Spo25306.1 (mRNA)

Overview
NameSpo25306.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S3-3
Locationchr2 : 6204460 .. 6208242 (+)
Sequence length1620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAAAGCCCAAACCGATTTATACATCAAAAACCCTAATAAATATATCCAGCTCCAAAAAGTCCAGTAACACAGGATCCACATATCTCCTTCAACCTCTTATATACCCCTCATCCTACCACCGTCATCTGAAATTAGGGTTTTAGATTTTCTAGGTTAAAACTTCTTTCACTCTCTCTCTTCATTCCGCCTCTTCTCTCATTCTCTCTCCTCGGAGATCTGTGCAAACATGGCGACTCAGATGAGCAAGAAGCGAAAGTTCGTTGCCGATGGTGTTTTCTACGCCGAGCTCAACGAAGTGTTCACCCGTGAACTTGCTGAAGATGGATACTCTGGTGTCGAGGTTAGGGTTACTCCTATGCGCACTGAGATCATCATCCGTGCTACCCGTACCCAAAACGTTCTTGGTAATTTCATTTCCTCATCGTCTCTCGATTTGATTTGATTTTGATTGTGGTTTTTTTTTTGCGATTTTTTGATTGGGTGTATTTGGGGGTTTTGATTAGGTGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCGATTGTGCAGAAGAGGTTCAAGTTTCCTGAAAACACTGTTGAGTTGTATGCTGAGAAGGTTAACAACAGGGGTCTTTGCGCTATTGCTCAGTGTGAATCTCTCCGTTACAAGCTTCTTGGTGGGCTTGCCGTCCGAAGGTATAATTTGTTAATCTGTTGAATTATTGATAAAACTTAGTAGGAGGTTTAATTAGGTTTTGTGTTCTAATTATATGAAGTTTGATTGTTCTTTTTGCGAAGAATTATTATAAAATTTATTAAATTTGAGATCTTGTGAATAAAACTCAGTGTTGTAGCATGAAATAGGGATTTAGTATGCTCTTGAATTCTATTTTCTACATCATTGAACGCCTGATTATTTGCGTATGTCATTTTAGTTTAAGAATTTCCGTGAAGTTATGCACTTATATGCCGGACTGACTCTCATTCATCCTCCTATCCTGTATTATATGTAACTGAAATTGTTGAATTTTATTGACACAATATGTAACTGAACTTGTTGAGTTTTATTGACACTGGTTATTAATTGTTTGTACTGAGTGCTGTTTGTATTCGTTATGATGTGTGTACCACCATTTGTATTGGTGCTTCTGTACCTGCTCTGTGTCGGAAGGTGACTAGATCAGAAAACGTGCATATGATAGTTGTTTTTTGTTCATGTTAGTGAAAAAGGTGCATAGGAAAAAGGAAAGAGGTACTCAGTTTCTGTTGTTTGTTGTTTCTATGTGCTTAAGGATTGCATTGGTATGATAGTTGTATATTGTTCATGTTAGTGAATGCATATGATATAGTCACTTTTATCACTTAGTTAGTTGTCTATTGTGTTTGCATATAATTCCTGTTTTTAGTAATGTCATCTATAAAGCTGGTTGGTTATCCTGTACCAATCTTGTGTCGGAAGTTGACTAAATAAATGTTCCTCACTTTCATTCATCATCCCGAAATAGTTAATTTTCATGTGGTAATGTTAGTGAGGGCATATGATAAGCTCACTTGTAATAGTTTAATAGTTTTCTGTTGTGTGTTCCTGGTTTTTTTTAGTATAGTCATCTACAAAGCTAGTTGGTTATCCTGTACCAATCTTGTGTCGGAATTTGACTAAAGGAATGTTCCTCTCTTTCATTCATCATCCCGAAATAGTTAATTTTCATGTGGTAATGTTGGTGAGGGCATATGATATGGTCACTAGTATTTAATAGTTGTCTGTTGTGTGTTCACGGATTTTTAGTATTGTCATCTACAAAGCTAGTTGGTTATCCTGTACCAATCTTGTGTCGGAAGTTGACTAAATGAATGTTCCTCTCTTTCATTCATCATCCCTAAATAGTTAATTTTCATGTGGTAATGTTGGTGAGGGCATATGATATGGTCACTAGTAATAGTTTAATAGTTTTCTGTTGTGTGTTCCTGGTTTTTCAGTATTGTCATCTACAAAGCTAGTTGGTTATCCTGTACCAATCTTGTGTCGGAATTTGACTAAATGAATGTTCCTCTCTTTCATTCATCATCCCGAAATAGTTAATTTTCATGTGGTAATGTTAGTGAGGGCATATGATATGGTCACTAGTAATAGTTTAATAGTTTTCTGTTGTGTGTTCCTGGTTTTTTAGTATTGTCATCTACAAAGCTAGTTGGTTATCCTGTACCAATCTTGTGTCGGAATTTGACTAAATGAATGTTCCTCTCTTTCATTCATCATCCCGAAATACCTAATTTTCATGTGGTAATGTTAGTGAGGGTACATGATCATATATGTTCTGTTATTGTTTGGTGATTTTCACTGCTTTATCCGTTATGTGCCGTAGTATTTTTACACTTAACTGTATTATGTGTTCATTCTTTTCTGCTTCAAAACTATTCCTTTCTGCTTCAAAAGTGATTTGGCTGTTGCTTTTAGAGATCTACTGTCTAACTTTTGTGGTGTATGGTTTTATTTTTTCAGGGCTTGTTATGGTGTGTTGAGGTTCGTCATGGAAAGTGGTGCTAAGGGTTGTGAGGTTTGTTTTTTTTATCTTCAAGTTGACTGAAACTGGATAATTTCCTGCTATGTTGCTAGAATGACTGTATTTTGGAATGTTATTCTGATTTTTTTATAAACAGGTTATTGTTAGTGGGAAATTGAGGGCACAACGTGCTAAATCCATGAAGTTCAAGGATGGTTACATGATTTCCTCTGGTCAGCCCGTTATTGAGTACATTGACTCAGCCATCCGACACGTCCTTCTCAGACAGGTACTCGTCATGCTTTAATTTAAAGTTTGTAATTTCTATACACTCAGTTTTATTTGTTTCTAATTCAATCATGTAATGTCTTATTTTTTGTTTCTAATTCAATCGTGTAATGTCTTATCATTTGTTTCTAATTCAATCATGTAATGTCTTATTGCAGGGAGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGACCCCAAGGGCAAGGTTGGACCCCAAAAGCCAATTCCCGATGTTGTTATCATCCACACCCCTAAGGATGACGATCTATACGGAAGAGTCCCCGTTATTGCACCTGAAGTTGAGCTTATAGAACCTGTTCCAGTTCCAGTTGCTGTCCCTGTCGCTTAATCGGATTCACTAGGCTAGTTTACAGACTCTCTTTTTTACTCTTTTTATGGGCTGGTTGGTTGCTGCTAGTCACCAGACTTCATATAATGTTTTATCAAGTTGACAGTGGTGTTTCTGCACGGTCTTTATTAAGTGTTCTATGAAAATTTTTGTAGTTTCCATAACTTGGTATATTTGAGTTCAGTAAAACCAGATTTTTGCAATATGTTGCTGTTAATCCCCATTTGATTTATAGGTTTTGTTTTTTTCAAATCACTTTGAGTTTTCGGATTGGCTATTTTCTTGATGGTCTTTTGTGCTGTATGTGGTCTGTTTGATTACATTTGGAGGTTTTGGATTGATTCATAGGGTTTCAAAGAGACCCAATTTCTTTTGTGATGTGTTAATAGTTGTAGTTTGTGTTGTCTACATTTTCCTATTTAAATCCCACAAGGTTGCTTTTGTAACCTTGTGATTTAATTTCTAATTTTGGGTCTTGGACACATGAAAACGTTGTCTTTTTGGAATTAAATAAAATTCAAATGATATATTGAACGAAGAAACCATTTGTCTCAGCCAATTGATATTTTGGGCAAATTATTTCCCATTTAATCTTAACTCTTTCATTATGTGGAGCGCTAAAAGCCGCTTCATATTACTCAAAACCGATATCACCC

mRNA sequence

AAATAAAGCCCAAACCGATTTATACATCAAAAACCCTAATAAATATATCCAGCTCCAAAAAGTCCAGTAACACAGGATCCACATATCTCCTTCAACCTCTTATATACCCCTCATCCTACCACCGTCATCTGAAATTAGGGTTTTAGATTTTCTAGGTTAAAACTTCTTTCACTCTCTCTCTTCATTCCGCCTCTTCTCTCATTCTCTCTCCTCGGAGATCTGTGCAAACATGGCGACTCAGATGAGCAAGAAGCGAAAGTTCGTTGCCGATGGTGTTTTCTACGCCGAGCTCAACGAAGTGTTCACCCGTGAACTTGCTGAAGATGGATACTCTGGTGTCGAGGTTAGGGTTACTCCTATGCGCACTGAGATCATCATCCGTGCTACCCGTACCCAAAACGTTCTTGGTGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCGATTGTGCAGAAGAGGTTCAAGTTTCCTGAAAACACTGTTGAGTTGTATGCTGAGAAGGTTAACAACAGGGGTCTTTGCGCTATTGCTCAGTGTGAATCTCTCCGTTACAAGCTTCTTGGTGGGCTTGCCGTCCGAAGGGCTTGTTATGGTGTGTTGAGGTTCGTCATGGAAAGTGGTGCTAAGGGTTGTGAGGTTATTGTTAGTGGGAAATTGAGGGCACAACGTGCTAAATCCATGAAGTTCAAGGATGGTTACATGATTTCCTCTGGTCAGCCCGTTATTGAGTACATTGACTCAGCCATCCGACACGTCCTTCTCAGACAGGGAGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGACCCCAAGGGCAAGGTTGGACCCCAAAAGCCAATTCCCGATGTTGTTATCATCCACACCCCTAAGGATGACGATCTATACGGAAGAGTCCCCGTTATTGCACCTGAAGTTGAGCTTATAGAACCTGTTCCAGTTCCAGTTGCTGTCCCTGTCGCTTAATCGGATTCACTAGGCTAGTTTACAGACTCTCTTTTTTACTCTTTTTATGGGCTGGTTGGTTGCTGCTAGTCACCAGACTTCATATAATGTTTTATCAAGTTGACAGTGGTGTTTCTGCACGGTCTTTATTAAGTGTTCTATGAAAATTTTTGTAGTTTCCATAACTTGGTATATTTGAGTTCAGTAAAACCAGATTTTTGCAATATGTTGCTGTTAATCCCCATTTGATTTATAGGTTTTGTTTTTTTCAAATCACTTTGAGTTTTCGGATTGGCTATTTTCTTGATGGTCTTTTGTGCTGTATGTGGTCTGTTTGATTACATTTGGAGGTTTTGGATTGATTCATAGGGTTTCAAAGAGACCCAATTTCTTTTGTGATGTGTTAATAGTTGTAGTTTGTGTTGTCTACATTTTCCTATTTAAATCCCACAAGGTTGCTTTTGTAACCTTGTGATTTAATTTCTAATTTTGGGTCTTGGACACATGAAAACGTTGTCTTTTTGGAATTAAATAAAATTCAAATGATATATTGAACGAAGAAACCATTTGTCTCAGCCAATTGATATTTTGGGCAAATTATTTCCCATTTAATCTTAACTCTTTCATTATGTGGAGCGCTAAAAGCCGCTTCATATTACTCAAAACCGATATCACCC

Coding sequence (CDS)

ATGGCGACTCAGATGAGCAAGAAGCGAAAGTTCGTTGCCGATGGTGTTTTCTACGCCGAGCTCAACGAAGTGTTCACCCGTGAACTTGCTGAAGATGGATACTCTGGTGTCGAGGTTAGGGTTACTCCTATGCGCACTGAGATCATCATCCGTGCTACCCGTACCCAAAACGTTCTTGGTGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCGATTGTGCAGAAGAGGTTCAAGTTTCCTGAAAACACTGTTGAGTTGTATGCTGAGAAGGTTAACAACAGGGGTCTTTGCGCTATTGCTCAGTGTGAATCTCTCCGTTACAAGCTTCTTGGTGGGCTTGCCGTCCGAAGGGCTTGTTATGGTGTGTTGAGGTTCGTCATGGAAAGTGGTGCTAAGGGTTGTGAGGTTATTGTTAGTGGGAAATTGAGGGCACAACGTGCTAAATCCATGAAGTTCAAGGATGGTTACATGATTTCCTCTGGTCAGCCCGTTATTGAGTACATTGACTCAGCCATCCGACACGTCCTTCTCAGACAGGGAGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGACCCCAAGGGCAAGGTTGGACCCCAAAAGCCAATTCCCGATGTTGTTATCATCCACACCCCTAAGGATGACGATCTATACGGAAGAGTCCCCGTTATTGCACCTGAAGTTGAGCTTATAGAACCTGTTCCAGTTCCAGTTGCTGTCCCTGTCGCTTAA

Protein sequence

MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQGVLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVAVPVA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25306Spo25306gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25306.1Spo25306.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25306.1.exon.1Spo25306.1.exon.1exon
Spo25306.1.exon.2Spo25306.1.exon.2exon
Spo25306.1.exon.3Spo25306.1.exon.3exon
Spo25306.1.exon.4Spo25306.1.exon.4exon
Spo25306.1.exon.5Spo25306.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25306.1.utr5p.1Spo25306.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25306.1.CDS.1Spo25306.1.CDS.1CDS
Spo25306.1.CDS.2Spo25306.1.CDS.2CDS
Spo25306.1.CDS.3Spo25306.1.CDS.3CDS
Spo25306.1.CDS.4Spo25306.1.CDS.4CDS
Spo25306.1.CDS.5Spo25306.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25306.1.utr3p.1Spo25306.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25306.1 vs. NCBI nr
Match: gi|902213957|gb|KNA17375.1| (hypothetical protein SOVF_080530 [Spinacia oleracea])

HSP 1 Score: 475.3 bits (1222), Expect = 6.300e-131
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA
Sbjct: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240

Query: 241 VPVA 245
           VPVA
Sbjct: 241 VPVA 244
[Close]
BLAST of Spo25306.1 vs. NCBI nr
Match: gi|731376728|ref|XP_010667658.1| (PREDICTED: 40S ribosomal protein S3-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 438.3 bits (1126), Expect = 8.500e-120
Identity = 223/240 (92.92%), Postives = 231/240 (96.25%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTP RTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPSRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSIVQKRFKFPE+TVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSIVQKRFKFPEDTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV+EYIDSAIRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVVEYIDSAIRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGK+GPQKPIPDVV IH PKDD++Y R P    EVEL+EP+P+PVA
Sbjct: 181 VLGIKVKIMLDWDPKGKMGPQKPIPDVVTIHPPKDDEVY-RAPAPVQEVELVEPIPIPVA 239
[Close]
BLAST of Spo25306.1 vs. NCBI nr
Match: gi|802628257|ref|XP_012077022.1| (PREDICTED: 40S ribosomal protein S3-3-like [Jatropha curcas])

HSP 1 Score: 414.5 bits (1064), Expect = 1.300e-112
Identity = 211/241 (87.55%), Postives = 226/241 (93.78%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           +KGRRIRELTS+VQKRFKFPEN+VELYAEKVN+RGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  DKGRRIRELTSVVQKRFKFPENSVELYAEKVNSRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSA+RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGK GP  P+PD+V IH PK+++ Y RVPV+A E+E    VPVPVA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHPPKEEEEYARVPVVATEIE----VPVPVA 237

Query: 241 V 242
           V
Sbjct: 241 V 237
[Close]
BLAST of Spo25306.1 vs. NCBI nr
Match: gi|225442156|ref|XP_002275541.1| (PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera])

HSP 1 Score: 412.1 bits (1058), Expect = 6.500e-112
Identity = 207/231 (89.61%), Postives = 220/231 (95.24%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFPENTVELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSA+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVEL 232
           VLGIKVKIMLDWDPKGK GP+ P+PD+V IHTPK+++ Y R P+ A ++E+
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEV 231
[Close]
BLAST of Spo25306.1 vs. NCBI nr
Match: gi|703075624|ref|XP_010090123.1| (40S ribosomal protein S3-3 [Morus notabilis])

HSP 1 Score: 412.1 bits (1058), Expect = 6.500e-112
Identity = 214/241 (88.80%), Postives = 225/241 (93.36%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 84  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 143

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFPEN+VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 144 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 203

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSA+RHVLLRQG
Sbjct: 204 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 263

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGR-VPVIAPEVELIEPVPVPV 240
           VLGIKVKIMLDWDPKGK GP  P+PDVV IH PK++D Y R  P++AP  ++  PVPVPV
Sbjct: 264 VLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHPPKEEDEYLRSAPLLAP-ADIDLPVPVPV 323
[Close]
BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD33_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080530 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 4.400e-131
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA
Sbjct: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240

Query: 241 VPVA 245
           VPVA
Sbjct: 241 VPVA 244
[Close]
BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B2L2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_010820 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 5.900e-120
Identity = 223/240 (92.92%), Postives = 231/240 (96.25%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTP RTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPSRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSIVQKRFKFPE+TVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSIVQKRFKFPEDTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV+EYIDSAIRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVVEYIDSAIRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGK+GPQKPIPDVV IH PKDD++Y R P    EVEL+EP+P+PVA
Sbjct: 181 VLGIKVKIMLDWDPKGKMGPQKPIPDVVTIHPPKDDEVY-RAPAPVQEVELVEPIPIPVA 239
[Close]
BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Match: A0A067KFX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07469 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 9.200e-113
Identity = 211/241 (87.55%), Postives = 226/241 (93.78%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           +KGRRIRELTS+VQKRFKFPEN+VELYAEKVN+RGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  DKGRRIRELTSVVQKRFKFPENSVELYAEKVNSRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSA+RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPVA 240
           VLGIKVKIMLDWDPKGK GP  P+PD+V IH PK+++ Y RVPV+A E+E    VPVPVA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHPPKEEEEYARVPVVATEIE----VPVPVA 237

Query: 241 V 242
           V
Sbjct: 241 V 237
[Close]
BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Match: W9QJX2_9ROSA (40S ribosomal protein S3-3 OS=Morus notabilis GN=L484_027355 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 4.600e-112
Identity = 214/241 (88.80%), Postives = 225/241 (93.36%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 84  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 143

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFPEN+VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 144 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 203

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSA+RHVLLRQG
Sbjct: 204 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 263

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGR-VPVIAPEVELIEPVPVPV 240
           VLGIKVKIMLDWDPKGK GP  P+PDVV IH PK++D Y R  P++AP  ++  PVPVPV
Sbjct: 264 VLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHPPKEEDEYLRSAPLLAP-ADIDLPVPVPV 323
[Close]
BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Match: D7TZU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01460 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 4.600e-112
Identity = 207/231 (89.61%), Postives = 220/231 (95.24%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVF+AELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFPENTVELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSA+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVEL 232
           VLGIKVKIMLDWDPKGK GP+ P+PD+V IHTPK+++ Y R P+ A ++E+
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEV 231
[Close]
BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.000e-109
Identity = 202/237 (85.23%), Postives = 215/237 (90.72%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+A+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPV 238
           VLGIKVKIMLDWDP GK GP+ P+PDVVIIH PKDD +Y      A  V L++  P+
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPVTLVQEAPL 237
[Close]
BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 6.800e-109
Identity = 203/248 (81.85%), Postives = 220/248 (88.71%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP+++VELYAEKV NRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+A+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPV- 240
           VLG+KVKIMLDWDPKGK GP  P+PDVVIIHTPK+DD+Y     +  +   +   P+   
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEAPLTTT 240

Query: 241 ---AVPVA 245
              A+PVA
Sbjct: 241 DYPAMPVA 248
[Close]
BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.200e-107
Identity = 203/249 (81.53%), Postives = 220/249 (88.35%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSA+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDD-LYGRVPVIAPEVEL----IEPV 240
           VLGIKVK+MLDWDPKG  GP+ P+PDVVIIH+PK+++ +Y    V AP   +    +  V
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAAPAALVADAPLTAV 240

Query: 241 PVPVAVPVA 245
             P  +PVA
Sbjct: 241 DYPAMIPVA 249
[Close]
BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2)

HSP 1 Score: 353.6 bits (906), Expect = 1.700e-96
Identity = 178/216 (82.41%), Postives = 192/216 (88.89%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA Q+SKKRKFVADG+F AELNE  TRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELT++VQKRF FPE +VELYAEKV  RGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+A+RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDD 217
           VLGIKVKIML WDP GK+GP+KP+PD V I  PKD+
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
[Close]
BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.700e-96
Identity = 178/216 (82.41%), Postives = 192/216 (88.89%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA QMSKKRKFVADG+F AELNE  TRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELT++VQKRF FPE +VELYAEKV  RGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+A+RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDD 217
           VLGIKVKIML WDP GK+GP+KP+PD V I  PKD+
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
[Close]
BLAST of Spo25306.1 vs. TAIR (Arabidopsis)
Match: AT2G31610.1 (Ribosomal protein S3 family protein)

HSP 1 Score: 397.5 bits (1020), Expect = 5.900e-111
Identity = 202/237 (85.23%), Postives = 215/237 (90.72%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+A+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPV 238
           VLGIKVKIMLDWDP GK GP+ P+PDVVIIH PKDD +Y      A  V L++  P+
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPVTLVQEAPL 237
[Close]
BLAST of Spo25306.1 vs. TAIR (Arabidopsis)
Match: AT5G35530.1 (Ribosomal protein S3 family protein)

HSP 1 Score: 394.8 bits (1013), Expect = 3.800e-110
Identity = 203/248 (81.85%), Postives = 220/248 (88.71%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP+++VELYAEKV NRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+A+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDDLYGRVPVIAPEVELIEPVPVPV- 240
           VLG+KVKIMLDWDPKGK GP  P+PDVVIIHTPK+DD+Y     +  +   +   P+   
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEAPLTTT 240

Query: 241 ---AVPVA 245
              A+PVA
Sbjct: 241 DYPAMPVA 248
[Close]
BLAST of Spo25306.1 vs. TAIR (Arabidopsis)
Match: AT3G53870.1 (Ribosomal protein S3 family protein)

HSP 1 Score: 389.8 bits (1000), Expect = 1.200e-108
Identity = 203/249 (81.53%), Postives = 220/249 (88.35%), Query Frame = 1 

		  

Query: 1   MATQMSKKRKFVADGVFYAELNEVFTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVFYAELNEV TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSIVQKRFKFPENTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVIEYIDSAIRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSA+RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKVGPQKPIPDVVIIHTPKDDD-LYGRVPVIAPEVEL----IEPV 240
           VLGIKVK+MLDWDPKG  GP+ P+PDVVIIH+PK+++ +Y    V AP   +    +  V
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAAPAALVADAPLTAV 240

Query: 241 PVPVAVPVA 245
             P  +PVA
Sbjct: 241 DYPAMIPVA 249
The following BLAST results are available for this feature:
BLAST of Spo25306.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213957|gb|KNA17375.1|6.3e-131100.hypothetical protein SOVF_0805... [more]
gi|731376728|ref|XP_010667658.1|8.5e-12092.9PREDICTED: 40S ribosomal prote... [more]
gi|802628257|ref|XP_012077022.1|1.3e-11287.5PREDICTED: 40S ribosomal prote... [more]
gi|225442156|ref|XP_002275541.1|6.5e-11289.6PREDICTED: 40S ribosomal prote... [more]
gi|703075624|ref|XP_010090123.1|6.5e-11288.840S ribosomal protein S3-3 [Mo... [more]
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BLAST of Spo25306.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RD33_SPIOL4.4e-131100.Uncharacterized protein OS=Spi... [more]
A0A0J8B2L2_BETVU5.9e-12092.9Uncharacterized protein OS=Bet... [more]
A0A067KFX0_JATCU9.2e-11387.5Uncharacterized protein OS=Jat... [more]
W9QJX2_9ROSA4.6e-11288.840S ribosomal protein S3-3 OS=... [more]
D7TZU1_VITVI4.6e-11289.6Putative uncharacterized prote... [more]
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BLAST of Spo25306.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS31_ARATH1.0e-10985.240S ribosomal protein S3-1 OS=... [more]
RS33_ARATH6.8e-10981.840S ribosomal protein S3-3 OS=... [more]
RS32_ARATH2.2e-10781.540S ribosomal protein S3-2 OS=... [more]
RS31_XENLA1.7e-9682.440S ribosomal protein S3-A OS=... [more]
RS32_XENLA1.7e-9682.440S ribosomal protein S3-B OS=... [more]
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BLAST of Spo25306.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G31610.15.9e-11185.2Ribosomal protein S3 family pr... [more]
AT5G35530.13.8e-11081.8Ribosomal protein S3 family pr... [more]
AT3G53870.11.2e-10881.5Ribosomal protein S3 family pr... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001351Ribosomal protein S3, C-terminalGENE3D3.30.1140.32coord: 93..193
score: 1.6
IPR001351Ribosomal protein S3, C-terminalunknownSSF54821Ribosomal protein S3 C-terminal domaincoord: 93..191
score: 4.19
IPR004044K Homology domain, type 2PFAMPF07650KH_2coord: 20..93
score: 2.3
IPR004044K Homology domain, type 2PROFILEPS50823KH_TYPE_2coord: 21..92
score: 10
IPR004087K Homology domainSMARTSM00322kh_6coord: 42..106
score: 0
IPR005703Ribosomal protein S3, eukaryotic/archaealTIGRFAMsTIGR01008TIGR01008coord: 8..191
score: 4.3
IPR009019K homology domain, prokaryotic typeunknownSSF54814Prokaryotic type KH domain (KH-domain type II)coord: 10..99
score: 1.18
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 21..86
score: 1.
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 147..183
scor
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 1..230
score: 1.7E
NoneNo IPR availablePANTHERPTHR11760:SF2040S RIBOSOMAL PROTEIN S3-1-RELATEDcoord: 1..230
score: 1.7E
NoneNo IPR availablePFAMPF00189Ribosomal_S3_Ccoord: 106..188
score: 2.9

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome