Spo25145.1 (mRNA) | SpinachBase

Overview


Name	Spo25145.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Beta-1,4-xylosidase
Location	chr2 : 35346897 .. 35347319 (+)
Sequence length	423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACTGATACCATTTATTGTCCGTGCGATGAAGAAGCAAAACATACACAAGCATAGCTTCCGATGCGTTTCAGATGGGTCGAGACGAAGCTATCAGTTGTTAGGAAGTGCCGGTGACTCATTCAACGGGTCGTCTCATCGGCGTACGCAGTCGGAGTTTCAAGCCCCTATTGGACTGCAGGATTTCCAGCAGCCTCAAGTAGTTGATCACTTTATACGTTCACGTAGTATCAACACTAACAATATCAATAATGATGCTGCTACCAAAGGGACAAGGCAAATACATCAAAATCATGCTCATGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCTTATAATTATAATTTTGATTATGGTGATAAGCATGCTTCTAACACGATCAACAAGTTTCATCACTATTAG

mRNA sequence

ATGGAGGGACTGATACCATTTATTGTCCGTGCGATGAAGAAGCAAAACATACACAAGCATAGCTTCCGATGCGTTTCAGATGGGTCGAGACGAAGCTATCAGTTGTTAGGAAGTGCCGGTGACTCATTCAACGGGTCGTCTCATCGGCGTACGCAGTCGGAGTTTCAAGCCCCTATTGGACTGCAGGATTTCCAGCAGCCTCAAGTAGTTGATCACTTTATACGTTCACGTAGTATCAACACTAACAATATCAATAATGATGCTGCTACCAAAGGGACAAGGCAAATACATCAAAATCATGCTCATGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCTTATAATTATAATTTTGATTATGGTGATAAGCATGCTTCTAACACGATCAACAAGTTTCATCACTATTAG

Coding sequence (CDS)

ATGGAGGGACTGATACCATTTATTGTCCGTGCGATGAAGAAGCAAAACATACACAAGCATAGCTTCCGATGCGTTTCAGATGGGTCGAGACGAAGCTATCAGTTGTTAGGAAGTGCCGGTGACTCATTCAACGGGTCGTCTCATCGGCGTACGCAGTCGGAGTTTCAAGCCCCTATTGGACTGCAGGATTTCCAGCAGCCTCAAGTAGTTGATCACTTTATACGTTCACGTAGTATCAACACTAACAATATCAATAATGATGCTGCTACCAAAGGGACAAGGCAAATACATCAAAATCATGCTCATGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCTTATAATTATAATTTTGATTATGGTGATAAGCATGCTTCTAACACGATCAACAAGTTTCATCACTATTAG

Protein sequence

MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIGLQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNHAHAPAPAPAPAPAPAPAAYNYNFDYGDKHASNTINKFHHY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25145	Spo25145	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25145.1	Spo25145.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25145.1.exon.1	Spo25145.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25145.1.CDS.1	Spo25145.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo25145.1 vs. NCBI nr
Match: gi|902147038|gb|KNA05125.1| (hypothetical protein SOVF_193290 [Spinacia oleracea])

HSP 1 Score: 270.8 bits (691), Expect = 1.400e-69
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 1


		  
Query: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
           MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG
Sbjct: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60

Query: 61  LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNHAHAPAPAPAPAPAPAPAAYN 120
           LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNH    APAPAPAPAPAPAAYN
Sbjct: 61  LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNH----APAPAPAPAPAPAAYN 120

Query: 121 YNFDYGDKHASNTINKFHHY 141
           YNFDYGDKHASNTINKFHHY
Sbjct: 121 YNFDYGDKHASNTINKFHHY 136

[Close]

BLAST of Spo25145.1 vs. NCBI nr
Match: gi|731352067|ref|XP_010687346.1| (PREDICTED: uncharacterized protein LOC104901457 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 155.2 bits (391), Expect = 8.300e-35
Identity = 87/141 (61.70%), Postives = 101/141 (71.63%), Query Frame = 1


		  
Query: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAG-DSFNGSSHRRTQSEFQAPI 60
           MEGLIP++VRA+K+QN+H  SFRC+SDGSRRSY LLG+AG DS NGSSHRRTQSEFQAP 
Sbjct: 1   MEGLIPYLVRAIKRQNLHNQSFRCLSDGSRRSYHLLGNAGGDSVNGSSHRRTQSEFQAPT 60

Query: 61  GLQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNHAHAPAPAPAPAPAPAPAAY 120
            +    QP+V D F+RSRS+ +NNIN     KG RQ H N               APAAY
Sbjct: 61  AMD--LQPEV-DQFVRSRSMKSNNINM-MDNKGLRQTHHN---------------APAAY 120

Query: 121 NYNFDYGDKHASNTINKFHHY 141
           NYN+DYGD+  SNTINKFH Y
Sbjct: 121 NYNYDYGDRLGSNTINKFHQY 122

[Close]

BLAST of Spo25145.1 vs. NCBI nr
Match: gi|359475444|ref|XP_003631687.1| (PREDICTED: uncharacterized protein LOC100854891 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 3.400e-12
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIPF+  A+K +  H   +RC+S+GS R Y+LL    DS +GSSHRRT+SEFQAP  
Sbjct: 1  MEGLIPFLFNAIKSKKAHS-GYRCLSEGSSRGYRLLAGP-DSSHGSSHRRTRSEFQAP-- 60

Query: 61 LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQI 97
            DF   Q    F+RS S+N +++    A +G+RQI
Sbjct: 61 KYDFTDRQPSLGFVRSLSVNKDSLFAHTAAEGSRQI 92

[Close]

BLAST of Spo25145.1 vs. NCBI nr
Match: gi|970000015|ref|XP_015085950.1| (PREDICTED: uncharacterized protein LOC107029134 [Solanum pennellii])

HSP 1 Score: 78.6 bits (192), Expect = 9.800e-12
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIPF++ AMKKQ  H +SFR +SD S RSY LL  A DS +GSSHRRT+SEFQ P+ 
Sbjct: 1  MEGLIPFLLHAMKKQRPHHNSFRSLSDTSNRSYHLLVGA-DSIDGSSHRRTRSEFQPPVT 60

Query: 61 LQDF 65
            DF
Sbjct: 61 TVDF 63

[Close]

BLAST of Spo25145.1 vs. NCBI nr
Match: gi|723664977|ref|XP_010315179.1| (PREDICTED: uncharacterized protein LOC104645408 [Solanum lycopersicum])

HSP 1 Score: 78.6 bits (192), Expect = 9.800e-12
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIPF++ AMKKQ  H +SFR +SD S RSY LL  A DS +GSSHRRT+SEFQ P+ 
Sbjct: 1  MEGLIPFLLHAMKKQRPHHNSFRSLSDTSNRSYHLLVGA-DSIDGSSHRRTRSEFQPPVT 60

Query: 61 LQDF 65
            DF
Sbjct: 61 TVDF 63

[Close]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD12_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193290 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.400e-70
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 1


		  
Query: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
           MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG
Sbjct: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60

Query: 61  LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNHAHAPAPAPAPAPAPAPAAYN 120
           LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNH    APAPAPAPAPAPAAYN
Sbjct: 61  LQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNH----APAPAPAPAPAPAAYN 120

Query: 121 YNFDYGDKHASNTINKFHHY 141
           YNFDYGDKHASNTINKFHHY
Sbjct: 121 YNFDYGDKHASNTINKFHHY 136

[Close]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BV59_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189570 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.800e-35
Identity = 87/141 (61.70%), Postives = 101/141 (71.63%), Query Frame = 1


		  
Query: 1   MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAG-DSFNGSSHRRTQSEFQAPI 60
           MEGLIP++VRA+K+QN+H  SFRC+SDGSRRSY LLG+AG DS NGSSHRRTQSEFQAP 
Sbjct: 1   MEGLIPYLVRAIKRQNLHNQSFRCLSDGSRRSYHLLGNAGGDSVNGSSHRRTQSEFQAPT 60

Query: 61  GLQDFQQPQVVDHFIRSRSINTNNINNDAATKGTRQIHQNHAHAPAPAPAPAPAPAPAAY 120
            +    QP+V D F+RSRS+ +NNIN     KG RQ H N               APAAY
Sbjct: 61  AMD--LQPEV-DQFVRSRSMKSNNINM-MDNKGLRQTHHN---------------APAAY 120

