Spo25004.1 (mRNA) | SpinachBase

Overview


Name	Spo25004.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I P700 chlorophyll a apoprotein A2 (1.97.1.12) (PSI-B) (PsaB)
Location	SpoScf_36936 : 310 .. 990 (+)
Sequence length	582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTAGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGGTGGTATACAATAGGTTTACGCACTAATGAAGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTGTTATATCTTTACTAGGGGGTTGGTTACACCTACAACCAAAATGGAAACCGAGCGTTTCGTGGTTCAAAAATGCCGAATCCCGTCTCAACCATCACTTGTCAGGACTCTTTGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTTCATGTCGCTATTCCCGGATCCAGAGGAGAGTACGTTCGATGGAATAATTTCTTAGACGTATTACCACATCCTCAAGGATTAGGTCCCCTTTTTACA

mRNA sequence

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTAGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGGGGTTGGTTACACCTACAACCAAAATGGAAACCGAGCGTTTCGTGGTTCAAAAATGCCGAATCCCGTCTCAACCATCACTTGTCAGGACTCTTTGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTTCATGTCGCTATTCCCGGATCCAGAGGAGAGTACGTTCGATGGAATAATTTCTTAGACGTATTACCACATCCTCAAGGATTAGGTCCCCTTTTTACA

Coding sequence (CDS)

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTAGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGGGGTTGGTTACACCTACAACCAAAATGGAAACCGAGCGTTTCGTGGTTCAAAAATGCCGAATCCCGTCTCAACCATCACTTGTCAGGACTCTTTGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTTCATGTCGCTATTCCCGGATCCAGAGGAGAGTACGTTCGATGGAATAATTTCTTAGACGTATTACCACATCCTCAAGGATTAGGTCCCCTTTTTACA

Protein sequence

MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGGWLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25004	Spo25004	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25004.1	Spo25004.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25004.1.exon.1	Spo25004.1.exon.1	exon
Spo25004.1.exon.2	Spo25004.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25004.1.CDS.1	Spo25004.1.CDS.1	CDS
Spo25004.1.CDS.2	Spo25004.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo25004.1 vs. NCBI nr
Match: gi|608608780|gb|AHW52183.1| (photosystem I P700 apoprotein A2 (chloroplast) [Rhazya stricta])

HSP 1 Score: 409.5 bits (1051), Expect = 3.400e-111
Identity = 193/227 (85.02%), Postives = 194/227 (85.46%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG 
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           GWLHLQPKWKPS+SWFKNAESRLNHHLS
Sbjct: 121 YQWGDTIGLRTNEDLYTGALFLLFLSALFLIAGWLHLQPKWKPSLSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. NCBI nr
Match: gi|756877062|ref|YP_009113853.1| (photosystem I P700 apoprotein A2 (chloroplast) [Stangeria eriopus])

HSP 1 Score: 385.6 bits (989), Expect = 5.200e-104
Identity = 181/227 (79.74%), Postives = 190/227 (83.70%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIF+W
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFMW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           GWLHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLSISAIFLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. NCBI nr
Match: gi|885000877|ref|YP_009158602.1| (photosystem I P700 apoprotein A2 (chloroplast) [Encephalartos lehmannii])

HSP 1 Score: 380.9 bits (977), Expect = 1.300e-102
Identity = 181/227 (79.74%), Postives = 189/227 (83.26%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G LHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFISAIFLIAGRLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. NCBI nr
Match: gi|885000613|ref|YP_009158341.1| (photosystem I P700 apoprotein A2 (chloroplast) [Macrozamia mountperriensis])

HSP 1 Score: 380.9 bits (977), Expect = 1.300e-102
Identity = 181/227 (79.74%), Postives = 189/227 (83.26%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G LHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFISAIFLIAGRLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. NCBI nr
Match: gi|885000789|ref|YP_009158515.1| (photosystem I P700 apoprotein A2 (chloroplast) [Lepidozamia peroffskyana])

HSP 1 Score: 380.9 bits (977), Expect = 1.300e-102
Identity = 181/227 (79.74%), Postives = 189/227 (83.26%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G LHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFISAIFLIAGRLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Match: A0A0A7BZJ5_9GENT (Photosystem I P700 chlorophyll a apoprotein A2 OS=Rhazya stricta GN=psaB PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.400e-111
Identity = 193/227 (85.02%), Postives = 194/227 (85.46%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG 
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           GWLHLQPKWKPS+SWFKNAESRLNHHLS
Sbjct: 121 YQWGDTIGLRTNEDLYTGALFLLFLSALFLIAGWLHLQPKWKPSLSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Match: M0UB86_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 8.700e-106
Identity = 179/194 (92.27%), Postives = 182/194 (93.81%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGG 120
           TSGNLFHVAWQGNFESW+QDPLHVRPIAHAIWDPHFGQPAVEAFTRG            G
Sbjct: 61  TSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDPHFGQPAVEAFTRG-----------AG 120

Query: 121 WLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFL 180
           WLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRG+YVRWNNFL
Sbjct: 121 WLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGQYVRWNNFL 180

