Spo25185.1 (mRNA) | SpinachBase

Overview


Name	Spo25185.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC03g00880D protein
Location	Super_scaffold_70 : 1893961 .. 1894329 (-)
Sequence length	369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCGACCTGCATATCAAGCTCTTCCGACTCCCGGTTTTCGAAACCGATGGATCTTGGTGGTGGTGGTGGTGGTGTAAGGGTGGTCGACAGCAAATCATGCCGGCAATTATACTTAAGAACTGCCTACACGTTTTCACGGCCGGATGAGGAGGAGGAGGAGGATGATGGGAATATGAAGAAGGCTAAGAAGTGCTTGGGTAGGGTTAGAAACAGAGTTTATAGAAGAGATGATCATCATAACAATAATAAGGGTAGTATGGTAATGTTTAGAAAGGTTAAGGAATTCTCTTGTGCTTCTCTCTTGGCTATGATTCGTAGGATGCTTGCTTGTACTGCAAAAGTTGATGCTGCTCACCATTAA

mRNA sequence

ATGTCCTCCTCGACCTGCATATCAAGCTCTTCCGACTCCCGGTTTTCGAAACCGATGGATCTTGGTGGTGGTGGTGGTGGTGTAAGGGTGGTCGACAGCAAATCATGCCGGCAATTATACTTAAGAACTGCCTACACGTTTTCACGGCCGGATGAGGAGGAGGAGGAGGATGATGGGAATATGAAGAAGGCTAAGAAGTGCTTGGGTAGGGTTAGAAACAGAGTTTATAGAAGAGATGATCATCATAACAATAATAAGGGTAGTATGGTAATGTTTAGAAAGGTTAAGGAATTCTCTTGTGCTTCTCTCTTGGCTATGATTCGTAGGATGCTTGCTTGTACTGCAAAAGTTGATGCTGCTCACCATTAA

Coding sequence (CDS)

ATGTCCTCCTCGACCTGCATATCAAGCTCTTCCGACTCCCGGTTTTCGAAACCGATGGATCTTGGTGGTGGTGGTGGTGGTGTAAGGGTGGTCGACAGCAAATCATGCCGGCAATTATACTTAAGAACTGCCTACACGTTTTCACGGCCGGATGAGGAGGAGGAGGAGGATGATGGGAATATGAAGAAGGCTAAGAAGTGCTTGGGTAGGGTTAGAAACAGAGTTTATAGAAGAGATGATCATCATAACAATAATAAGGGTAGTATGGTAATGTTTAGAAAGGTTAAGGAATTCTCTTGTGCTTCTCTCTTGGCTATGATTCGTAGGATGCTTGCTTGTACTGCAAAAGTTGATGCTGCTCACCATTAA

Protein sequence

MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAAHH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25185	Spo25185	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25185.1	Spo25185.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25185.1.CDS.1	Spo25185.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25185.1.exon.1	Spo25185.1.exon.1	exon

Homology

[Close]

BLAST of Spo25185.1 vs. NCBI nr
Match: gi|902231363|gb|KNA22240.1| (hypothetical protein SOVF_035880 [Spinacia oleracea])

HSP 1 Score: 244.2 bits (622), Expect = 1.200e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN 60
           MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN
Sbjct: 1   MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN 60

Query: 61  MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA 120
           MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA
Sbjct: 61  MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA 120

Query: 121 HH 123
           HH
Sbjct: 121 HH 122

[Close]

BLAST of Spo25185.1 vs. NCBI nr
Match: gi|731349793|ref|XP_010686179.1| (PREDICTED: uncharacterized protein LOC104900461 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 149.1 bits (375), Expect = 5.200e-33
Identity = 88/141 (62.41%), Postives = 103/141 (73.05%), Query Frame = 1


		  
Query: 1   MSSSTCISSS-------SDSRFSKPMDLGG-GGGGVRVVDSKSCRQLYLRTAYTFSRPDE 60
           MSSSTCISSS       S++RFS+P+D  G GGGGVRVVDSKSCRQ+YLRTAYTFSR   
Sbjct: 1   MSSSTCISSSNSNINPVSEARFSRPVDTDGCGGGGVRVVDSKSCRQMYLRTAYTFSR--- 60

Query: 61  EEEEDDGNMKKAKKCLGRVRNRV---YRRDD--------HHNNNKGSMVMFRKVKEFSCA 120
            E++ D  M+KAKKCLG+V++RV   Y+RD         +   N  SMV+F KVKEFSCA
Sbjct: 61  REDQTDNGMEKAKKCLGKVKDRVTLVYKRDHDKSFTIMRNSTTNNKSMVIFSKVKEFSCA 120

Query: 121 SLLAMIRRMLACTAKVDAAHH 123
           S L+MIRRMLACTAKVD A H
Sbjct: 121 SFLSMIRRMLACTAKVDVAEH 138

[Close]

BLAST of Spo25185.1 vs. NCBI nr
Match: gi|661889952|emb|CDP06672.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.3 bits (199), Expect = 1.300e-12
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 1


		  
Query: 11  SDSRFSKPMDLGGGGGGVR---------VVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNM 70
           SD+ F K     GG G +          VVDS SCRQLYLR+AYTFSR       ++G  
Sbjct: 32  SDAEFVKSTGNLGGKGRLHNNYLHRSGAVVDSASCRQLYLRSAYTFSR-------EEGVQ 91

Query: 71  KKAKKCLGRVRNRVY--------RRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLAC 123
           ++ KKC GRV+ +V         R        +   VM R+VK+FSC +L  + +R+L+C
Sbjct: 92  ERTKKCFGRVKEKVAIARTATTSRFQPRRRKTRTRFVMVRRVKDFSCGALRTIFQRLLSC 151

[Close]

BLAST of Spo25185.1 vs. NCBI nr
Match: gi|565343878|ref|XP_006339051.1| (PREDICTED: uncharacterized protein LOC102602765 [Solanum tuberosum])

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


		  
Query: 29  RVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCLGRVRNRVYR---RDDHHNNN 88
           RVVDS SCRQLYLR+AYTFSR +   +       K KKCLG+VR RV     +       
Sbjct: 25  RVVDSVSCRQLYLRSAYTFSRKETVPQ-------KTKKCLGKVRERVANGKGKIGWRRRR 84

Query: 89  KGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAAHH 123
             S    R+VK+  CA+L  + R++LACTA VD   H
Sbjct: 85  VRSFTAVRRVKKICCAALCGVFRKLLACTATVDVVDH 114

[Close]

BLAST of Spo25185.1 vs. NCBI nr
Match: gi|802614805|ref|XP_012074847.1| (PREDICTED: uncharacterized protein LOC105636235 [Jatropha curcas])

HSP 1 Score: 76.6 bits (187), Expect = 3.300e-11
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1


		  
Query: 11  SDSRFSKPMDLGGGG--GGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCL 70
           SD+ F K +   G G  G  RVVDS SCRQ+YLR+ YTFSR +   E       K KKC 
Sbjct: 33  SDAEFIKTVRRVGQGLHGQPRVVDSISCRQMYLRS-YTFSRKETVPE-------KTKKCF 92

Query: 71  GRVRNRV--YRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAAH 122
           GRV+ +V  + +       K   ++FRKVKEFSC +L  +  ++L+C A VD A+
Sbjct: 93  GRVKEKVTNHGKKRKEKGKKRKCLVFRKVKEFSCGALFRIFHKLLSCGASVDVAN 139

[Close]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRS2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035880 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.200e-62
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN 60
           MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN
Sbjct: 1   MSSSTCISSSSDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGN 60

Query: 61  MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA 120
           MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA
Sbjct: 61  MKKAKKCLGRVRNRVYRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAA 120

Query: 121 HH 123
           HH
Sbjct: 121 HH 122

[Close]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUT8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174700 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.600e-33
Identity = 88/141 (62.41%), Postives = 103/141 (73.05%), Query Frame = 1


		  
Query: 1   MSSSTCISSS-------SDSRFSKPMDLGG-GGGGVRVVDSKSCRQLYLRTAYTFSRPDE 60
           MSSSTCISSS       S++RFS+P+D  G GGGGVRVVDSKSCRQ+YLRTAYTFSR   
Sbjct: 1   MSSSTCISSSNSNINPVSEARFSRPVDTDGCGGGGVRVVDSKSCRQMYLRTAYTFSR--- 60

Query: 61  EEEEDDGNMKKAKKCLGRVRNRV---YRRDD--------HHNNNKGSMVMFRKVKEFSCA 120
            E++ D  M+KAKKCLG+V++RV   Y+RD         +   N  SMV+F KVKEFSCA
Sbjct: 61  REDQTDNGMEKAKKCLGKVKDRVTLVYKRDHDKSFTIMRNSTTNNKSMVIFSKVKEFSCA 120

Query: 121 SLLAMIRRMLACTAKVDAAHH 123
           S L+MIRRMLACTAKVD A H
Sbjct: 121 SFLSMIRRMLACTAKVDVAEH 138

[Close]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Match: A0A068UEK4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023600001 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.200e-13
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 1


		  
Query: 11  SDSRFSKPMDLGGGGGGVR---------VVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNM 70
           SD+ F K     GG G +          VVDS SCRQLYLR+AYTFSR       ++G  
Sbjct: 32  SDAEFVKSTGNLGGKGRLHNNYLHRSGAVVDSASCRQLYLRSAYTFSR-------EEGVQ 91

Query: 71  KKAKKCLGRVRNRVY--------RRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLAC 123
           ++ KKC GRV+ +V         R        +   VM R+VK+FSC +L  + +R+L+C
Sbjct: 92  ERTKKCFGRVKEKVAIARTATTSRFQPRRRKTRTRFVMVRRVKDFSCGALRTIFQRLLSC 151

[Close]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Match: M1ARK7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011054 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-11
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


		  
Query: 29  RVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCLGRVRNRVYR---RDDHHNNN 88
           RVVDS SCRQLYLR+AYTFSR +   +       K KKCLG+VR RV     +       
Sbjct: 25  RVVDSVSCRQLYLRSAYTFSRKETVPQ-------KTKKCLGKVRERVANGKGKIGWRRRR 84

Query: 89  KGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAAHH 123
             S    R+VK+  CA+L  + R++LACTA VD   H
Sbjct: 85  VRSFTAVRRVKKICCAALCGVFRKLLACTATVDVVDH 114

[Close]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Match: A0A067KUN5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08997 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-11
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1


		  
Query: 11  SDSRFSKPMDLGGGG--GGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCL 70
           SD+ F K +   G G  G  RVVDS SCRQ+YLR+ YTFSR +   E       K KKC 
Sbjct: 33  SDAEFIKTVRRVGQGLHGQPRVVDSISCRQMYLRS-YTFSRKETVPE-------KTKKCF 92

Query: 71  GRVRNRV--YRRDDHHNNNKGSMVMFRKVKEFSCASLLAMIRRMLACTAKVDAAH 122
           GRV+ +V  + +       K   ++FRKVKEFSC +L  +  ++L+C A VD A+
Sbjct: 93  GRVKEKVTNHGKKRKEKGKKRKCLVFRKVKEFSCGALFRIFHKLLSCGASVDVAN 139

[Close]

BLAST of Spo25185.1 vs. TAIR (Arabidopsis)
Match: AT5G02640.1 (unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-11
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 1


		  
Query: 11  SDSRFSKPMDLGGGGGGVRVVDSKSCRQLYLRTAYTFSRPDEEEEEDDGNMKKAKKCLGR 70
           SD+ F + +  GGG    RVVDS SCRQ+YLR +YTFSR D+E + +  +      CLGR
Sbjct: 36  SDAEFVRSVRRGGGLPAARVVDSISCRQMYLR-SYTFSREDDESKSEKVSSGTQTSCLGR 95

Query: 71  VRNRVYRRDDHHNNN--------------KGSMVMFRKVKEFSCASLLAMIRRMLACTAK 119
           V+     R      N              +   V  +  +E +C+ +L + RR+L+C A 
Sbjct: 96  VKGTASSRRKSKEENGIIIVESTKPRRRGEKRRVSRKNKQEQACSVILRIFRRLLSCAAT 155

The following BLAST results are available for this feature:

BLAST of Spo25185.1 vs. NCBI nr
BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
BLAST of Spo25185.1 vs. ExPASy Swiss-Prot
BLAST of Spo25185.1 vs. TAIR (Arabidopsis)

BLAST of Spo25185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231363\|gb\|KNA22240.1\|	1.2e-61	100.	hypothetical protein SOVF_0358...	[more]
gi\|731349793\|ref\|XP_010686179.1\|	5.2e-33	62.4	PREDICTED: uncharacterized pro...	[more]
gi\|661889952\|emb\|CDP06672.1\|	1.3e-12	39.5	unnamed protein product [Coffe...	[more]
gi\|565343878\|ref\|XP_006339051.1\|	2.5e-11	46.3	PREDICTED: uncharacterized pro...	[more]
gi\|802614805\|ref\|XP_012074847.1\|	3.3e-11	43.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo25185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RRS2_SPIOL	8.2e-62	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BUT8_BETVU	3.6e-33	62.4	Uncharacterized protein OS=Bet...	[more]
A0A068UEK4_COFCA	9.2e-13	39.5	Uncharacterized protein OS=Cof...	[more]
M1ARK7_SOLTU	1.7e-11	46.3	Uncharacterized protein OS=Sol...	[more]
A0A067KUN5_JATCU	2.3e-11	43.4	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo25185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo25185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G02640.1	2.0e-11	35.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35304	FAMILY NOT NAMED	coord: 19..122 score: 1.4