Query: 121 NYNFDYGDKHASNTINKFHHY 141
           NYN+DYGD+  SNTINKFH Y
Sbjct: 121 NYNYDYGDRLGSNTINKFHQY 122

[Close]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Match: K4B2S7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.000e-12
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIPF++ AMKK   H+++FRC+SD S RSY +L  A +S  GSSHRRT+SEFQ P+ 
Sbjct: 1  MEGLIPFLLHAMKKHKPHQNTFRCLSDTSNRSYHMLIRA-ESMEGSSHRRTRSEFQPPVT 60

Query: 61 LQDF-QQPQVVDHFIRSRSINTNNINNDAAT 91
            DF   PQ      R+ S+ +N   NDAAT
Sbjct: 61 TVDFLDLPQNRTFNNRASSLFSN--QNDAAT 88

[Close]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Match: K4B2S6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.900e-12
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIPF++ AMKKQ  H +SFR +SD S RSY LL  A DS +GSSHRRT+SEFQ P+ 
Sbjct: 1  MEGLIPFLLHAMKKQRPHHNSFRSLSDTSNRSYHLLVGA-DSIDGSSHRRTRSEFQPPVT 60

Query: 61 LQDF 65
            DF
Sbjct: 61 TVDF 63

[Close]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Match: B9SNE4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175580 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.600e-11
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHSFRCVSDGSRRSYQLLGSAGDSFNGSSHRRTQSEFQAPIG 60
          MEGLIP+I+ A+KKQ  H+ +++  S+GS RSY LL  +GDS NGSSHRRT+SEFQ P  
Sbjct: 1  MEGLIPYILHAIKKQRPHR-TYKSFSEGSSRSYHLLIGSGDSINGSSHRRTRSEFQPP-A 60

Query: 61 LQDFQQPQVVDHFIRSRSINTNNINN 87
          ++  +Q   ++ ++RS S+   ++N+
Sbjct: 61 MELLEQRSALE-YVRSSSLRKRSVNS 83

[Close]

BLAST of Spo25145.1 vs. TAIR (Arabidopsis)
Match: AT3G19615.1 (unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-7
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1


		  
Query: 1  MEGLIPFIVRAMKKQNIHKHS-FRCVSDGSRRSYQ--LLGSAGDS-FNGSSHRRTQSEFQ 60
          MEGLIP+++ A+KK +   H  +R +S GS RSY+  ++G  G S   GSSHRRT+S++ 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 APIGLQDFQQPQVVDHFIRSRSINTNNINNDAATK 92
            + +  F Q        RS       +N D++++
Sbjct: 61 PHVIMDKFDQ--------RSSGFGQEFVNKDSSSQ 87

The following BLAST results are available for this feature:

BLAST of Spo25145.1 vs. NCBI nr
BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
BLAST of Spo25145.1 vs. ExPASy Swiss-Prot
BLAST of Spo25145.1 vs. TAIR (Arabidopsis)

BLAST of Spo25145.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902147038\|gb\|KNA05125.1\|	1.4e-69	97.1	hypothetical protein SOVF_1932...	[more]
gi\|731352067\|ref\|XP_010687346.1\|	8.3e-35	61.7	PREDICTED: uncharacterized pro...	[more]
gi\|359475444\|ref\|XP_003631687.1\|	3.4e-12	48.9	PREDICTED: uncharacterized pro...	[more]
gi\|970000015\|ref\|XP_015085950.1\|	9.8e-12	64.0	PREDICTED: uncharacterized pro...	[more]
gi\|723664977\|ref\|XP_010315179.1\|	9.8e-12	64.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo25145.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QD12_SPIOL	9.4e-70	97.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8BV59_BETVU	5.8e-35	61.7	Uncharacterized protein OS=Bet...	[more]
K4B2S7_SOLLC	4.0e-12	52.7	Uncharacterized protein OS=Sol...	[more]
K4B2S6_SOLLC	6.9e-12	64.0	Uncharacterized protein OS=Sol...	[more]
B9SNE4_RICCO	2.6e-11	47.6	Putative uncharacterized prote...	[more]

BLAST of Spo25145.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo25145.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G19615.1	1.6e-7	35.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	FAMILY NOT NAMED	coord: 2..113 score: 7.6