/295 (55.93%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKTSTGRGGGGG---GRGRPGGRGNSGAAPSRRFTNRVSNRSTPY 62
           M   LNM+LD+++K  KT+  R GG G   GRGR  G G  GA P+RR    V+ R + +
Sbjct: 1   MSGALNMTLDEIVKRGKTA--RSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSF 60

Query: 63  TM--PMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELF 122
           T+  P+ +     WQ  +F  + G+   G   AS +E GT+L+++NLD GV+N+DI+ELF
Sbjct: 61  TINKPVRRVRSLPWQSGLF--EDGLRAAG---ASGVEVGTRLHVTNLDQGVTNEDIRELF 120

Query: 123 SEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVA 182
           SE+G+++RYA+HYD++GR  GTAEVV+ RR D   A+K+YNNV LDG+PM++EI+G N +
Sbjct: 121 SEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNS 180

Query: 183 TAGILPPVLN----GIGRNPLGPRSVQGRGGAMGRIRGGHG------------------- 242
           +   L   +N    G+         +Q  GG  GR+RGG G                   
Sbjct: 181 SEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQG 240

Query: 243 -----------------FGRGRGRGRGRDEK-ASVSVDDLDADLDKYHSEAMQTN 252
                             GRGRG GRG  +K    S  DLD DL+ YH++AM T+
Sbjct: 241 GGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMNTS 288

[Close]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.4 bits (381), Expect = 7.600e-37
Identity = 117/298 (39.26%), Postives = 166/298 (55.70%), Query Frame = 1


		  
Query: 3   MENRLNMSLDDLIKVNKT---STGRGGGGG-------GRGRPGG--RGNSGAAPSRRFTN 62
           M + LNM+LD+++K +K+   +  R GG G       GRG P G   G  G  P RR   
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 63  RVSNR-STPYTM-PMSKAPDSF-WQH--DMFGNQ-GGVGVGGGGGASSIETGTKLYISNL 122
            V+ R S+ +++  +++   S  WQ+  D++      VGV G      +E GT +YI+NL
Sbjct: 61  AVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSG------VEVGTTVYITNL 120

Query: 123 DYGVSNDDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDG 182
           D GV+N+DI+EL++E+G+LKRYA+HYD++GR  G+AEVV+ RR D + A+++YNNV LDG
Sbjct: 121 DQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDG 180

Query: 183 KPMKIEIVGTNVATAGILPPV----LNG-------IGRNPLGPRSVQGRGGA-------- 242
           +PMK+EI+G N  +A +   V    LNG       IG+   G R  +GRG          
Sbjct: 181 RPMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRRLPL 240

Query: 243 ----MGRIRGGHGFGRGRGR-----------GRGRDEKASVSVDDLDADLDKYHSEAM 249
                G +  G G  RGRGR           GRG  +    S  DLD DL+ YH+EAM
Sbjct: 241 QQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-10
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = 1


		  
Query: 62  PMSKAPDSFWQ--HDMFGNQG-GVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFS 121
           P  K  D F +     FG+ G G G GGG GA S   G ++Y+ NL +GV +  ++ LFS
Sbjct: 169 PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS---GNRVYVGNLSWGVDDMALESLFS 228

Query: 122 EVGDLKRYAVHYDR-SGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKI 170
           E G +    V YDR SGRSKG   V +    +   A+K  +  +LDG+ +++
Sbjct: 229 EQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277

The following BLAST results are available for this feature:

BLAST of Spo24988.1 vs. NCBI nr
BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
BLAST of Spo24988.1 vs. TAIR (Arabidopsis)

BLAST of Spo24988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902115363\|gb\|KNA03876.1\|	6.3e-134	99.6	hypothetical protein SOVF_2049...	[more]
gi\|731349080\|ref\|XP_010685814.1\|	3.1e-109	85.9	PREDICTED: THO complex subunit...	[more]
gi\|225435024\|ref\|XP_002284215.1\|	2.6e-79	69.9	PREDICTED: THO complex subunit...	[more]
gi\|255581121\|ref\|XP_002531375.1\|	3.2e-77	67.0	PREDICTED: THO complex subunit...	[more]
gi\|720013236\|ref\|XP_010260105.1\|	1.2e-76	68.5	PREDICTED: THO complex subunit...	[more]

BLAST of Spo24988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QBG3_SPIOL	4.4e-134	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8EQK2_BETVU	2.2e-109	85.9	Uncharacterized protein OS=Bet...	[more]
D7SKJ4_VITVI	1.8e-79	69.9	Putative uncharacterized prote...	[more]
B9SZF6_RICCO	2.2e-77	67.0	RNA and export factor binding ...	[more]
A0A059D538_EUCGR	1.0e-74	67.5	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo24988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
THO4B_ARATH	1.9e-66	57.2	THO complex subunit 4B OS=Arab...	[more]
THO4A_ARATH	1.9e-58	58.6	THO complex subunit 4A OS=Arab...	[more]
THOC4_BOVIN	1.3e-43	45.5	THO complex subunit 4 OS=Bos t...	[more]
THOC4_HUMAN	2.3e-43	45.1	THO complex subunit 4 OS=Homo ...	[more]
THOC4_MOUSE	6.6e-43	45.6	THO complex subunit 4 OS=Mus m...	[more]

BLAST of Spo24988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G02530.1	1.1e-67	57.2	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G59950.5	8.3e-60	58.2	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G37720.1	9.2e-43	39.6	ALWAYS EARLY 4	[more]
AT1G66260.1	7.6e-37	39.2	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G37220.1	2.7e-10	37.5	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..168 score: 4.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 score: 1.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 97..174 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 89..197 score: 1.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 33..59 score: 2.58E-22coord: 91..171 score: 2.58
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 196..247 score: 9.
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 178..251 score: 2.3
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..251 score: 1.8
None	No IPR available	PANTHER	PTHR19965:SF29	SUBFAMILY NOT NAMED	coord: 1..251 score: 1.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding