Spo25050.1 (mRNA)

Overview
NameSpo25050.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 14182025 .. 14188108 (-)
Sequence length1825
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGTCATCACCATCTATACCTTGTCATTTGATATCATTTGCATTTAAGTCCTTAGGGGAGTAGTTCTCTGAGTTTCCTGAGATGAAAACTAGGAACAAAATACTTGCTGATGCAAAACTATCTTAATTGGGAAATTGGAAGCAGTTTAGGGAATTGAATTTATGAGAGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGGTAAATGTAACGAAACATAAAGGGGTAGTGCTATTATTATTTGTTCACAGATGGTCTCATGGCTCGTACTCACTAAAAGATTGAATGCGATGCTTCATTTTGCCTATGTATGTCTTCAATTCTGTGAATTATATTCCTGAATTTTATAAACGATGTTGTTGCTTGAAGGTCACATGATATAAGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAGTAAGTACTGTGAGGCCTGGAAGTTGCTTGAGGTAGATGATTAGACCACTTGATCAATGGCCTCATCTTCGATATTTCGAGGCAATAGAAGTTAAAGATCCACTGTATTTAGTCTTTTAATTAATGCCTTCTGTTGCAATGCTGTCATTTATATGTCACTGCCAGTTTTCTGGGGTTCTGTCACAATTTTAAGATCTTATATTTCCTCTCTTTTTTATTCCATTCTGTTGGCCATTGTCTGCCATAAAAGGGTGATTTGATTATTTATTCATGTAGTCATGACTGCCAATGAAATGTACCTAGTAAATGAAAGAATTCCTCTGAAATTTATGTCTGTTTGATTTCCAGGACATTCAACCTCTTGCATAAACTTAAATTGTGGAACATGAACGATTTTACAAAAGGAAACTACAGCAGTTACTTCAATGCACGAAGTTGGTGGTTCTCCTTGACAATGGTGATCGAAATTAGTATAATCATCTATTCTTTAGACAGCCAAGATGCGTCCTTGACTCGCTATTTGGATTAAGGAAGGCCAATCCTTTCGTGTACCACTCAATCACTTTCTCCTGCAATCAGGTATCAGCATATTCATCAGTAATTACAGTACTATAACTTTGATAGTGCAATATAGTGAGTTCATTGACTAGAGGCGTTAGTGGTAGAAACAACGAAAAATAGTTGATTGGACGTGTTTTAGATTCGTGTACCTCTTGGCAAGTTACGCTTATGTTTGGGACTGAGAAGGATGTTTCTAGCTTTTTGCAGCTCACTTATTGCTTCACTTATCTTCATCCGATCACGTGGTAAATGACTTGAGCAAGCAACTCCAATCTTTATCACCGACACCATGCACTCCTCTGTTTTTCGAAGCATTTCATGGGGTTTTGGTCCCCTTTTGTCAGGTTCGTCACTTTCATCCTCCATTAGTGTAGAGTCAACAATATGTAGCACTTGGTGAGGCAATGCTGCCTTTGCAAACATATGGAGGTTGAAATCTTCCTTGAACATATTATCGGTTGGTCTCCTTTTTGTCATTAGCTCAAGCAGTAAGATTCCGTAACTGTATAGATCAGCTTCAGGGGATGCTTCACCTCCCAAGCCGTACTCTAGGACAAATAAAATTATATCCAAAGTTAAAACTCAAATACCTATACTTGCTTATAATTTGTTAGTTTCTGTATCCTCAGTCCTTGATTAGTTTATCAATTTTCTTTTGATATTTGATTTCACAAAGCAAGGAGTTAATTATGATTAAATAAATTTCTTTGATGACAAAAAAGCTTCATGTTATATCCTAGAATTAGGGGAAAAAAAAAGTTTAGGTACAAAAAGAGGATAATATATGCTTTTGGTTATCTAATGAGCCAATTAAGATAAAGTTATTAAGATGTCATGAACTGAAGAAAAAATATACCCTTTAAGCAAAATAATTACCTGGAGCGGCATAGCCAACAGTCCCCCTGACTCCAATTGAACTGCTTTGGTTTGGGTGGAGGGGTTGACCAAGAACCTTTGCTAACCCGAAATCTCCGACATGGGCAACCATGTCATTATCAAGCAATATGTTGTTTGGTTTAAGGTCGCAGTGCACTATCGGGGTTTCACACTCACATTGGAGATAGTTGAGTGCATGAGCCACGTCAATGGCTATATTCACCCTTTGGAGAAGGCTCAGGTAACCACTTTTATATAACCATTTATCAAGACTTCCATTGGGCATGAACTCATAGACAAGAGCTTTGAAATCATTTCTTTTGAAGTCTATACTTGAGCAAGCTGTTAGTATCCCAACCAGATTACGGTGACGAATATACCTTAATGCCTCACACTCTGCCATGAAACTCTTAGACCCACCTCGTTGTTGCAAGTTGAGTACTTTTACTGCCACTGTCTTTCCATCAAGAATCCCTTTGAAAACAGATCCAAAAGTACCCGAACCGAGTAGATTTTCTTGAGAAAATCCATCTGTTGCTTTGAGTAGCATGTCATATGATACTTTCAAGAACCTCTCCTTTACTAGTGCGTCTGATGAAGAAGTAGATTTTCTTTTTTTGCTCTGACCTTTCAAGTATAGCCATATGCATATCGCCATGACCAACACCCCAACAAATGCACTAGCCGTTATAATTGTCAGCTTGAGAGCACGAGACATTCTCCTTTTCTTCCTTTCATTCTCCACACATCTTGGTAGGTGTAGCTTAGAACTTCCTCCACAAAGGTTTTTGTTACCAACAAAAGATGTTGCACTTGAATTTGCAAAAACTCCTTTTGTTGGAACTCTTCCCTCGAAATTGTTGTGAGATAAGTTTAAGACTATCAACGGAAAAGTAGCAAAATATTCTGGAACGGGTCCAGAAAGATTGTTCTGAGAAAGATCAAGTTTCAAAAGGCTTTTTAAAGAGGCAAATGATGGAGGAATAAGACCATGGAAGAAATTATCTTCCATGTATAATTCTTGTAGAGCAGGTAAACTGCTAAAGACATCCGGAATACTCCCAAAAAATTTATTATTTGACATTGAAAACACTTCTAAATTTATTTGCTTGCTAATCTCCATAGTTAGAGGCCCTTGAAAATGATTTTGATCTAACCATAATTGAATGAAGTTTGTAGTTTTTGCAAACAGCTCAATGGGTAAGGAACCATTGAATTGATTATATGATAAATACAAGTATAACAAGTTTGCACAATTACCAAGGCTTGAAGGTACTCTGCCTTGCAACTTATTTTCATAAAAATTGAGATTGCTCAAATGCGATAAATTTCCGAATGAACTGGGAATTTCACCTGTTAGTCTATTGAAACTTAGATCTAGAATCTCTAGATTTTGAAGCTCCCCAAGATCTCGAGGAACGGTTCCTGTTAGGCCACTTGATTTCATGGATAAAATCCTAAGATTGTTTAGATTACCAAGACCTACAGGGATTCCTCCAGTGACTTGATTTCCTTCAATCCAAATCTCAATTAAATTGGTTGAAAGATTAGCCAGAACTTTTGGAACTAATCCTGTGAATTGGTTGTTCCCCACATCCAGGCTTTCCAATTTGCTACAGTTAACTAGTTTAGTAATAAAGTTGATGTCTCCTGATAAATTATTATTACTAATGACTAGCCTTTGCAGGTTATAGAGGTGGCCAAAATGTAGATTGGAAATGGTGCCTTTGAAGTAGTTGTTTGATAACTCAATGGATCGAAGACTTGTGAGGTTATGTATGGAGATTGGTAATGGCCCCGAAAAATAGTTATAAGCAAGTTGTAGATATTGTAATTGAGGAAGTGTTAAGGCTATATGTGGCGGAATACTTCCTCGCAATTGGTTGTAAGCCAAGTACAATATCTGAAGAGAGGAGAGATTGAAGATGGACGGGGGAATTATACCTGACAGTTGATTCATAGACAAGTCTAATATTTGAAGCGAGGAGAGGTTAGAGATGGACGGGGGAATTATACCTGAGAGTTGATTTGTTGAGAGCTCCAAACTAGTTAAGTTGGTCAACTTAGGAATGTTGTCCGGAATAGGACCTGTAAATGCATTTGTGTGGCCCTTAATACGTACCAAAGATGTAAGATTCAGTATCAGTTTAAAGATAGGCCCAGAGAGTTTATTTTTGTGAAGCCAAAGCCATTTGAGGTTGGACAACGCTCCTAATTCCATCGGAAGTTCACCTTCTAGATTGTTGATAGCAAGAGAAAGATTTTGTAAGTTGATGCAACTTGATAAACTGGCTGGAATTCCTCCACTGAGGGTGTTGTTAGGAAGATATAGTGATTGTAGCCTCAAAAGACGGCCGATTTCAGGGGGAATTGAGCCATGTAGGCTATTACTGTCAAGCCAAATGATATTTAGAAAACTAAGGTTCCCTATGAAGGGTGATATGGTTCCTGACAAACCTCTACCAAACAGCTTTAGGCCAGTTACTCTTTTATGTTTGCGGCCGCAAATGACACCCTCCCATAAACAATGGTGAAGAGAGTGATTCCATGAGCTTAAAACTCCGTTGGGATGAAGATCGATTAATTGACTCTTGATTGCTAGCAATGCCATATAGTCTGTTTCGTTACTAATGGCATTAGCTACTCTAAGTGGATGTGGCTGCATTGCAATTACAACAACCAAGAGGATAACAGCTGCTTGTGTGTATAACAGAGGTTGTGGCTTCATTTTCTCTTCTTTTGTATTATTTGGTGATTTTTAGCTTCCTTTCTTACTCTATATATAGATATTTAAGCAATATAGTACTCCATTAAATTTGTCGTCAACTTCTTTCTGTTGTTTAACATCAAGAGTATACAAATAATGCAGTCGTCGTTTACTTTCGAATTTGAAAATGATATTCCATTTGTGTGGTTGTTTACTTGTATGGAAAAACATCTTAATGTGAAATACTCTTTCTGAGTTTGAAATAAGTTCTCATTTCTCTAACATACAAATTTTAGGAGAGAGTATATAGTACAATTTCATTGACTTTGGCGAGTAAAGGAGGTTAGGCTCTACAATTTCATTGACTTTGGTGAGTAAAGGACGTTAGGCTTTCTTTGTAACATAAAGAGATCGAAAAAGAGACGAAACTGATAAGTTAGTTGAAATTGAAAAGATAGTACTCCCTCCGTATTTTTTCAAGAGATACACTTGTCTTTTTCGGCCGTATTTATTTAAGAGATACACTTGCCATTTTTAGTAACTTATCAACCCCACCATCTAATTAAATAATACATCTAATATACCCTATCACCCACCATCCTATGAAACAAATATTTTCATAAACCCACCCCACCCTCCACCTACCAAAATGACATGGTCCCACATATTTAATTATTAAAATATCTATCCAACCCCACTTGCTTTATTATTTTATTTCATTCAATTATTCTTCTTAATACCCGTACCCGACCAAGTGTATCTCTTAAAAAAAATACGGAGGGAGTAGTTGAACTGATAAGGTGTTCACCTGACAATGAATTTGAAGGTTGTACGAAGTATGAAACAAGTAAAAATATACATGAATTAAACGCTTGTAGATTGATAGAATTTTGTTTCGTAATTTAATTCAATAAGTATACGTTATATTTAGATTTCTTTACGTCATCTGATTTTTTACCAGCTTTTTTTTTTTTTTTTGAGGGAGATTTTTACCAGTCAGTCATGATAGAAAAAGTACTATAACACGTTAGCATACTCAAAATTCTATTATTTCTCATATTAAAAAATAAAATAGTTTAAATGAAAAAGGCAAAAGAATTTGAAGTTACAAGTGTTGCGAACTTGCAACCATTTATTGAGATGAAATTAAGTGAGTTTGAATTATGATGCAGTGTCTTAGGAGTATTATTGAAGTCTAATATGGCGGCGTTGGCGAGCCTTGTTTTGGGCCCGGATACAGGAACAATGAAGGAGACGTTATTTAACTTTTCCGGATAAAGTTGACTACTGTACTTAATAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTTACGCATGCCAATGCA

mRNA sequence

ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAGACATTCAACCTCTTGCATAAACTTAAATTGTGGAACATGAACGATTTTACAAAAGGAAACTACAGCAGTTACTTCAATGCACGAAGTTGGTGGTTCTCCTTGACAATGGTGATCGAAATTAGTATAATCATCTATTCTTTAGACAGCCAAGATGCGTCCTTGACTCGCTATTTGGATTAAGGAAGGCCAATCCTTTCGTGTACCACTCAATCACTTTCTCCTGCAATCAGCTTTTTGCAGCTCACTTATTGCTTCACTTATCTTCATCCGATCACGTGGTAAATGACTTGAGCAAGCAACTCCAATCTTTATCACCGACACCATGCACTCCTCTGTTTTTCGAAGCATTTCATGGGGTTTTGGTCCCCTTTTGTCAGGTTATAGAGGTGGCCAAAATGTAGATTGGAAATGGTGCCTTTGAAGTAGTTGTTTGATAACTCAATGGATCGAAGACTTGTGAGGTTATGTATGGAGATTGGTAATGGCCCCGAAAAATAGTTATAAGCAAGTTGTAGATATTGTAATTGAGGAAGTGTTAAGGCTATATGTGGCGGAATACTTCCTCGCAATTGGTTGTAAGCCAAGTACAATATCTGAAGAGAGGAGAGATTGAAGATGGACGGGGGAATTATACCTGACAGTTGATTCATAGACAAGTCTAATATTTGAAGCGAGGAGAGGTTAGAGATGGACGGGGGAATTATACCTGAGAGTTGATTTGTTGAGAGCTCCAAACTAGTTAAGTTGGTCAACTTAGGAATGTTGTCCGGAATAGGACCTGTAAATGCATTTGTGTGGCCCTTAATACGTACCAAAGATGTAAGATTCAGTATCAGTTTAAAGATAGGCCCAGAGAGTTTATTTTTGTGAAGCCAAAGCCATTTGAGGTTGGACAACGCTCCTAATTCCATCGGAAGTTCACCTTCTAGATTGTTGATAGCAAGAGAAAGATTTTGTAAGTTGATGCAACTTGATAAACTGGCTGGAATTCCTCCACTGAGGGTGTTGTTAGGAAGATATAGTGATTGTAGCCTCAAAAGACGGCCGATTTCAGGGGGAATTGAGCCATGTAGGCTATTACTGTCAAGCCAAATGATATTTAGAAAACTAAGGTTCCCTATGAAGGGTGATATGGTTCCTGACAAACCTCTACCAAACAGCTTTAGGCCAGTTACTCTTTTATGTTTGCGGCCGCAAATGACACCCTCCCATAAACAATGGTGAAGAGAGTGATTCCATGAGCTTAAAACTCCGTTGGGATGAAGATCGATTAATTGACTCTTGATTGCTAGCAATGCCATATAGTCTGTTTCGTTACTAATGGCATTAGCTACTCTAAGTGGATGTGGCTGCATTGCAATTACAACAACCAAGAGGATAACAGCTGCTTGTGTGTATAACAGAGTGTCTTAGGAGTATTATTGAAGTCTAATATGGCGGCGTTGGCGAGCCTTGTTTTGGGCCCGGATACAGGAACAATGAAGGAGACGTTATTTAACTTTTCCGGATAAAGTTGACTACTGTACTTAATAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTTACGCATGCCAATGCA

Coding sequence (CDS)

ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAG

Protein sequence

MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSLGESFINGGKSLVMEPITECWMRILKFGSITNLADVSCPNLDKDQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25050Spo25050gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25050.1Spo25050.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25050.1.CDS.4Spo25050.1.CDS.4CDS
Spo25050.1.CDS.3Spo25050.1.CDS.3CDS
Spo25050.1.CDS.2Spo25050.1.CDS.2CDS
Spo25050.1.CDS.1Spo25050.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25050.1.utr3p.4Spo25050.1.utr3p.4three_prime_UTR
Spo25050.1.utr3p.3Spo25050.1.utr3p.3three_prime_UTR
Spo25050.1.utr3p.2Spo25050.1.utr3p.2three_prime_UTR
Spo25050.1.utr3p.1Spo25050.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25050.1.exon.7Spo25050.1.exon.7exon
Spo25050.1.exon.6Spo25050.1.exon.6exon
Spo25050.1.exon.5Spo25050.1.exon.5exon
Spo25050.1.exon.4Spo25050.1.exon.4exon
Spo25050.1.exon.3Spo25050.1.exon.3exon
Spo25050.1.exon.2Spo25050.1.exon.2exon
Spo25050.1.exon.1Spo25050.1.exon.1exon


Homology
[Close]
BLAST of Spo25050.1 vs. NCBI nr
Match: gi|902198047|gb|KNA13588.1| (hypothetical protein SOVF_115310 [Spinacia oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 34
          MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL
Sbjct: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 33
[Close]
BLAST of Spo25050.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R253_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_115310 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 34
          MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL
Sbjct: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 33
The following BLAST results are available for this feature:
BLAST of Spo25050.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902198047|gb|KNA13588.1|1.5e-9100.hypothetical protein SOVF_1153... [more]
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BLAST of Spo25050.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R253_SPIOL1.0e-9100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25050.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25050.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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