Spo25213.1 (mRNA) | SpinachBase

Overview


Name	Spo25213.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DEAD-box ATP-dependent RNA helicase-like protein
Location	SpoScf_01397 : 33538 .. 41134 (-)
Sequence length	522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAGTAATTTTGTTTCGTATGGTATTGTGTTGGCTTATTGCAATTTGTGATTTTGTTCAGAAGGAATGCTTTTTATCTCTGGCTATTCGATGTATTGTGTTGGCTTATTGCAATTTGTGATTTTGTTATGAAGGAATGCTTTTTACTCTCTGGCTATTGGATGACAGAGTTTTTATGAGGAGAATCTTTAGAATACTTGAATTGGACCCTCAAAGTTTATGGATTACCATGTAGACATCTGCAGTTAGGGTGCCTTACTGATTTGAGTTCTTGCTGTTCTTATTTCTGAAGCTAGCTTAACGTAGCCGTTTAGAATATAGACAAATTGGCAATTTGGTTGTTTCCGAATTTGTCACACCATAAACAAAATGAAATGAGTGTTTTTTTTAAATTTTTTTTATTTCTCAATATCTCCAATTAATATAAGTTTGGCGGTGAATTCACAGGGAGAGATTTTCATTCATTCGTATGCATCACCGTTGTTTTTAAGCTGTACTTTTGGGTGCCAATTTTGTTTTGTAAGATTCTATTTCTCTAAAGTGTAGACATAAAGTACCATGATAATTATCATAGATTTTACTTTGAAGTCGAACGATGTTAACAAGGATATGGGCTAAATTGTTCGCGAAAAAAAAGGATATGGGCTAAATTTTTTTTCTTTGAATTTGGTGCAGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGGTATATCAACTACTTTGGTTATTTGGGATTTTCTGGAAACTTTGTGTTTCGTTGATGTTCTTATTAAATGTGTTTGCAGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGGTTTGTTTGTTCCCCTTATCTCTATCTTCTTTCATTTTGCAGATTAATGCTTCATTTTGTTTGTTTTTTTTGTTGGATTTTAATCTGATTTTTATTGTGTTCACTGTTGTTGATTGTGTTTGTTCAACATTTTTGAGATGTAGTTTTATCATTTTAGGGTTTGAAATCATAAGTTTTAATTTTGAAAATAAGTTGTGTGTTCTTGAAATCATGAAGATAGGTAAGCTTGAGTTCTTCCCAAACATCTTTAGCAGGGTCTGATTTATTGGAGTAATGCCATTCAGGTTATCGCATAAGGAATTTAAATTGTTTTGACGACATATATGGTGATCATTTACTTGCCTGCATTTGTGTAGGTAATTTCTTTTCCATGGATACTTTTGAATTTATCTTAGCTCTCAGGTCTCTTTTATATCGACTTCTGCCATAAATTATATTTGTTTGTGTGACTCTTGCAAAAGTTTTTTGTCTGCCTTATATGCACGAGAATTGTAATGTACAAATGATGTGATAGCAGCCCTGGCTGCAGCTTCTGAATTTGACATATAGAGTATCTGCATTAAAAAAATATATATATACAGATTCTTCTCGCTTTTTGATTCGCAGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGTTATGCAACTATCTTTTTTAGAAAATAATTAAGCATGCATTAATGAATTTGATCTCCTCCCAAAACTATCTTTAATGCATTTCTTCTTCTCCACTCGAAAACCACTATAATGTTGCATCGAAGAACCTCAAGAACCATGATCGCGATTCTTTTAATAGGATTGTCTGACCTCTTATCTGTCATTCATTCCTTGGCCTTTATTAGACCATTCAAACTTATCTTCTAAGCTTAGTTCTGGTGGCGGCTTTAAGGATTTCGTGTTGTTTTTTCCATTGAGGGAAAGTGGTGGTGGTGCTGTGTTAGGCTTATCGTTGCTTTGTGATGATGAATTGTTGTGTAATATCAGAAGTTTTTCCTTTGAGGAGCTTCGTTGATCAATGACTTGGTGTAGCGCGAAGAACTTTGCAAGAGAGACATGAGGATTTATGGGTGAAGCAAAGGAACATAGATCTGCGAACATATTTTGTAGTGCATCTCTACTATATAAGCCAGTAATTAGTTTGTTCTTGAAACGTCTTTGCTTGATAATTTGATTATTATATGGGCGTTTGAAATTTGGTTGATTGGTATTGTATGAGACATGGAAATTTGATTTAGTTTAGTGAAGTGAGGTAAAAATTAGATCTTTTGTCGTATAATTTGGTATTTATGAAATTCTTGATTTCTTGGGTATTTTGCAAATTAGTTGAGTGTGCAAGAAGCGGTTGGGGTTTTGAATGATCTTGGAACTGCTGGAAGTGCCTGGAAGTGCCAATGAGGAAGAGCAGAGTTGTTCTAATATCATATCTAGATTGTGAGTGCGAGGAGTTTGACAAAAAGTTCTATTATTTGTTAAACATATTCTTTAGTTTGTAATCATGGAGAAAACCATGTTATTTTAAATCATTATTTGTTAAACATGATAATGAATTCATGATGATTTTGATGATTATTCTGATTATATGGATTTTTTTTCTTAATCATATTTTTTTAATTCATTAACATGCACTTTTTCATTAAATCTTCTCTGTATTTTGTTTTTTTTCCCTAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGGTGGTGGTGGGGTTTGGTTTGAAGGAGATTTTTGATGAAGAATTTTACAAGGATATGGTGGTGGAGTTTGCTGCTAGGAGAGATATGGACATATGGATGAGCTTGCTGTTCTCATTTTTTGGGGATCAAACTGCATACAGGCATATTTATTTATTTGTAGTCTTTAATTATGTTCTTCAGTTGTCTTAAGTACGGAGTATAACTTATATCAATGTATGCACCTGTCTTTATCTAAGAATATGTCTTATTCATGGGAATTTTTGCAGTTGGTAATTGTAATTAGGGAGTGGGGTAGAATCAGAAGAAGAGAGTGTGTGTTGTAACTTGCAGTGCTTTTGTACGACGAGCTTGAGGGAAGTCAAATTTTGTTGTATATGAACATGTTTTTGTGCCTATTATTTTTTTAGGTGATTAAATGTAATATACAATATTTAGTTTTTAAACATCCGCACGCATCGCGTGCATATAAGACTAGTTCTACTGTAAACAAACTAAGAACTTCCTAAGCAGCCAACCACCGAACCATAATCACTGTCATTCCTCAAAAACAATATTATGATTGCAGAATTACATTCTAATTCATTCTCCTCACCGCAATCATAATCACTGCATCTATAACAAAAACAAAAAGAACAAATCATCAATTTCTCAACAAAAATGGAAATAAATTCAATTAATTGGAATAATTGGAGAGAGGAAGAGGAATACATACAATATTCGATAAATCTTGGACGAATTTGTTTTTCCCCATAAACAAACATTCAATCAGAAGCATGAAATTATCAACAATATTGAACAATTAAGATCATTGAACACATAAATTACCTTCAGAAGTAAGAATTTTGAGTCTAATGGAGACTAAAACCAGAGGAGCAAATACAGGAAGTGAGAGAAGAAAGAGGATGAAGATCCTCTGCCATCTTCGAAACTGCTTCATCAATCAATTTAGTCGAATAAATCATCTCTAAAACGTGTTTATGTATACATTTTTGGACAGTTAATAATATGTTTTAGACTTTTGATTTTAATTGACAGAAATGATATTTAAGTTACATAAAGCTAACATCTGTAGACCGTAGAAGTACTTAGCATTAGGATTTAGTAGGACTAGAAGTGAATTGTTTTTCCTTAATTAGTTCTAAATTTAGATAGTTGATGTGATATTGCTTATATTTAGCTCCTTTTTTTAGTCGATTTCGGTCAGGTTTGATTTCGGGTTCGGGTCTTATCGGGTCGGGTTTAAGTCGGTTTGTAGCAGATAATTTCGGGTTCGGGTCTTATAGAGTCGGGTTTAAGTCGGTTTGCAACACAGTTATTTCGGGTTCGGGTCTTAGTTTGGATCGGATAATAATCAGATCAAATAGAATTCAGATCGGGTCACTCTCAGGATCGGGTCACTCTCAGGGACGGGTCAAACTCGGGTCTGATAATTAACCTATACATTTTAAGGATTTTATGTTCTAAAAAATTTTGTTTAACTTATTTTAGAGTTAAAATTTTCAATATTTAGCAATAAATAATTAAAATAGATATATCAATGAAGTTAATATTTGGTCGTGTTATTGATAACTCGGGTAAATCGAGTAGCGGGTTCTCACAGGTCGGGTCAATATCAGGTTTCATCGAGTTACAATCGGTTTCGGGTTGACATCGGGTCGGGTATCAAATCGGGTTCGGGTCATTGTTCGGTCGGGTCAGTTCGATTATCGGTCATTTTCGGGTCGGGTGTCGGGTTTGGGTTCGGGTGTTACAACATCGGGTTAAAATCGGTTATCGATTTTTTCGGGTCGGGTACAGGTCGGATTTCGGGTTACCTGTTTTACCGTAATTTCGGGTCATGGTCGGTTACGGATTCGGTCGGTTCAGGTCGGGTTTTCGGGTCGGGTCAGTTTTTGACAGCTCTAGCTAGAAGACACCCACAACATAAGTACGTACTTCATAGTTCGTGCTTTTGAGCCATCAGGACGGGACTAACTAATATATGCTCGAGAAAAAAACTAGCTAGCACAATCCTATATACGTAGTATAAGTCATGTAGGGTGTTCCATCTTAAAGAAAATGATACCAAGTGAAGTAACACCGGACTATATATTCATGTGGATCACAACTAGGGTTGTCAATCCTTGACTCGGCTCGATAACTTAATTCGAACACGACCTAAAATTATTGAGGAAAACTTAAATTCGACCTAAAGTTATTGATGGAAACCTGAACGTGGCTTGAGACTAAATCTGTATGACCTGAATTCAACCCGACTTGACAAATTTATCATATTTCATAGTAATATCAAATTTTACGCTAGTTTTGATACTTTTAGGCACAACCCAAGTTCAACATGAAACCAAACCCGAATCCATCCCATTGACCTGAATTGCCACCCCTGGACCCTAGTCCCAACTCATATGCGATTTTCCTTAACAAAATATAGTTTTAATGGTTCTATAGAAATGTATGTATGTTGACCCACATGGTTTTGATGATGACAGGCAAACTTAACTAATAAATGTTTAAGTTTCTATGCTAAGAAAACCAGGAGTTCCAGAGCAGGAACAAGAGAAGGCCAAAGCATGTAGACTTGGACAATTAGAGAAACTGATCAAGCAGGCATAAATAAGTTCCTGATGGGAACATGGTTCGAGAAGTTCCAGAGGTGGAACAACCAACATGCGGAGCAGCATGGAACATGAAGACAGGAAATAAGAGTTTATTTTCTAGGATTNTGTTTGAGGGAACAACTATTGGGAACTTGAGTTCGTAGAGGAACTCAAGTAATGGCCAAGTTTCTTATAGGATTGTAACTGAGTTGTTGCCCTATAGTGAATAGAGTTTGAGTTGAAATCCCTAGTGGGTCGAGGTTTTCTTTCCAGTTGGGCCCTGGAAAGTTTCCTCGTAAAATCTCTCTTGCATTGTTTCTCTACTTGCTTATGTTCTTTATAATTCCGCAAAAATTGACTAGCAAGTTCCATATTACAATTCACCCCCCCTCTTGTAGTGTTCCATCCAAATAACAATGTAGGGCAAGGGGATATGTCGTATTATGTGTGTTATAAACTATAATGGCAAAGCGAAGAACATTATGAAACGGAGGGAGTAGAAGCTAGCTGATTCATGTTTTGGTACCCTTTGTAATTTCTTGTAAATCCTAGAAAATAATTTCTTATAACTCTACCAGATCGACCTTTCAAGGATTTATGAAATTGTGGAGTATGATTAATTAAAGGGGGAATAAATAATTTGTTACTTTTTTTAAGGGTAAAAAATTCGTGCATATTAGCTAGTACTCCGTATTATTTAGGACAAGGGGTTGACTCTTTCTAAAATTTATCTATTACTCTATTTGGACTCCCAGCTATCTTTTATTGGTAGTAATTTATCTCTTAATGTATTTGGATTCTTAGCAAACAAATATCTCTTAATAAAAATACATATGGATAAGATACCAACAATATATCAAGCATATTATTTTGATTATTTTGATATTTGCAATAATGAGAATTTACGATCAAAGTTTATAAAAGTTTGATCATAAAAATTAAAGTGTAATCTCAAAAAAAAAAAACAGAGGGAGTATTAGATTGGAAAAGGGGAATTGATAATTTTACTTACCTCAAAGCCAAATTCGTTCAAACGTACCGCCGAAACAACATATACTATGTCCCAACAAATAAAAAAACACCTACGATGTAATATAGTCATTGTATAATGGTAATGGATAACCTATCAGGGACATACAAAGTTACAATATATCAAAGTTGTCAATCGTGTTCTAATTAGAAAACTCAACTAAACACGAGCGATCCATAATTTATAAAGTTATCAAATCTTTAACTCAAGTATAAACTAAAATTTGCATACTCCATAGTTCACAAGCCATTTAAGCTTTTGTACCTTAGCTCAATGTCAACAACTTTTTAATTTTCATTTTCGAATGCAAATGCTCATACATGCATATCGCCCTAAGATAATTTGTACTACTCCCTCCGTCTCTTTTTGTTTTTTACGTTTTCCTTTTTTTAGTGTTTCAAAATGTTCTTTACCTTTCCTTTTATATTATCACATAAATGATTAATATTCTATCAAAATTTGTGTCTAATTATTATTTTAACCGATTAAATTCATTAGATCATTTAATCTCTCACACTTTTCCATTATGACATTAACTTTTTCTCATTTTCCCAATATCAGAATTTTGATAAGAGTGAAAACATTATAAATAAACGTAATTTTTCTCGTTTACATAAAAACTAAAAATAATCTCAATGCACATTAATTAGTCGTTACAACGCGTGCAAAATACCAAACGTAAAAAACAAAAAGAGACGGAGGGAGTACTTTTCAATTGCACCAATTGAAGTAGACCTGACCAAATGGTGGGCCGGGCCGGGTCTAGGCTTAAAATTTTTTAGCCCGCTGTGTCAGGTAGGGCCGGCCAAAATACCGGGATTTTGGGGCCTTTTTCGGGCCTAAAATACTGGGCTTTTCGGATCGGGCCAAATTTATAACTAAAAAGTGTAGTTTTGTGTTTCCCTAACCCGCCCAAAAAGTTTAAAATTTTCAGGCCGGGCCTGAAAATTCCAGGCGGGCCGGGGCGGGCTTGTCTTCATCGGGTCTAAATTGAAGTTTCACGACCCACGTACTACGATGGAGTACTAGTTTGGTAATTTGGTTAGTGTGTGAAAGACTGACTAGTGATTGACTGATAGTAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

mRNA sequence

ATGTGTAGTAATTTTGTTTCGTATGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

Coding sequence (CDS)

ATGTGTAGTAATTTTGTTTCGTATGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

Protein sequence

MCSNFVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSVANDETFRTTHIVASAISSKPYTSYIQKEKLAAVESEGSGMGSAEAAMFLQCFSNLIHRTSYLSVFYHSHFSLQINVQSIP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25213	Spo25213	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25213.1	Spo25213.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25213.1.CDS.6	Spo25213.1.CDS.6	CDS
Spo25213.1.CDS.5	Spo25213.1.CDS.5	CDS
Spo25213.1.CDS.4	Spo25213.1.CDS.4	CDS
Spo25213.1.CDS.3	Spo25213.1.CDS.3	CDS
Spo25213.1.CDS.2	Spo25213.1.CDS.2	CDS
Spo25213.1.CDS.1	Spo25213.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25213.1.exon.6	Spo25213.1.exon.6	exon
Spo25213.1.exon.5	Spo25213.1.exon.5	exon
Spo25213.1.exon.4	Spo25213.1.exon.4	exon
Spo25213.1.exon.3	Spo25213.1.exon.3	exon
Spo25213.1.exon.2	Spo25213.1.exon.2	exon
Spo25213.1.exon.1	Spo25213.1.exon.1	exon

Homology

[Close]

BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902202226|gb|KNA14207.1| (hypothetical protein SOVF_109750 [Spinacia oleracea])

HSP 1 Score: 82.4 bits (202), Expect = 8.400e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++ FEPAMQGRDMIG A TGTGKTLAFGIPI DKITRHNAKNG
Sbjct: 129 FPIQKAVFEPAMQGRDMIGRARTGTGKTLAFGIPILDKITRHNAKNG 175

[Close]

BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902186683|gb|KNA10763.1| (hypothetical protein SOVF_141380 [Spinacia oleracea])

HSP 1 Score: 80.1 bits (196), Expect = 4.200e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1

		  
Query: 49 KNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          +  TMFYS CLLSSKGPLGAIWVA YFFKRL KRQIT TDISSSV
Sbjct: 35 RKSTMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQITDTDISSSV 79

[Close]

BLAST of Spo25213.1 vs. NCBI nr
Match: gi|731332573|ref|XP_010677277.1| (PREDICTED: sister chromatid cohesion 1 protein 2-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1

		  
Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81

[Close]

BLAST of Spo25213.1 vs. NCBI nr
Match: gi|731332571|ref|XP_010677276.1| (PREDICTED: sister chromatid cohesion 1 protein 2-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1

		  
Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81

[Close]

BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902202227|gb|KNA14208.1| (hypothetical protein SOVF_109760 [Spinacia oleracea])

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-11
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++  EPAMQGRDMIG A TGTGKTLAFG+PI DKITRHN KNG
Sbjct: 124 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGMPILDKITRHNEKNG 170

[Close]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5X8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109750 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.900e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++ FEPAMQGRDMIG A TGTGKTLAFGIPI DKITRHNAKNG
Sbjct: 129 FPIQKAVFEPAMQGRDMIGRARTGTGKTLAFGIPILDKITRHNAKNG 175

[Close]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141380 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1

		  
Query: 49 KNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          +  TMFYS CLLSSKGPLGAIWVA YFFKRL KRQIT TDISSSV
Sbjct: 35 RKSTMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQITDTDISSSV 79

[Close]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHW3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.500e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1

		  
Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81

[Close]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CI08_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.500e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1

		  
Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81

[Close]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3X4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109760 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++  EPAMQGRDMIG A TGTGKTLAFG+PI DKITRHN KNG
Sbjct: 124 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGMPILDKITRHNEKNG 170

[Close]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.500e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGT 53
           F    +  +PAMQG+DMIG A TGTGKTLAFGIPI D+I RHN KNG+
Sbjct: 108 FPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGS 155

[Close]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.300e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI + NAK+G      CL+
Sbjct: 140 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLV 195

[Close]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.300e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI ++NAK+G      CL+
Sbjct: 128 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLV 183

[Close]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.600e-11
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKN 51
           F    +  EPAMQG+DM+G A TGTGKTLAFGIPI D I RHN KN
Sbjct: 122 FPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKN 167

[Close]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: SCC12_ARATH (Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

		  
Query: 53 MFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          MFYSHCL+S KGPLGAIWVA YFFK+L K Q+  T I SSV
Sbjct: 1  MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSV 41

[Close]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G22330.1 (putative mitochondrial RNA helicase 2)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI ++NAK+G      CL+
Sbjct: 128 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLV 183

[Close]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G22310.1 (putative mitochondrial RNA helicase 1)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1

		  
Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI + NAK+G      CL+
Sbjct: 140 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLV 195

[Close]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT5G40840.2 (Rad21/Rec8-like family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

		  
Query: 53 MFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          MFYSHCL+S KGPLGAIWVA YFFK+L K Q+  T I SSV
Sbjct: 1  MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSV 41

[Close]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT5G26742.2 (DEAD box RNA helicase (RH3))

HSP 1 Score: 52.0 bits (123), Expect = 4.300e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1

		  
Query: 14  PAMQGRDMIGHASTGTGKTLAFGIPIFDKIT 45
           PA+QGRD+I  A TGTGKTLAFGIPI  ++T
Sbjct: 135 PALQGRDIIARAKTGTGKTLAFGIPIIKRLT 165

[Close]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G16840.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.600e-7
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1

		  
Query: 9   ESCFE-PAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLLSSKGPLG 68
           ++CF   A QG+D+IG A TG+GKTLAFG+PI  ++     K G ++      + KG   
Sbjct: 218 KACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLY------ALKGEEA 277

Query: 69  AIWVADYFFKRL 80
             + AD + + L
Sbjct: 278 QKYAADGYLRAL 283

The following BLAST results are available for this feature:

BLAST of Spo25213.1 vs. NCBI nr
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)

BLAST of Spo25213.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902202226\|gb\|KNA14207.1\|	8.4e-13	80.8	hypothetical protein SOVF_1097...	[more]
gi\|902186683\|gb\|KNA10763.1\|	4.2e-12	84.4	hypothetical protein SOVF_1413...	[more]
gi\|731332573\|ref\|XP_010677277.1\|	1.2e-11	88.1	PREDICTED: sister chromatid co...	[more]
gi\|731332571\|ref\|XP_010677276.1\|	1.2e-11	88.1	PREDICTED: sister chromatid co...	[more]
gi\|902202227\|gb\|KNA14208.1\|	3.5e-11	74.4	hypothetical protein SOVF_1097...	[more]

BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9R5X8_SPIOL	5.9e-13	80.8	Uncharacterized protein OS=Spi...	[more]
A0A0K9QVM5_SPIOL	2.9e-12	84.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CHW3_BETVU	8.5e-12	88.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8CI08_BETVU	8.5e-12	88.1	Uncharacterized protein OS=Bet...	[more]
A0A0K9R3X4_SPIOL	2.5e-11	74.4	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RH53_ORYSJ	5.5e-12	66.6	DEAD-box ATP-dependent RNA hel...	[more]
RH9_ARATH	9.3e-12	60.7	DEAD-box ATP-dependent RNA hel...	[more]
RH53_ARATH	9.3e-12	60.7	DEAD-box ATP-dependent RNA hel...	[more]
RH9_ORYSJ	4.6e-11	67.3	DEAD-box ATP-dependent RNA hel...	[more]
SCC12_ARATH	3.9e-10	73.1	Sister chromatid cohesion 1 pr...	[more]

BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G22330.1	5.2e-13	60.7	putative mitochondrial RNA hel...	[more]
AT3G22310.1	5.2e-13	60.7	putative mitochondrial RNA hel...	[more]
AT5G40840.2	2.2e-11	73.1	Rad21/Rec8-like family protein	[more]
AT5G26742.2	4.3e-7	70.9	DEAD box RNA helicase (RH3)	[more]
AT3G16840.1	5.6e-7	37.5	P-loop containing nucleoside t...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006910	Rad21/Rec8-like protein, N-terminal	PFAM	PF04825	Rad21_Rec8_N	coord: 53..94 score: 1.
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 11..51 score: 1.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 10..52 score: 1.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..49 score: 3.4
None	No IPR available	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 54..93 score: 1.2
None	No IPR available	PANTHER	PTHR12585:SF31	SISTER CHROMATID COHESION 1 PROTEIN 2	coord: 54..93 score: 1.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004386	helicase activity