Query: 181 DVLPHPQGLGPLFT 195
           DVLP+PQGLGPLFT
Sbjct: 181 DVLPYPQGLGPLFT 183

[Close]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Match: A0A0A6Z6X6_STAER (Photosystem I P700 chlorophyll a apoprotein A2 OS=Stangeria eriopus GN=psaB PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 3.600e-104
Identity = 181/227 (79.74%), Postives = 190/227 (83.70%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIF+W
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFMW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           GWLHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLSISAIFLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Match: A0A0A6Z868_9SPER (Photosystem I P700 chlorophyll a apoprotein A2 OS=Macrozamia mountperriensis GN=psaB PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 9.000e-103
Identity = 181/227 (79.74%), Postives = 189/227 (83.26%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G LHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFISAIFLIAGRLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Match: A0A0A6Z7X1_LEPPR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lepidozamia peroffskyana GN=psaB PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 9.000e-103
Identity = 181/227 (79.74%), Postives = 189/227 (83.26%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G LHLQPKWKPSVSWFKNAESRLNHHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFISAIFLIAGRLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFL+VLP+PQGLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Match: PSAB_CYCTA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cycas taitungensis GN=psaB PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 9.800e-103
Identity = 178/227 (78.41%), Postives = 187/227 (82.38%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA RFP+FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWD HFGQPAVEAFTRGGA GPVNIA+SG 
Sbjct: 61  TSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDLHFGQPAVEAFTRGGAPGPVNIAHSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           G  HLQPKWKPSVSWFKNAESRL+HHLS
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGRFHLQPKWKPSVSWFKNAESRLDHHLS 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRGE+VRW+NFLDVLP+P+GLGPLFT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGEHVRWDNFLDVLPYPRGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Match: PSAB_CHLVU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorella vulgaris GN=psaB PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.100e-96
Identity = 165/227 (72.69%), Postives = 179/227 (78.85%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA +FP+FSQ LAQDPTTRR+WFGIATAHDFESHD +TEERLYQ IFASHFGQLAIIFLW
Sbjct: 1   MATKFPKFSQALAQDPTTRRLWFGIATAHDFESHDGMTEERLYQKIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG- 120
           TSGNLFHVAWQGNFE WVQDPLH+RPIAHAIWDPHFGQ AVEAFTRGGA GPVNI+ SG 
Sbjct: 61  TSGNLFHVAWQGNFEQWVQDPLHIRPIAHAIWDPHFGQAAVEAFTRGGASGPVNISTSGV 120

Query: 121 --------------------------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                                           GWLHLQP ++P++SWFKNAESRLNHHL+
Sbjct: 121 YQWWYTIGIRTNQELYVGSIFLLVLAGLFLFAGWLHLQPSFQPALSWFKNAESRLNHHLA 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
           GLFGVSSLAWTGHLVHVAIP SRG++V W+NFL VLPHP GL P FT
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLTVLPHPAGLTPFFT 227

[Close]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Match: PSAB_SYNS9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC9902) GN=psaB PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.400e-88
Identity = 151/227 (66.52%), Postives = 171/227 (75.33%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA +FP FSQGLAQDPTTRRIW+GIATAHDFESHD +TEERLYQ +F++HFG LAII LW
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAIIGLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVN------ 120
            SGNLFH+AWQGNFE WV DPLHVRPIAHAIWDPHFGQ A++AFT+ GA  PVN      
Sbjct: 61  VSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAYSGL 120

Query: 121 -------------IAYSG--------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                          Y G              GWLHLQPK++PS++WFKNAESRLNHHL+
Sbjct: 121 YHWFYTIGMTTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNHHLA 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
            LFG SS+AWTGHLVHVAIP SRG++V W+NFL V+PHP GLGP FT
Sbjct: 181 VLFGFSSIAWTGHLVHVAIPESRGQHVGWDNFLSVMPHPAGLGPFFT 227

[Close]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Match: PSAB_SYNSC (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC9605) GN=psaB PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.400e-88
Identity = 151/227 (66.52%), Postives = 172/227 (75.77%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA +FP FSQGLAQDPTTRRIW+GIATAHDFESHD +TEERLYQ +F++HFG LAII LW
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAIIGLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVN------ 120
            SGNLFH+AWQGNFE WV DPLHVRPIAHAIWDPHFGQ A++AFT+ GA  PVN      
Sbjct: 61  VSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAYSGL 120

Query: 121 -------------IAYSG--------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                          Y G              GWLHLQPK++PS++WFKNAESRLNHHL+
Sbjct: 121 YHWFYTIGMKTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNHHLA 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
            LFG SS+AWTGHLVHVAIP +RG++V W+NFL+VLPHP GLGP FT
Sbjct: 181 VLFGFSSIAWTGHLVHVAIPEARGQHVGWDNFLNVLPHPAGLGPFFT 227

