Spo25101.1 (mRNA) | SpinachBase

Overview


Name	Spo25101.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	C2H2-type zinc finger protein
Location	chr4 : 4940380 .. 4940718 (+)
Sequence length	339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAAAGGCGAAGCCAAAGAAGCACACCGCCAAGGAACTCGCGGCGAAACTCGACGCCGCAACCACCAATCGCGGCGGAGGTAAAGCCGGTGTTGCTGATCGTACAGGCGCCGTAAAGGGAGGTCATGCGAAGATGGAATGCCCTCTTTGCAAAGTCACCGCCCCAGATGTGAAATCGATGAAAATTCATCATGAAGCTAAACACCCTAAAATCCCTTTTGATGAGAACAAGATCAGCAATCTCCATGCTTCAACACCTGCAGCAGCACCATCTACATCTGTCGCTGATCCAAATAAGCCGAAACCTGGAATTCGTGGAAGTTTGAAGAAGTAG

mRNA sequence

ATGACAGGAAAGGCGAAGCCAAAGAAGCACACCGCCAAGGAACTCGCGGCGAAACTCGACGCCGCAACCACCAATCGCGGCGGAGGTAAAGCCGGTGTTGCTGATCGTACAGGCGCCGTAAAGGGAGGTCATGCGAAGATGGAATGCCCTCTTTGCAAAGTCACCGCCCCAGATGTGAAATCGATGAAAATTCATCATGAAGCTAAACACCCTAAAATCCCTTTTGATGAGAACAAGATCAGCAATCTCCATGCTTCAACACCTGCAGCAGCACCATCTACATCTGTCGCTGATCCAAATAAGCCGAAACCTGGAATTCGTGGAAGTTTGAAGAAGTAG

Coding sequence (CDS)

ATGACAGGAAAGGCGAAGCCAAAGAAGCACACCGCCAAGGAACTCGCGGCGAAACTCGACGCCGCAACCACCAATCGCGGCGGAGGTAAAGCCGGTGTTGCTGATCGTACAGGCGCCGTAAAGGGAGGTCATGCGAAGATGGAATGCCCTCTTTGCAAAGTCACCGCCCCAGATGTGAAATCGATGAAAATTCATCATGAAGCTAAACACCCTAAAATCCCTTTTGATGAGAACAAGATCAGCAATCTCCATGCTTCAACACCTGCAGCAGCACCATCTACATCTGTCGCTGATCCAAATAAGCCGAAACCTGGAATTCGTGGAAGTTTGAAGAAGTAG

Protein sequence

MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVKSMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25101	Spo25101	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25101.1	Spo25101.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25101.1.exon.1	Spo25101.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25101.1.CDS.1	Spo25101.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo25101.1 vs. NCBI nr
Match: gi|902230384|gb|KNA21851.1| (hypothetical protein SOVF_039600 [Spinacia oleracea])

HSP 1 Score: 222.6 bits (566), Expect = 3.400e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK
Sbjct: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 112

[Close]

BLAST of Spo25101.1 vs. NCBI nr
Match: gi|731326280|ref|XP_010673939.1| (PREDICTED: uncharacterized protein LOC104890230 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 186.8 bits (473), Expect = 2.100e-44
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKELAAK DAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKELAAKADAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           SM+IHH+AKHPKIPFDENKI+NLHAS          +DPNKPKPGIRGS  K
Sbjct: 61  SMQIHHDAKHPKIPFDENKINNLHAS--------GTSDPNKPKPGIRGSKNK 104

[Close]

BLAST of Spo25101.1 vs. NCBI nr
Match: gi|326509153|dbj|BAJ86969.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 179.9 bits (455), Expect = 2.500e-42
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG  DR G  KGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQEKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAP--STSVADPNKPKPGIRGSLKK 113
           SM+IHHEA+HPK+PFD +KI+NLH ST AAAP  + +VA  +KPKPG+RGSLKK
Sbjct: 61  SMQIHHEARHPKLPFDPDKINNLHGSTAAAAPAAAAAVASSSKPKPGVRGSLKK 114

[Close]

BLAST of Spo25101.1 vs. NCBI nr
Match: gi|326524764|dbj|BAK04318.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 179.9 bits (455), Expect = 2.500e-42
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG  DR G  KGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQEKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAP--STSVADPNKPKPGIRGSLKK 113
           SM+IHHEA+HPK+PFD +KI+NLH ST AAAP  + +VA  +KPKPG+RGSLKK
Sbjct: 61  SMQIHHEARHPKLPFDPDKINNLHGSTAAAAPAAAAAVASSSKPKPGVRGSLKK 114

[Close]

BLAST of Spo25101.1 vs. NCBI nr
Match: gi|595836944|ref|XP_007207358.1| (hypothetical protein PRUPE_ppa013572mg [Prunus persica])

HSP 1 Score: 177.9 bits (450), Expect = 9.500e-42
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG+ADRTG  KGGHAKMECP CK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGIADRTGKEKGGHAKMECPHCKITAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADP----NKPKPGIRGSLKK 113
           SM+IHHEA+HPKIPF+E KI N HAST + + ST VA+P    NKP+PG+RGSLKK
Sbjct: 61  SMQIHHEARHPKIPFEEEKIVNRHAST-STSTSTQVAEPSKDANKPRPGVRGSLKK 115

