Spo25159.1 (mRNA)

Overview
NameSpo25159.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 23288230 .. 23291354 (+)
Sequence length711
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACCCTTGAAAAAAAACTAATTTATATTGATCAAATTTATTTTCATTTCAACCCTAACTACTCTGTCACTCTCATGCTCTTCCTCTCACCGGAATGCCGGCCAACGTTAGCGAATTCAGATTAAATTTTTGCTCCGTACTGTTTTTCGTCACCGTCTCTCCTTCCACGTGGTTCCCGAAACAAATAAAGAATTTGCAGATCCTCCCCTTCGATTTTGTGTTCTATTATGACGAAGAAGAAGTGAGTTTAATTTGATTTCAATTCATATGATTTTTTTTTTGGTGTACGATTTCGATTCGTATGATGATACTATAAACAATCTGTTTCAGTAATTCCAAAAGTTTCTCCTTTTGTATTTTTGTAATTACCCTTTTCTGTTTTTCGATCTATGATTTGATTTTGCTTTCTATTTTCCAATTGGATATGCTGTCATATTGAAAATTTATTTTCTGGGGCGATCATTAAAATGTATTTTTCTTGCTCTATTTGATGGTATACTTTTGCATTCATGAAATTCATATTTGAATATGTCAGTTTTTTATTTAGTTTGATCTTTTAAGCAGTGCATTTGATTGAATATGTAGGATTAAGAGGATTTTGATTCGACTTATGCCATTTGTGTAATAGGTTTTAGTGTTAGCGGACTCAGAATTCACATGGTGATTTTTTTTATGAGGAATTTGCTGAAGTTGTTGGCACCAAAATTCTTATTCCTTCCTCTTCTTTTTTGTTTCCTATTTACCTCATTGTAAACCCATAAAAATCCATTTTTGCTTTGGCCACTTTCATTGTCGTTATGGTAGTGGTGATAATCGATAACCTTCCCCTTACCCTTGTCTTTGATGGTTTTGTGAAGCAATATCCAGGAAAGGTTTAAATAACGCAAATTACTATCAAAATTTGTCATGTTGTTATGATGCCTGAATTTTTTAATTAATTAGCAAAGACTAGTGAAAAAAATTATTTTCCTGATTAATAACTCATTAACTTGGGATGTATTGTGATTGTTATTGGAACATGTCATTAGTGGGAAACTGAGCTCATTGCCACACTTGAAAAATCCCTGAGGTTTAAGGATGGTTATTATCTCCTCTATCACCTCACTAACGAGTACATTGATTCAGCTATTCAACATGTCCTTAGAACGTACTTCTTATGTGTCCCGCTTCTTGAAATTTTATCTTGTTCGTTGGTGTCTTGTTGTTGGTGGTCTCTAGTCTTATTGAGTTTTTTGGGTTGTTTGAGGGTACAATTATGGTATTTAAATTTTGAGACATGAAGATTACTCTTTGCTGACTCTATCATAGTGTTGCGTTTTCCAAGTATGTGTCACTCCTATGTTCCCTGCAACCTTCTTCAGTAGAGGTTTTAGTTTTTGGATATGCAAGTATGCAATTACACTCTTTACTTGAATCTTGTATGCCTTTTCCCTTTGTTATAACTTATGTTTGGAATTTTTTTGTTAATTTATGCAACTCCTCGTTTCCTATGATGTTTTGCTACTTTTTTTTTTATCTTCTAATGGCTTGCTTTTAGTTTCATGCTTTTTGTTGGCTCTATGGCAATCAGTTATTTCTCCTCGAATGATTCTGTAATTATATGTCATTCAGACAAATAGCAAGGGAAATCTATTTTGTAAGATTATGGGCTATGTATTTGCTTATTGTTGTGTTTGTAGAGGTCCTTACAATAAAGGTCATACTGTTGAGACAATGAGTAGAGGTGATTGAAATAATGCAGTGAGATAAGAGTGATGGTGGTGTTTCTAATCCCTATATTTTTGTATTTGTGATTTCCAACTTGCAACATGTTCCATAAAATTCAAATGTACATATTGATCTTGAGCAGAATTGTGATAATTTTCTTTCGAAAGAGAGAGAATTCATACTATCCTTTTGAGTGATAAGCCTCGTGTAGATGTGGCATGATGAATCTGGAAAAGAATGGTTATTATTCAGTTCAGTCCAGTTATTGGACGATTTTTTACACTTGTGGGAATGAGGAGTCCTCTAGTTAAACTGATTGGAAGTAGTAAGGAATGGTCTTCCAAGGACTAAGGATTTTTTCATTTTGGAAAACATGCCATGAAGCTATTCCAGCAACACAAGGGGAATAGCTATTTTATGGCCTTTGTGGGGTGTTATTAAAGGAGCAAATTGTTTCCCATGCTTTATTGGAATTTCATATTGCAAGGATTATATGGGATGGGAGCGAGTTAACGGAGCCAGTCTTAATCAGGTGCAGCCGTGTAGGAGCTTTTTGTATTGGGTCATTGGTGTTTTTAAAAATTTAAGTATGGAATATAAAAGGGTGATGAGTTGGATGGCAAAAGAGGTAATACTTGTTTGATTAAGGATGTTTCTTTTATAAATTAGGGTCTTATAGAAGAGGCTCTTAAAAAGCTCCTCCTTGCTGGAAGTTTAATATTCTGCCTACCCTATTTTCTTGTCTCACTCAAATAATCTCCTTAATTTTGTATTGCACTCCGTATGTTATAAGTATTTTACATAACTTTTTGACAAGGTGTACAAATAAAAGTTATCCACTCCCCAAGGCCATTTTAGCCATCCTATAAAATTTTCTCTATAAACAAGAGAAATGTTAGTAGTAAAGCAATGAAGATTGCTAATACAGTTCCACATTTTCTATATCAGATTCATGCAGTTAGTACGGAGTCCTTCCCTGCATCTGAAAGAGCTTCCAGAATTCTTTGTTCGGGGTGGTAATACAGAAATGAAGCCATTTTTTTCTTCTCGCCTCACTGAGCGCCTGGTCCGTGGCCATGAAGATGTCATGGTTTCTGCTGCTGCTGTAAATACTGTCATTATAGTTTTTAGTACACCCTAAATGAATTTTAGGTGCTAACAATTGTATGAAGTATAAAGTAGAGATTGATGATGTTTAGTACTCCCATAATGTATTTTAGGTGCAATCAATTCTACATGGTTTCGTGAAAAGGTATTTTTTGTACTACAACTAGATGTGGATTTTTATTACTCCTTAAATGTATTTTGGGCATTACGTAGTGTAACTTGTACTCCATGTATAGAACTTTATCATTGTTTAGTACTCCCTAAATGTCTAAATGCATATGGGAATTCCCAGCACTTTATTTAGACATCCG

mRNA sequence

ATACCCTTGAAAAAAAACTAATTTATATTGATCAAATTTATTTTCATTTCAACCCTAACTACTCTGTCACTCTCATGCTCTTCCTCTCACCGGAATGCCGGCCAACGTTAGCGAATTCAGATTAAATTTTTGCTCCGTACTGTTTTTCGTCACCGTCTCTCCTTCCACGTGGTTCCCGAAACAAATAAAGAATTTGCAGATCCTCCCCTTCGATTTTGTGTTCTATTATGACGAAGAAGAAATTCATGCAGTTAGTACGGAGTCCTTCCCTGCATCTGAAAGAGCTTCCAGAATTCTTTGTTCGGGGTGGTAATACAGAAATGAAGCCATTTTTTTCTTCTCGCCTCACTGAGCGCCTGGTCCGTGGCCATGAAGATGTCATGGTTTCTGCTGCTGCTGTAAATACTGTCATTATAGTTTTTAGTACACCCTAAATGAATTTTAGGTGCTAACAATTGTATGAAGTATAAAGTAGAGATTGATGATGTTTAGTACTCCCATAATGTATTTTAGGTGCAATCAATTCTACATGGTTTCGTGAAAAGGTATTTTTTGTACTACAACTAGATGTGGATTTTTATTACTCCTTAAATGTATTTTGGGCATTACGTAGTGTAACTTGTACTCCATGTATAGAACTTTATCATTGTTTAGTACTCCCTAAATGTCTAAATGCATATGGGAATTCCCAGCACTTTATTTAGACATCCG

Coding sequence (CDS)

ATGACGAAGAAGAAATTCATGCAGTTAGTACGGAGTCCTTCCCTGCATCTGAAAGAGCTTCCAGAATTCTTTGTTCGGGGTGGTAATACAGAAATGAAGCCATTTTTTTCTTCTCGCCTCACTGAGCGCCTGGTCCGTGGCCATGAAGATGTCATGGTTTCTGCTGCTGCTGTAAATACTGTCATTATAGTTTTTAGTACACCCTAA

Protein sequence

MTKKKFMQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAAVNTVIIVFSTP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25159Spo25159gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25159.1Spo25159.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25159.1.exon.1Spo25159.1.exon.1exon
Spo25159.1.exon.2Spo25159.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25159.1.utr5p.1Spo25159.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25159.1.CDS.1Spo25159.1.CDS.1CDS
Spo25159.1.CDS.2Spo25159.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25159.1.utr3p.1Spo25159.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25159.1 vs. NCBI nr
Match: gi|902102937|gb|KNA03585.1| (hypothetical protein SOVF_207700, partial [Spinacia oleracea])

HSP 1 Score: 103.6 bits (257), Expect = 1.400e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

		  

Query: 7  MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA 58
          MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA
Sbjct: 1  MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA 51
[Close]
BLAST of Spo25159.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8J1_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_207700 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.700e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

		  

Query: 7  MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA 58
          MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA
Sbjct: 1  MQLVRSPSLHLKELPEFFVRGGNTEMKPFFSSRLTERLVRGHEDVMVSAAA 51
The following BLAST results are available for this feature:
BLAST of Spo25159.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902102937|gb|KNA03585.1|1.4e-19100.hypothetical protein SOVF_2077... [more]
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BLAST of Spo25159.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q8J1_SPIOL9.7e-20100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo25159.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25159.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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