[Close]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Match: PSAB_SYNPW (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain WH7803) GN=psaB PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.400e-88
Identity = 150/227 (66.08%), Postives = 172/227 (75.77%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MA +FP FSQGLAQDPTTRRIW+GIATAHDFESHD +TEE+LYQ +F++HFG LAII LW
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEEKLYQKLFSTHFGHLAIIGLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVN------ 120
            SGNLFH+AWQGNFE WV DPLHVRPIAHAIWDPHFGQ A++AFT+ GA  PVN      
Sbjct: 61  VSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAYSGL 120

Query: 121 -------------IAYSG--------------GWLHLQPKWKPSVSWFKNAESRLNHHLS 180
                          Y G              GWLHLQPK++PS++WFKNAESRLNHHL+
Sbjct: 121 YHWFYTIGMTTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNHHLA 180

Query: 181 GLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
            LFG SS+AWTGHLVHVAIP SRG++V W+NFL+V+PHP GLGP FT
Sbjct: 181 VLFGFSSIAWTGHLVHVAIPESRGQHVGWDNFLNVMPHPAGLGPFFT 227

[Close]

BLAST of Spo25004.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 302.8 bits (774), Expect = 1.600e-82
Identity = 157/238 (65.97%), Postives = 166/238 (69.75%), Query Frame = 1


		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGG 120
           TSGNLFHVAWQGNFE+WVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSG 
Sbjct: 61  TSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 WLHLQPKWKPSVSWFKNAESRLNHHL-SG---LFGVSSLAWTGHLVH------------- 180
           +            W+     R N  L +G   L  +S+L+  G  +H             
Sbjct: 121 Y-----------QWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFK 180

Query: 181 ---------------------------VAIPGSRGEYVRWNNFLDVLPHPQGLGPLFT 195
                                      VAIP SRGEYVRWNNFL+VLPHPQGLGPLFT
Sbjct: 181 NAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFT 227

[Close]

BLAST of Spo25004.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-24
Identity = 70/191 (36.65%), Postives = 98/191 (51.31%), Query Frame = 1


		  
Query: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW SG  F
Sbjct: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 91

Query: 68  HVAWQGNFE------------SWVQDPLHVRPIAHA-----------------IWDPHFG 127
           H A   N+E            + V  P+  + I +                  IW     
Sbjct: 92  HGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGI 151

Query: 128 QPAVEAF-TRGGALGPVNIAYSGGWLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLA 168
              ++ + T  GAL    +    GW H   K  P ++WF++ ES LNHHL+GL G+ SL+
Sbjct: 152 TSELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGLGSLS 211

The following BLAST results are available for this feature:

BLAST of Spo25004.1 vs. NCBI nr
BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
BLAST of Spo25004.1 vs. TAIR (Arabidopsis)

BLAST of Spo25004.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|608608780\|gb\|AHW52183.1\|	3.4e-111	85.0	photosystem I P700 apoprotein ...	[more]
gi\|756877062\|ref\|YP_009113853.1\|	5.2e-104	79.7	photosystem I P700 apoprotein ...	[more]
gi\|885000877\|ref\|YP_009158602.1\|	1.3e-102	79.7	photosystem I P700 apoprotein ...	[more]
gi\|885000613\|ref\|YP_009158341.1\|	1.3e-102	79.7	photosystem I P700 apoprotein ...	[more]
gi\|885000789\|ref\|YP_009158515.1\|	1.3e-102	79.7	photosystem I P700 apoprotein ...	[more]

BLAST of Spo25004.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0A7BZJ5_9GENT	2.4e-111	85.0	Photosystem I P700 chlorophyll...	[more]
M0UB86_MUSAM	8.7e-106	92.2	Uncharacterized protein OS=Mus...	[more]
A0A0A6Z6X6_STAER	3.6e-104	79.7	Photosystem I P700 chlorophyll...	[more]
A0A0A6Z868_9SPER	9.0e-103	79.7	Photosystem I P700 chlorophyll...	[more]
A0A0A6Z7X1_LEPPR	9.0e-103	79.7	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo25004.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSAB_CYCTA	9.8e-103	78.4	Photosystem I P700 chlorophyll...	[more]
PSAB_CHLVU	1.1e-96	72.6	Photosystem I P700 chlorophyll...	[more]
PSAB_SYNS9	1.4e-88	66.5	Photosystem I P700 chlorophyll...	[more]
PSAB_SYNSC	1.4e-88	66.5	Photosystem I P700 chlorophyll...	[more]
PSAB_SYNPW	2.4e-88	66.0	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo25004.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
ATCG00340.1	1.6e-82	65.9	Photosystem I, PsaA/PsaB prote...	[more]
ATCG00350.1	2.5e-24	36.6	Photosystem I, PsaA/PsaB prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	GENE3D	1.20.1130.10		coord: 4..193 score: 4.5
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 118..181 score: 3.0E-23coord: 8..119 score: 9.3
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 4..192 score: 7.72
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 3..194 score: 3.5E
None	No IPR available	PANTHER	PTHR30128:SF4	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 3..194 score: 3.5E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity