Spo25390.1 (mRNA)

Overview
NameSpo25390.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionDNA ligase (6.5.1.1)
Locationchr1 : 3720533 .. 3725498 (-)
Sequence length616
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTGATGGATCATCATAGGGTCATTAAGGCAAAGGCCATGACCAGAAGACACGAAGCACGAAATCAGCAAAAGGTGAGTACGAACAAGCTAGAATAACATTCTATCCTAACATTCTTCACTCGACAAATTAAATAATCCACATGCAAAAGACATGTAATAAACAATTAAACATGGAGACAAGACTCGACACTTGACACGACTCTTGACTCACAGATTAATAAAAAGTAGCTTCGAACGGGTAAAGTAAAGTATCCTCAAAAGGAAAGAGAGGGTGATGGGAGCCAACCATACACCAAAATAAGTCGGGCTACTACCGACAGTCGGGCCATACCGACAGGAATTCCAATGCACAACGGCATAAATGAAGAATGAAACAACGTCTTGTATCATTCTAGGAGTACAAGTTTTCCGGCAAGACTCCCCCCATTGTTCATACTCAAGGTATATACGTTCCAAGAGTTTTGAAGCTCTTTGCGTTACACTTTACGTTAATTAGTATATTATGTTCAAGGCGACTCAAGACTCTACTCAAGACACAACATACAAACAATTAAACAATTAAACAATTCAACAATGATTCTTCATTATTTTACTTCTTTAGGAATTGTGATCAAACATAGACTCAAGTGAAATTACTCCCATTGTTCCTTCTCAAAAACACTGTTTGAGATAACCCGACATTGCCTATTAACAAGCGGGGTGTGCCCTTAGCACGAATTGTCCTTAATTCAATTCACATAGACTCTCTAACATATTCTACCCCCTTTGGTAGAATATATATTGCTCACTGGCAATATTCGTCTGGCTAGGAAAAAGGCTTATAGCAACGCTCTTTTATGCAACGATTTTACTTGTGTTGCTATAACATAGCTATTGCAACAGTTAAATAATTATACATTTTAGTAGACTTTGAGTTTGAAAAAGTGTTGCCTTAGAAAAATTATGGCGACGGTTGTATATTTTAATTATTCTATTGCAGTAGTTTTTATGTTTTGTATTTTATTGATAAGTGATGGCAACGGTTTTGGTGAAATAAGAAGTATGTTAAAAGTAAAATAAATTAATTAATTATTAAAGTATTAAGATTTTCAATAGACCACTTTTTTTTTTTGGGTTTCCCTCCCTCTCACGTTTTCACTGTTTTGTTTTGCTCCCCAAACCCTTAATTCCTTAAACACTTTCTACAGTTCTACCTCTTTTAGTTCGATTTCTTCCTCTTCGCCGTTCTCCTTCATCCTTTTCATCATCATTCTTTGGAGATTTGCGTTTCTGAATTGTTGATTGGGTCTTGGAGATAAGAGAAATTGGTGAATGGGTCTTTGAATTGGAGATGAGAGACATTGGAGAATCGTGTTTCTGAATTGGCGAGAAGAACAAGGTTATTTGTATGTTTCTTTTCGAATTTCCTCATAAATTTAAGAACCTGGGCTGTTTAAATTATTATCGATTAAAATTGGAATTTTTTGTGTGGTTTTATGGCTAATTAGGGTTTCTTAGTTAGGGAAATTCGTATGATTTTGCTCTCAGGTTTTTTTTGATGCGTGTACGATTTAATTACAGAATTATTTGTTGATTTCACAATATCAATCAATTTTGGGGATCGATCAATTGGTTGTTTTGGATGAATTTAGTTCTAAATTTTGGTAGAATTGTGTGAACGATTATATTAAACCGATTGATATTGATTAGGGTTCTAAATTAGGGTTCTATAAGGGAATTAGGTTAATTAGGGAATTGGAGGTTGATGATTCTGAATTGGCGATTGGGACTCTGAGTTGGAGATACAGAGAAATCTCGGAGGCCATTAGTTTCCTCTACATAAGACCTTATAGTCTGTGATAACCTCCCAATTCTTGATCCAACCAGACTACCAGATTCTCTCCTTTAGCTGTTAACGAGCATAGTTTGTTGTTTGCAGGTTTGGGAGGTCAAAGCAGCTAATATAACTATTAGTCCTGCTCACCGTGCTACAGTTCGTGAAGTTGATTCTAACAAGGTGTGTACTTGCTTTTTATCTTTTTGGTCAAGAACGTAAAATGCTTAACATCACCTCCACTTTGTTTTATTTGTCCCTTTCAGTCCATATATCCAGCTCCAGTTTAACTATATACTCCAGTACTGATTTCTTCTACCCCCTCTTGTGTTGATACCCATCCTTGTTGTCTGTTGTTAGGGAATTTCACTCCAGTTTCCACGTTTGGTTCGTCTTAGAGCAGATAAAGCTCCAGAGGACGCAACATCATATGTTCAAGTGAAGTAGTTGATCTTTATCAGTTCATTTTTCGGTTCCTAGGATTTATATGACATAATACGATTTTGTTACTCATATGGATGAATCAGTTCTATTTCGCAGTTCTGATTTTCAAAATATTGCTGTTGTAGTTGCTGCAATGGAAGCATTTGTTGGGCTCTATCTAGAACTTGGTTTGGTAAGCTCCTCCAGACCATGTGTATAGTAGTTACTTACACTTTTATCAATATCATTTGTTTGAATCTTGCTATGAAATCCCACTACTATGAAATTATTCTTTTGGTTAAAATTGTGGAGAGAGTATTAATTATTGTATAGAATAATTATAGAACTACTTTTCTGCCATATTCAATAGATCTGTATGGATAATTACACGAGCCCATAATCTTTGACTTTTGAAGATGGCCATTTGATGCTAATGATATATGTTTAGAAAAGTAAAACCTAAAGGCATGTAAAACTAATTTTAAGTATGTGCACCGTCTTTCCTAGCAGCATAATAACAGGCATAGTCCTAAGTATAAATAGGATGCTCTACCTTAGGTGAAGGAGTGTCATGTATTCTTCATATGATTGAGGCACAAATAAATGTAGTGTGAGAGTATGAGTGTTATAAAACAATATCTACAAAATCTAAAAATAAGGTAAATATAGTATCTTATAATTTGAATGCGTCACTAAAGTATATAAGAGGAAATCATTAATTTGATGTTAATAATGAGCTTAAAACAAGTTTCCCGTTGAATTTGTATGCTAGGTGAAAATAACCAGACAACATCTTTAGTAAATTTTACACTGTCAGAACAACAGGTAATTTGATCTGGTATTTATATGATCTGGTTTTGACTAACTTGGTTTAATTTACTGTATGGCGTACACGCATAATTTAATGTAATATTCGAAACTTTGTTTTATCTTGATTAGTAGTCTAGTCGTCTGTTTTTCTTTTTCCTCTTATTTCTGGTTGAGTTTAAGAGCAACATCTGTATACTGTATTAGTTGTCAGCATTTTAACCATAGCTTTGAAATTTACCTTACTGCATAAACTTATTATCCAGCCATTTATCCAGTCTTTACCACATTAATAATGATAATAATAGTATGTGATCCTCTCTTATTTTGATGTAGCATGCGTGATTATTGAATTTTTTGATTAAATATCAATTGGAAAACAATCTCTCAGCTGTCATAGGGTTAAGTTTACAACTTATTTAACAAAGTTTTGGGTTACGGAGAAATGTCGATGTTGGTGCTATCTTTTGTATACTTGTCAAACTGCAGGTTGCTACAATGACTTGTATACAGTTCCCTCCCTCTAGACTGTCCTGATATCCTCCTAACAATTCTCAATGTTTCCAAAAGGAAAGAAAAATCATCTCCAGCTTCTGGTTAACAAAGTTGTTATACTTGGAGGTTTTTGTTTACATTGTTTACCAAATGCATTTGTCGCGAGGTTTTTTCCTCTTGTTTTCTTATTAAGTTAAAGCTTCGCCACTTAAAATGAAAATGGATAGTAGAGATTGGGGCTCTGAGTTGGCAATTGGGACTCTCATGGATACTCTTAATTGATGGAGTTAGTTAAGCTATTAAAACAATGGCTTTTAGTGGAGTTTTGTATCAGACAGACTAACATGATCTGATAGATGATGCAGACATAGGCAAATTCTAGTGTGACCAAGAGTCCTGTTTATAGTAGAGATTTCTAAGTAGATTATTTTAGTTAAAACACCAAATTAGTGCGTTTGATACAAAGATCTATGACAGACTGACATGATCTGATAGCTGATGCAGACATAGGCAAATTCTAGTGTGACCAAGAGTTCTGTTTATAGTAGAGATTTCTAAGTAGATTATTTTAGTTAAAACACCAAATTAGTGCGTTTGATACAAAGATCTATGATCTGGTTTTGGTTTTATCAATAGAGAGGCAATAATAGGTAGAGCTTCATTGTTAGTAATGAAGATACAAGCAGATTGAAGATTCAAAGTTATTTCTAAAAGATTAATTGACACTGTAACTAAATACTAGAATAAGCTGATGTAGACACATTGCTAATTTCGACGGTTCATTATGCATTTGTCATATACCAGTTTGTCATTTTCGTCCAAAATTCAAGTGTTTAAATCTCAGGTTGTATGAGGAAAATCAGCACTTCATATATTTGTCATTAGTTAGAAGTATTAGATTGGTTGTGTTTAGCCTTTAGAGACTTGTTGTTCATTTCTGATCTGCGTTGCTGTTCAGTTCTGTTCGGATTTGCTTTGTTGTTCAGTTTTGTTTTGATCTTCTTTGTTCAGTTCAGTTTTGATCTTCTTTGCCGTTCAGTTCTTTTTTGATCGGTTGCTTTTTAAGTTCCTTTTTGATCTGCTTTGCTCGTTTTTGTTTCTTTCAGTGCAACTGTGTTGTGTGGTTTTCAGCTGTTTTGCAGAATTGATCATATTATTTCATTTTAATTACATGCATTAATTTTCTTATTATATTGACTATTATTTTTGTGTTTACAGGGTGGTAGATAAAAGGATGGCATGAAGGGAATAGATTGAAGTTCTTTTGGACTGATTTGGACAAATAAATTAAATACTACATAGATTTTAGATTGCTTAAACTAATACTCCGTAGTTTTCATATTATAACAATGGTTTTCGTTATTAGAATGGTTTTTATGGATATTTTATTTTAATAATAAGTAAAACTTAATTCGAAATAAA

mRNA sequence

ATGCAATTGATGGATCATCATAGGGTCATTAAGGCAAAGGCCATGACCAGAAGACACGAAGCACGAAATCAGCAAAAGGTTTGGGAGGTCAAAGCAGCTAATATAACTATTAGTCCTGCTCACCGTGCTACAGTTCGTGAAGTTGATTCTAACAAGGGAATTTCACTCCAGTTTCCACGTTTGGTTCGTCTTAGAGCAGATAAAGCTCCAGAGGACGCAACATCATATGTTCAAGTGAAGTAGTTGATCTTTATCAGTTCATTTTTCGGTTCCTAGGATTTATATGACATAATACGATTTTGTTACTCATATGGATGAATCAGTTCTATTTCGCAGTTCTGATTTTCAAAATATTGCTGTTGTAGTTGCTGCAATGGAAGCATTTGTTGGGCTCTATCTAGAACTTGGTTTGGGTGGTAGATAAAAGGATGGCATGAAGGGAATAGATTGAAGTTCTTTTGGACTGATTTGGACAAATAAATTAAATACTACATAGATTTTAGATTGCTTAAACTAATACTCCGTAGTTTTCATATTATAACAATGGTTTTCGTTATTAGAATGGTTTTTATGGATATTTTATTTTAATAATAAGTAAAACTTAATTCGAAATAAA

Coding sequence (CDS)

ATGCAATTGATGGATCATCATAGGGTCATTAAGGCAAAGGCCATGACCAGAAGACACGAAGCACGAAATCAGCAAAAGGTTTGGGAGGTCAAAGCAGCTAATATAACTATTAGTCCTGCTCACCGTGCTACAGTTCGTGAAGTTGATTCTAACAAGGGAATTTCACTCCAGTTTCCACGTTTGGTTCGTCTTAGAGCAGATAAAGCTCCAGAGGACGCAACATCATATGTTCAAGTGAAGTAG

Protein sequence

MQLMDHHRVIKAKAMTRRHEARNQQKVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQVK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25390Spo25390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25390.1Spo25390.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25390.1.CDS.3Spo25390.1.CDS.3CDS
Spo25390.1.CDS.2Spo25390.1.CDS.2CDS
Spo25390.1.CDS.1Spo25390.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25390.1.utr3p.2Spo25390.1.utr3p.2three_prime_UTR
Spo25390.1.utr3p.1Spo25390.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25390.1.exon.4Spo25390.1.exon.4exon
Spo25390.1.exon.3Spo25390.1.exon.3exon
Spo25390.1.exon.2Spo25390.1.exon.2exon
Spo25390.1.exon.1Spo25390.1.exon.1exon


Homology
[Close]
BLAST of Spo25390.1 vs. NCBI nr
Match: gi|902221139|gb|KNA18807.1| (hypothetical protein SOVF_067450, partial [Spinacia oleracea])

HSP 1 Score: 105.9 bits (263), Expect = 3.300e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

		  

Query: 27 VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
          VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQ+
Sbjct: 1  VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQL 53
[Close]
BLAST of Spo25390.1 vs. NCBI nr
Match: gi|902234638|gb|KNA23525.1| (hypothetical protein SOVF_024140 [Spinacia oleracea])

HSP 1 Score: 91.3 bits (225), Expect = 8.400e-16
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA V EVDSNKGISL+FPRLVRLR DKAPEDATS VQV
Sbjct: 745 EVWEVKAADLTISPVHRAAVGEVDSNKGISLRFPRLVRLREDKAPEDATSSVQV 798
[Close]
BLAST of Spo25390.1 vs. NCBI nr
Match: gi|731355459|ref|XP_010689152.1| (PREDICTED: DNA ligase 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA V EVDS+KGISL+FPRL+R+R DKAPEDATS  QV
Sbjct: 811 EVWEVKAADLTISPVHRAAVGEVDSDKGISLRFPRLLRIREDKAPEDATSSDQV 864
[Close]
BLAST of Spo25390.1 vs. NCBI nr
Match: gi|870850230|gb|KMT02360.1| (hypothetical protein BVRB_9g205840 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA V EVDS+KGISL+FPRL+R+R DKAPEDATS  QV
Sbjct: 910 EVWEVKAADLTISPVHRAAVGEVDSDKGISLRFPRLLRIREDKAPEDATSSDQV 963
[Close]
BLAST of Spo25390.1 vs. NCBI nr
Match: gi|566185702|ref|XP_002314303.2| (hypothetical protein POPTR_0009s01140g [Populus trichocarpa])

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-12
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 

		  

Query: 25  QKVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           ++VWEVKAA++TISP HRA + EVD NKGISL+FPRLVR+R DK+PE A+S  QV
Sbjct: 364 KEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQV 418
[Close]
BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIX2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_067450 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.300e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

		  

Query: 27 VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
          VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQ+
Sbjct: 1  VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQL 53
[Close]
BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVH1_SPIOL (DNA ligase OS=Spinacia oleracea GN=SOVF_024140 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-16
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA V EVDSNKGISL+FPRLVRLR DKAPEDATS VQV
Sbjct: 745 EVWEVKAADLTISPVHRAAVGEVDSNKGISLRFPRLVRLREDKAPEDATSSVQV 798
[Close]
BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLT6_BETVU (DNA ligase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g205840 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA V EVDS+KGISL+FPRL+R+R DKAPEDATS  QV
Sbjct: 910 EVWEVKAADLTISPVHRAAVGEVDSDKGISLRFPRLLRIREDKAPEDATSSDQV 963
[Close]
BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Match: B9HQN9_POPTR (DNA ligase OS=Populus trichocarpa GN=POPTR_0009s01140g PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 7.900e-13
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 

		  

Query: 25  QKVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           ++VWEVKAA++TISP HRA + EVD NKGISL+FPRLVR+R DK+PE A+S  QV
Sbjct: 364 KEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQV 418
[Close]
BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Match: Q2PEZ1_TRIPR (DNA ligase (Fragment) OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-12
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP +RA V +VDSNKGISL+FPRLVR+R DKAPE A+S  QV
Sbjct: 608 EVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQV 661
[Close]
BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 6.600e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA    VD +KGISL+FPRL+R+R DK PE+ATS  Q+
Sbjct: 716 EVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQI 769
[Close]
BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 

		  

Query: 27   VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
            VWEV AA+++ISP H A    +D NKGI+L+FPR +R+R DK+PEDATS  QV
Sbjct: 1117 VWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPEDATSSDQV 1169
[Close]
BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Match: DNLI1_XENLA (DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-10
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 

		  

Query: 26   KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
            +VWEVK A+++ISP H+A +  V+  KGISL+FPR +R+R DK PE++T+  QV
Sbjct: 993  QVWEVKCADLSISPVHKAALGLVEDQKGISLRFPRFLRIRDDKKPEESTNSFQV 1046
[Close]
BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Match: DNLI1_RAT (DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-10
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 

		  

Query: 27  VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           VWEVK A++T+SP +RA    VD  KGISL+FPR +R+R DK PE AT+  QV
Sbjct: 841 VWEVKCADLTLSPIYRAARGMVDKEKGISLRFPRFIRVREDKQPEQATTSDQV 893
[Close]
BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Match: DNLI1_DROME (DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 9.000e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVK A++++SP HRA +  VD  +GISL+FPR +R+R DK  E+AT   QV
Sbjct: 667 QVWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATDANQV 720
[Close]
BLAST of Spo25390.1 vs. TAIR (Arabidopsis)
Match: AT1G08130.1 (DNA ligase 1)

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++TISP HRA    VD +KGISL+FPRL+R+R DK PE+ATS  Q+
Sbjct: 716 EVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQI 769
[Close]
BLAST of Spo25390.1 vs. TAIR (Arabidopsis)
Match: AT1G49250.1 (ATP-dependent DNA ligase)

HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1 

		  

Query: 26  KVWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
           +VWEVKAA++T+SP +R  +  VD +KGISL+FPRLVR+R DK PE+AT+  Q+
Sbjct: 583 EVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPRLVRIRKDKNPEEATTSDQI 636
[Close]
BLAST of Spo25390.1 vs. TAIR (Arabidopsis)
Match: AT1G66730.1 (DNA LIGASE 6)

HSP 1 Score: 49.7 bits (117), Expect = 9.900e-7
Identity = 19/53 (35.85%), Postives = 35/53 (66.04%), Query Frame = 1 

		  

Query: 27   VWEVKAANITISPAHRATVREVDSNKGISLQFPRLVRLRADKAPEDATSYVQV 80
            VWE++ A+ T+SP H A++  V  ++GIS++FPR +    D+ PE+ ++   +
Sbjct: 1327 VWEIRGADFTVSPVHSASLGLVHPSRGISVRFPRFISKVTDRNPEECSTATDI 1379
The following BLAST results are available for this feature:
BLAST of Spo25390.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221139|gb|KNA18807.1|3.3e-2098.1hypothetical protein SOVF_0674... [more]
gi|902234638|gb|KNA23525.1|8.4e-1683.3hypothetical protein SOVF_0241... [more]
gi|731355459|ref|XP_010689152.1|7.9e-1475.9PREDICTED: DNA ligase 1-like [... [more]
gi|870850230|gb|KMT02360.1|7.9e-1475.9hypothetical protein BVRB_9g20... [more]
gi|566185702|ref|XP_002314303.2|1.1e-1269.0hypothetical protein POPTR_000... [more]
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BLAST of Spo25390.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RIX2_SPIOL2.3e-2098.1Uncharacterized protein (Fragm... [more]
A0A0K9RVH1_SPIOL5.8e-1683.3DNA ligase OS=Spinacia olerace... [more]
A0A0J8BLT6_BETVU5.5e-1475.9DNA ligase OS=Beta vulgaris su... [more]
B9HQN9_POPTR7.9e-1369.0DNA ligase OS=Populus trichoca... [more]
Q2PEZ1_TRIPR1.3e-1272.2DNA ligase (Fragment) OS=Trifo... [more]
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BLAST of Spo25390.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DNLI1_ARATH6.6e-1364.8DNA ligase 1 OS=Arabidopsis th... [more]
DNLI1_DICDI3.6e-1160.3DNA ligase 1 OS=Dictyostelium ... [more]
DNLI1_XENLA2.4e-1053.7DNA ligase 1 OS=Xenopus laevis... [more]
DNLI1_RAT2.4e-1058.4DNA ligase 1 OS=Rattus norvegi... [more]
DNLI1_DROME9.0e-1053.7DNA ligase 1 OS=Drosophila mel... [more]
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BLAST of Spo25390.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G08130.13.7e-1464.8DNA ligase 1[more]
AT1G49250.15.4e-1359.2ATP-dependent DNA ligase[more]
AT1G66730.19.9e-735.8DNA LIGASE 6[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 23..68
score: 2.
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 23..79
score: 2.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 22..77
score: 5.82
NoneNo IPR availablePANTHERPTHR10459DNA LIGASEcoord: 2..79
score: 1.6
NoneNo IPR availablePANTHERPTHR10459:SF10DNA LIGASE 1coord: 2..79
score: 1.6

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0051103 DNA ligation involved in DNA repair
biological_process GO:0006260 DNA replication
molecular_function GO:0003910 DNA ligase (ATP) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding