Spo25111.1 (mRNA)

Overview
NameSpo25111.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 11456035 .. 11459108 (-)
Sequence length285
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTGTTTTTGCATTTTTCTGGTTTTGGTTTCTTTTCTTAGTAACTGACTTTTAGTGAACCCTTCTTTTCAACCCATTTTTGGTAAGTCAACATATTCATGGTTGGTTACTTGGTTAGTGGTTATGCACTTTTACAATCCATGGTGCTTTTCCAGCAATGTCAACCGACCACGTGTTATCATATCAACCATCTATTTTTTGGGTTTTTCCAGCTACTTTCTGTTTCTCAAAAAAAAAAAAAAAAATCCGTCTGTAAAATTTCAGAAGGAAATAGAGATATGAAGAGGTTGAAAAAAAAACCAAGTTTTGGACTCTCTTCGGTCACCACTGTAATTTCAGTTAATGCTAGTAATTACCCCTGTCAAAAATTGACCAAACCTGAAAATTTTGGGTATTGAACAAGATTTTGTGACCCATAACCCAATTTTAACCGAACCTGAAAAGTAATGGGTCGAAATCCGACTGAACCTGTTTTTGACCCGACCGATTAAAAATTGTTGTATTCATAATTTATAAATGTAATTATAAGAAATTTTAAGCATATCAAGCACGTTGTTGTTACTATTGATGGGTGTAAATGTGTAATACGATTTTGATTTAAATCATACACCATTTTATGGTTGAAGTTGACTAAATATAAACTTGTGTGTGTAAATTTGTTAATTTGTGCGCATATTTTGTATACTTATTACCCAAATTAATGAAAACATAATACGTAGTACTCCATATATGTTTTAAAATATCTCAACCCTTTGGGTCGACCCGATCCCGAAAGTTATGGGTCTTGAACAAGCATGTGTAAACCCGAACCCGAAAGCAAATTTTCACAACCCGACCCGTTTGACAGGTCTACTAGCAATGGATACTACTGAAATCATTTTCTGCAATTCTGCTTTCTCTCCCTGTGATTTTATGAGAAGCAACAATTTGAAGAGAAGCAAATACAAGCAATTGCATTCATGATCTTTACAAAATAGCTACTTCGTATATAACAGTGTAATTGCAAAATGATACAGCTTAGATAGACTGCAAAATGTGGGCTATGGATGTAATTGTGAAAGAAAATGGCTTCCAAGCATAATTAATAAAGAGATTAAGCTGTAATCTTGTTTACTCTGAAGGAATCCATTGCTTGACGAATATTGCTTCCTCCTTCTCTGAATACATCTTCTGGTGCTTGTAACCTCAACTCATATAGCCTGTTGTTTTCCACTCCGATAACAGAAAGGTACCTTCGATCCCATTCAAGCCTAACCTTTCGATCCTCAGGCATCACGGCCAACTCGTTGTTGTTGGCATACGATTTGACATTCACCTGTTTTTATGCCATCAAAGTGTGTCAGAAGGGAAAACAGTAACATCCCTAATATAAATGAGCTAGTAGTCCAAAACTCCAAATTCAACAGCAAAAACCTAAATTTTCTGTAAGTCATAGACATGCTAATTGACTTGAAAAGACCATGAGTGTCACGGTCTGAATGTTTTGACACCGGATCCGTGCGGCGCCCTCTTGCCTATTGGCGGCAAGGAGGCAAGCCTTGTGCGGAATGAGTGTCTTGTGACTCGTAGGGGCACGAGTAAGCGTCTAATCCGAAAGGGGCACTCTTGCCTATTGGCGGCAAGAGCGAGGGTCGAGAGTCGAACGGGGCGCTTGTGTGCGCACAGCGGGCACAAGCGGGACCGTCGACGAGAGTGTATCTGTTTTGAGGGGGACTTTGTTGGGTCTTAGAAAGCTTAAAAGCATGCGACAGCACAATATCTATAAAGGCTAGCAACAACACATGAATTAAGCAAAGACAACTTCTGATGAGAGGTATTGGTTCATACCCCTCATAGAGGTTTATTTTGAATTAGCTAAAACTTGTCAGTGAACACTGGAATTACAGTAACATAATAATTCTCCCTAAAGCCTAGAAAACTATTAGAAAGATCCTAGAAAGCAATAGAAAGGAGAAATACAAGTAAAGGAAGGTTGGATTCTAACAATGAGTTTGTGACTATAACTTCACTTGAGGACTCCATAAACCAAAAGCACCCATTGGCAATTTCACTACACTTCACTAAGGCTCTATTTGTTTGGTAGGGTGTAAAACATTTTCCGGGAAAACGGTTTTCCTCTATTTTCAATTTTACATTGTTTGGTTTGAGGTGTGTAAAACCATTTTCCCTAGAGTAAAGTTGCTCTCCCAATGATGGAAAACCATTTCCCCTTCAAAATGAAGGGAAAACAGTTTTCCTTCCTTTTCCTTATATGTCTTATACACTCCTCTCACTACCTGTTTACTTTCTTTTTCTTTTTCCTTTTCGATTTTCTAACATGGAACCAAACAACGGAAAACAAATTTTGGAATTGTGTCTTCCATTGCAAATTGTTTCCATGAAAACCATTTTACACTGAAAATGTCTTACACGGTTACACCCAACCAAATAGAGCCTTAAAACACCAATCACTTTCCTTTTCCTAGCTCCCAACCCCCACCCGCTGCAAAAAGAAGGGGGAAAAACACTTTCTCTGCCATTTGGGAAACTAAGGATTTATTGACCATAACTTCACCTAAAGACTCCATAAACCAAAAGCACCTATTGCCAATCCGACCAAGCATATTTCATACTTCACTGACCACTAATGCTATTTAGCTGGTCAAACCAACTAAGTGACTAACACATTTAAAATTTACCAAATGCGTAGTTAATCCAATTAGCTAAGTAGCTAGCTAACACATGACCTGAACAAATTATAACAATATACTAAGATTTTAGATCAGTAAGGCCCTTACTTCAATTTGATAATAGAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

mRNA sequence

ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

Coding sequence (CDS)

ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

Protein sequence

MDFAHFREELMFSLPSSATLEDVETMFASRLTPSLVDMNSVRYCFSTFFPASSGGPKSSTLLYLDDEGEDIFTDIFSSRTKGSLKNMSAPAPLT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25111Spo25111gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25111.1Spo25111.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25111.1.CDS.2Spo25111.1.CDS.2CDS
Spo25111.1.CDS.1Spo25111.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25111.1.exon.2Spo25111.1.exon.2exon
Spo25111.1.exon.1Spo25111.1.exon.1exon


Homology
[Close]
BLAST of Spo25111.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AI30_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.200e-25
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1 

		  

Query: 8   EELMFSLPSSATLEDVETMFASRLTPSLVDMNSVRYCFSTFFPASSGGPKSSTLLYLDDE 67
           + L  SLPSSAT +D + MF  R TPSLVDMNSV+YC ST   A SGGP+SST+ Y DDE
Sbjct: 84  KNLTKSLPSSATFDDADRMFEVRRTPSLVDMNSVKYCCSTLSAAFSGGPRSSTVTYFDDE 143

Query: 68  GEDIFTDIFSSRTKGSLKNMSAPAPLT 95
           G+DI TD+FSSRTKGSLKNMSAPAP T
Sbjct: 144 GDDISTDMFSSRTKGSLKNMSAPAPRT 170
The following BLAST results are available for this feature:
BLAST of Spo25111.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25111.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0E0AI30_9ORYZ6.2e-2570.1Uncharacterized protein OS=Ory... [more]
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BLAST of Spo25111.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25111.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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