[Close]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQN8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039600 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.400e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK
Sbjct: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 112

[Close]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLW0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g075260 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.400e-44
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKELAAK DAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKELAAKADAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           SM+IHH+AKHPKIPFDENKI+NLHAS          +DPNKPKPGIRGS  K
Sbjct: 61  SMQIHHDAKHPKIPFDENKINNLHAS--------GTSDPNKPKPGIRGSKNK 104

[Close]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Match: W5I366_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.300e-42
Identity = 89/112 (79.46%), Postives = 99/112 (88.39%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG  DR G  KGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQEKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           SM+IHHEA+HPK+PFD +KI+NLH ST AA  + +VA  +KPKPGIRGSLKK
Sbjct: 61  SMQIHHEARHPKLPFDPDKINNLHGSTAAAPAAAAVASTSKPKPGIRGSLKK 112

[Close]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Match: F2EAE6_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.700e-42
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG  DR G  KGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQEKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAP--STSVADPNKPKPGIRGSLKK 113
           SM+IHHEA+HPK+PFD +KI+NLH ST AAAP  + +VA  +KPKPG+RGSLKK
Sbjct: 61  SMQIHHEARHPKLPFDPDKINNLHGSTAAAAPAAAAAVASSSKPKPGVRGSLKK 114

[Close]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Match: F2CVU8_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.700e-42
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+AAK+DAATTNRGGGKAG  DR G  KGGHAKMECPLCKVTAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQEKGGHAKMECPLCKVTAPDVK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAP--STSVADPNKPKPGIRGSLKK 113
           SM+IHHEA+HPK+PFD +KI+NLH ST AAAP  + +VA  +KPKPG+RGSLKK
Sbjct: 61  SMQIHHEARHPKLPFDPDKINNLHGSTAAAAPAAAAAVASSSKPKPGVRGSLKK 114

[Close]

BLAST of Spo25101.1 vs. TAIR (Arabidopsis)
Match: AT3G02790.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 151.0 bits (380), Expect = 4.400e-37
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKE+ AK+DAA TNRGGGKAG+ADRTG  KGGHAK ECP CK+TAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           +M+IHHE+KHP I ++E+K+ NLHA     A S       KPKPGIRGSLKK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAES-------KPKPGIRGSLKK 105

[Close]

BLAST of Spo25101.1 vs. TAIR (Arabidopsis)
Match: AT5G16470.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 147.1 bits (370), Expect = 6.400e-36
Identity = 78/112 (69.64%), Postives = 91/112 (81.25%), Query Frame = 1


		  
Query: 1   MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGAVKGGHAKMECPLCKVTAPDVK 60
           MTGKAKPKKHTAKEL AK DAA TNRGGGKAG+ADRTG  KGGHAK ECP CK+T PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  SMKIHHEAKHPKIPFDENKISNLHASTPAAAPSTSVADPNKPKPGIRGSLKK 113
           +M+IHHE+KHPK+ ++E +  NLH +   AAP    A+ +KPKPGIRGSLKK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEA--LAAP----AESSKPKPGIRGSLKK 104

The following BLAST results are available for this feature:

BLAST of Spo25101.1 vs. NCBI nr
BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
BLAST of Spo25101.1 vs. ExPASy Swiss-Prot
BLAST of Spo25101.1 vs. TAIR (Arabidopsis)

BLAST of Spo25101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902230384\|gb\|KNA21851.1\|	3.4e-55	100.	hypothetical protein SOVF_0396...	[more]
gi\|731326280\|ref\|XP_010673939.1\|	2.1e-44	84.8	PREDICTED: uncharacterized pro...	[more]
gi\|326509153\|dbj\|BAJ86969.1\|	2.5e-42	78.9	predicted protein [Hordeum vul...	[more]
gi\|326524764\|dbj\|BAK04318.1\|	2.5e-42	78.9	predicted protein [Hordeum vul...	[more]
gi\|595836944\|ref\|XP_007207358.1\|	9.5e-42	77.5	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo25101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RQN8_SPIOL	2.4e-55	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CLW0_BETVU	1.4e-44	84.8	Uncharacterized protein OS=Bet...	[more]
W5I366_WHEAT	1.3e-42	79.4	Uncharacterized protein OS=Tri...	[more]
F2EAE6_HORVD	1.7e-42	78.9	Predicted protein OS=Hordeum v...	[more]
F2CVU8_HORVD	1.7e-42	78.9	Predicted protein OS=Hordeum v...	[more]

BLAST of Spo25101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo25101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G02790.1	4.4e-37	68.7	zinc finger (C2H2 type) family...	[more]
AT5G16470.1	6.4e-36	69.6	zinc finger (C2H2 type) family...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	At2g23090-like	GENE3D	4.10.1050.10		coord: 43..77 score: 5.
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 2..112 score: 2.3
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 28..77 score: 8.76
None	No IPR available	PANTHER	PTHR21213:SF6	SUBFAMILY NOT NAMED	coord: 2..112 score: 2.3