Spo25538.1 (mRNA) | SpinachBase

Overview


Name	Spo25538.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I P700 chlorophyll a apoprotein A1 (1.97.1.12) (PSI-A) (PsaA)
Location	chr6 : 16443080 .. 16443814 (-)
Sequence length	735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG

mRNA sequence

ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG

Coding sequence (CDS)

ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG

Protein sequence

MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVEXLSQSGSKISLVPRCGIYVESPNPATDEKATCSSED

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25538	Spo25538	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25538.1	Spo25538.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25538.1.CDS.1	Spo25538.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25538.1.exon.1	Spo25538.1.exon.1	exon

Homology

[Close]

BLAST of Spo25538.1 vs. NCBI nr
Match: gi|870868638|gb|KMT19441.1| (hypothetical protein BVRB_1g010710 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 414.1 bits (1063), Expect = 1.700e-112
Identity = 198/210 (94.29%), Postives = 202/210 (96.19%), Query Frame = 1


		  
Query: 1   MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTT 60
           MLA LFVCLVRKEEDSMIIRSPE EVKILVDRDPVKTSFE W +PGHF RTIAKG ETTT
Sbjct: 1   MLAGLFVCLVRKEEDSMIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPETTT 60

Query: 61  WIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSD 120
           WIWNLHADAH+FDSHTSDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSD
Sbjct: 61  WIWNLHADAHDFDSHTSDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSD 120

Query: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180
           PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL
Sbjct: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180

Query: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           VFAALMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVESM 210

[Close]

BLAST of Spo25538.1 vs. NCBI nr
Match: gi|1012324803|gb|KYP36760.1| (Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan])

HSP 1 Score: 407.9 bits (1047), Expect = 1.200e-110
Identity = 194/210 (92.38%), Postives = 201/210 (95.71%), Query Frame = 1


		  
Query: 1   MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTT 60
           MLA LFVC+VRKEEDSMIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG +TTT
Sbjct: 1   MLAGLFVCVVRKEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTT 60

Query: 61  WIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSD 120
           WIWNLHADAH+FDSHTSDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSD
Sbjct: 61  WIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSD 120

Query: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180
           PTHI PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGIT+ELQLYCTAIGAL
Sbjct: 121 PTHIRPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITNELQLYCTAIGAL 180

Query: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           VFAALMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVESM 210

[Close]

BLAST of Spo25538.1 vs. NCBI nr
Match: gi|290790781|gb|ADD63038.1| (photosystem I P700 apoprotein A1 (chloroplast) [Potamophila parviflora])

HSP 1 Score: 404.1 bits (1037), Expect = 1.800e-109
Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED MIIRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MASLFVCLVRKEEDLMIIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. NCBI nr
Match: gi|290790712|gb|ADD62970.1| (photosystem I P700 apoprotein A1 (chloroplast) [Oryza australiensis])

HSP 1 Score: 402.5 bits (1033), Expect = 5.200e-109
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED M+IRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MAGLFVCLVRKEEDLMMIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. NCBI nr
Match: gi|42795488|gb|AAS46055.1| (photosystem I P700 chlorophyll A apoprotein A1 (chloroplast) [Oryza sativa Indica Group])

HSP 1 Score: 402.5 bits (1033), Expect = 5.200e-109
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED M+IRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MAGLFVCLVRKEEDLMMIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUS3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g010710 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.200e-112
Identity = 198/210 (94.29%), Postives = 202/210 (96.19%), Query Frame = 1


		  
Query: 1   MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTT 60
           MLA LFVCLVRKEEDSMIIRSPE EVKILVDRDPVKTSFE W +PGHF RTIAKG ETTT
Sbjct: 1   MLAGLFVCLVRKEEDSMIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPETTT 60

Query: 61  WIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSD 120
           WIWNLHADAH+FDSHTSDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSD
Sbjct: 61  WIWNLHADAHDFDSHTSDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSD 120

Query: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180
           PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL
Sbjct: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180

Query: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           VFAALMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVESM 210

[Close]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: A0A151R2J4_CAJCA (Photosystem I P700 chlorophyll a apoprotein A1 family OS=Cajanus cajan GN=KK1_042105 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 8.600e-111
Identity = 194/210 (92.38%), Postives = 201/210 (95.71%), Query Frame = 1


		  
Query: 1   MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTT 60
           MLA LFVC+VRKEEDSMIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG +TTT
Sbjct: 1   MLAGLFVCVVRKEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTT 60

Query: 61  WIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSD 120
           WIWNLHADAH+FDSHTSDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSD
Sbjct: 61  WIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSD 120

Query: 121 PTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL 180
           PTHI PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGIT+ELQLYCTAIGAL
Sbjct: 121 PTHIRPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITNELQLYCTAIGAL 180

Query: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           VFAALMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 VFAALMLFAGWFHYHKAAPKLAWFQDVESM 210

[Close]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KJ95_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Potamophila parviflora GN=psaA PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.200e-109
Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED MIIRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MASLFVCLVRKEEDLMIIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KIV9_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza meridionalis GN=psaA PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 3.600e-109
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED M+IRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MAGLFVCLVRKEEDLMMIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KJ27_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza australiensis GN=psaA PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 3.600e-109
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1


		  
Query: 2   LARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTW 61
           +A LFVCLVRKEED M+IRSPE EVKI+VDRDPVKTSFE W +PGHF RTIAKG +TTTW
Sbjct: 1   MAGLFVCLVRKEEDLMMIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTW 60

Query: 62  IWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDP 121
           IWNLHADAH+FDSHT DLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDP
Sbjct: 61  IWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDP 120

Query: 122 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALV 181
           THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGAL+
Sbjct: 121 THIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALI 180

Query: 182 FAALMLFAGWFHYHKAAPKLAWFQDVEXL 211
           FA+LMLFAGWFHYHKAAPKLAWFQDVE +
Sbjct: 181 FASLMLFAGWFHYHKAAPKLAWFQDVESM 209

[Close]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.700e-107
Identity = 185/194 (95.36%), Postives = 188/194 (96.91%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDPVKTSFEAW KPGHF RTIAKG ETTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_OENEH (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri GN=psaA PE=3 SV=2)

HSP 1 Score: 386.7 bits (992), Expect = 1.800e-106
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG ETTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQ+WRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.800e-106
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDPVKTSFE W KPGHF RTIAKG ETTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQ+WRASGITSELQLYCTAIGAL+FAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTAIGALIFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_AETCO (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium GN=psaA PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.400e-106
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG +TTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_NASOF (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nasturtium officinale GN=psaA PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.400e-106
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG +TTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 386.3 bits (991), Expect = 1.400e-107
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1


		  
Query: 17  MIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHT 76
           MIIRSPE EVKILVDRDP+KTSFE W KPGHF RTIAKG +TTTWIWNLHADAH+FDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 77  SDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 136
           SDLEEISRK FSAHFGQLSIIFLWL+GMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 137 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 196
           QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK
Sbjct: 121 QEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHK 180

Query: 197 AAPKLAWFQDVEXL 211
           AAPKLAWFQDVE +
Sbjct: 181 AAPKLAWFQDVESM 194

[Close]

BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.300e-25
Identity = 68/169 (40.24%), Postives = 94/169 (55.62%), Query Frame = 1


		  
Query: 48  FPRTIAKGLE---TTTWIWNLHADAHNFDSHTSDLEE-ISRKFFSAHFGQLSIIFLWLNG 107
           FPR  ++GL    TT  IW   A AH+F+SH    EE + +  F++HFGQL+IIFLW +G
Sbjct: 5   FPR-FSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSG 64

Query: 108 MYFHGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG-IQIT-SGFFQI 167
             FH A   N+E W+ DP H+ P A  +W P  GQ  +     GG  G + I  SG +Q 
Sbjct: 65  NLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQW 124

Query: 168 WRASGITSELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQDVE 209
           W   G+ +   LY  A+  L  +AL L  GW H   K  P+++WF++ E
Sbjct: 125 WYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAE 172

The following BLAST results are available for this feature:

BLAST of Spo25538.1 vs. NCBI nr
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
BLAST of Spo25538.1 vs. TAIR (Arabidopsis)

BLAST of Spo25538.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|870868638\|gb\|KMT19441.1\|	1.7e-112	94.2	hypothetical protein BVRB_1g01...	[more]
gi\|1012324803\|gb\|KYP36760.1\|	1.2e-110	92.3	Photosystem I P700 chlorophyll...	[more]
gi\|290790781\|gb\|ADD63038.1\|	1.8e-109	90.9	photosystem I P700 apoprotein ...	[more]
gi\|290790712\|gb\|ADD62970.1\|	5.2e-109	90.4	photosystem I P700 apoprotein ...	[more]
gi\|42795488\|gb\|AAS46055.1\|	5.2e-109	90.4	photosystem I P700 chlorophyll...	[more]

BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8FUS3_BETVU	1.2e-112	94.2	Uncharacterized protein OS=Bet...	[more]
A0A151R2J4_CAJCA	8.6e-111	92.3	Photosystem I P700 chlorophyll...	[more]
E9KJ95_9ORYZ	1.2e-109	90.9	Photosystem I P700 chlorophyll...	[more]
E9KIV9_9ORYZ	3.6e-109	90.4	Photosystem I P700 chlorophyll...	[more]
E9KJ27_9ORYZ	3.6e-109	90.4	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSAA_SPIOL	1.7e-107	95.3	Photosystem I P700 chlorophyll...	[more]
PSAA_OENEH	1.8e-106	93.8	Photosystem I P700 chlorophyll...	[more]
PSAA_CITSI	1.8e-106	93.8	Photosystem I P700 chlorophyll...	[more]
PSAA_AETCO	2.4e-106	93.8	Photosystem I P700 chlorophyll...	[more]
PSAA_NASOF	2.4e-106	93.8	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
ATCG00350.1	1.4e-107	93.8	Photosystem I, PsaA/PsaB prote...	[more]
ATCG00340.1	1.3e-25	40.2	Photosystem I, PsaA/PsaB prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 172..196 score: 1.1E-21coord: 86..109 score: 1.1
IPR001280	Photosystem I PsaA/PsaB	GENE3D	1.20.1130.10		coord: 17..210 score: 2.6
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 48..209 score: 1.7
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 42..211 score: 7.19
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 43..212 score: 1.3E
None	No IPR available	PANTHER	PTHR30128:SF8	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 43..212 score: 1.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity