Spo25717.1 (mRNA) | SpinachBase

Overview


Name	Spo25717.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BHLH transcription factor
Location	chr1 : 38460042 .. 38461824 (+)
Sequence length	1138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGACTCTTCTTAGAATTCAAGTATTCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCAAAGTTGAAACCAATAACATTTGTTATTAAAAGCAGCCATCCCCTTCGCCCACTGCGTTCTCCCATGCACTTGTCTTCTTCATCTCCAACACCCGCCACTGTTTTCTCTCTTTCCTCACCTCCATTTCCCTCTTCTTCATGCTTTCCATTCCTCCCTTTTTATTTTTATTTTTTTATTATTAAATAAACAAACAAACAAACAGTAACTCCCCTGCCCTCTTCCTTTAAATACTTGCTCTTTCTTTCATTCTCTTCCATTGCCCATACATTCATATCTCTCTCTTTCATATTCATTCTCTGACAATTAATATTACACAACTTGCTTCTTCTTCGTCTTCTTCCTTCCTTCCTTCACTCATTAATTCAAGTGTTGTTACTTGTTAGTTAAGATCAATACATAAATAGATATAATTATGTCGAGCAGACGATCACGTTCCAGGCAATCTGGTGGTGTCTCTTCTATTAGTGATGATCAAATAGCTGACCTTGTTCGCAAGTTGCAGCAGCTTGTTCCTGAGATACATGCTAGGCGAACTTCTGACAAGGTATACACATATAACTGTTTTATGAGCGATCTTCTTTCTTACGCGTTTTTAGAGATAAGACTGCGTACATCTCAACTCTTTTAATTAATTAAGTTGTCATACCCTACTCCACTGTACATGTACATTGGAATAATTTTATACTTCGTAAATGCTTTCATGTATATTATTGTAGGAGGAATAGTGATTTAATCAATGCACATTTAATTTTGTTGTGGAGTAGAGAATAAACGAATTAATGAATGAAGCTAGCATACGTTTTGTGTGGACTTGATTGTGTTAGGGTAGATAAGTCACAAGTTCTATGTTATAACTTAGATGTATGGTGGTATGGACTTATTATTGGCTTATATGCCCATTTTATTTACTTACATTTATTATTTTGTGGTGCAACTAGAAGCAAACAATTTCATTTTGGTGTGGGACTCTTTTTTCTTCCATTAATTTCTTATCTTGCATTCAATTTTTTTCCCTTTTTTAATCCAAAGTTTACATTTTTTTCATATCACGGAGAAAATATCAGTATATTATATGATTATAAATTCTTGTAAAAGACTGTCTCGATTAATTAATTGTGATATCACATGCCACATCACCTATCTGCTGCATAGCTAGTTGACTAATATGTTTATTAATTTTTTTTGGCAGTCGGCAAATAGGGTTTTGCAGGAGACTTGCACTTATATTAGGAACTTGCATAGGGAAGTGGATGATTTAAGCGACAGATTAGCCGAGCTCTTGGCTTCAACTGACAGTGACAGTGCTCAAGCAGCCATTATTAGGAGTTTACTTATGTAAACAAAACAAAAAGAAAAAAGAAAAAAAATATATAAGTAATTATATTTAAGTAATTAGCTGGATAGTTTAATTTGGAAGCCAACATTATTATTTTTGTTAATTTTGAATTTTAAAATGCTTCTCTCCCATCTATCTAGGGTTTGGTCTCTAGCTAGCTAGACCAACAAGCAAGATAGATTGAGTGAGAGAGAGAAAACCTTAATTCGAGTGTATTTAACTAGTTCTTCTAGTAGTACTTAATTAGTTCTTACATTTTAATAATAAGTAATTTAGTACGTACTCCAATCCGCAATTGAATATCTTTCGAGTCTTCGCAATGTACTTAACTGATGAGAACGATGAATATAAAATGTATGGATATCCGGCCTTTTTAATTT

mRNA sequence

TAGGGACTCTTCTTAGAATTCAAGTATTCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCAAAGTTGAAACCAATAACATTTGTTATTAAAAGCAGCCATCCCCTTCGCCCACTGCGTTCTCCCATGCACTTGTCTTCTTCATCTCCAACACCCGCCACTGTTTTCTCTCTTTCCTCACCTCCATTTCCCTCTTCTTCATGCTTTCCATTCCTCCCTTTTTATTTTTATTTTTTTATTATTAAATAAACAAACAAACAAACAGTAACTCCCCTGCCCTCTTCCTTTAAATACTTGCTCTTTCTTTCATTCTCTTCCATTGCCCATACATTCATATCTCTCTCTTTCATATTCATTCTCTGACAATTAATATTACACAACTTGCTTCTTCTTCGTCTTCTTCCTTCCTTCCTTCACTCATTAATTCAAGTGTTGTTACTTGTTAGTTAAGATCAATACATAAATAGATATAATTATGTCGAGCAGACGATCACGTTCCAGGCAATCTGGTGGTGTCTCTTCTATTAGTGATGATCAAATAGCTGACCTTGTTCGCAAGTTGCAGCAGCTTGTTCCTGAGATACATGCTAGGCGAACTTCTGACAAGTCGGCAAATAGGGTTTTGCAGGAGACTTGCACTTATATTAGGAACTTGCATAGGGAAGTGGATGATTTAAGCGACAGATTAGCCGAGCTCTTGGCTTCAACTGACAGTGACAGTGCTCAAGCAGCCATTATTAGGAGTTTACTTATGTAAACAAAACAAAAAGAAAAAAGAAAAAAAATATATAAGTAATTATATTTAAGTAATTAGCTGGATAGTTTAATTTGGAAGCCAACATTATTATTTTTGTTAATTTTGAATTTTAAAATGCTTCTCTCCCATCTATCTAGGGTTTGGTCTCTAGCTAGCTAGACCAACAAGCAAGATAGATTGAGTGAGAGAGAGAAAACCTTAATTCGAGTGTATTTAACTAGTTCTTCTAGTAGTACTTAATTAGTTCTTACATTTTAATAATAAGTAATTTAGTACGTACTCCAATCCGCAATTGAATATCTTTCGAGTCTTCGCAATGTACTTAACTGATGAGAACGATGAATATAAAATGTATGGATATCCGGCCTTTTTAATTT

Coding sequence (CDS)

ATGTCGAGCAGACGATCACGTTCCAGGCAATCTGGTGGTGTCTCTTCTATTAGTGATGATCAAATAGCTGACCTTGTTCGCAAGTTGCAGCAGCTTGTTCCTGAGATACATGCTAGGCGAACTTCTGACAAGTCGGCAAATAGGGTTTTGCAGGAGACTTGCACTTATATTAGGAACTTGCATAGGGAAGTGGATGATTTAAGCGACAGATTAGCCGAGCTCTTGGCTTCAACTGACAGTGACAGTGCTCAAGCAGCCATTATTAGGAGTTTACTTATGTAA

Protein sequence

MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNLHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25717	Spo25717	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25717.1	Spo25717.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25717.1.exon.1	Spo25717.1.exon.1	exon
Spo25717.1.exon.2	Spo25717.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25717.1.utr5p.1	Spo25717.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25717.1.CDS.1	Spo25717.1.CDS.1	CDS
Spo25717.1.CDS.2	Spo25717.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25717.1.utr3p.1	Spo25717.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo25717.1 vs. NCBI nr
Match: gi|902195717|gb|KNA12931.1| (hypothetical protein SOVF_121780 [Spinacia oleracea])

HSP 1 Score: 171.4 bits (433), Expect = 7.400e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL
Sbjct: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. NCBI nr
Match: gi|731341160|ref|XP_010681766.1| (PREDICTED: transcription factor PRE3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 151.4 bits (381), Expect = 7.900e-34
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIH-ARRTSDKSANRVLQETCTYIRN 60
          MSSRRSRSRQSGGVS ISDDQIADLV KLQQL+PEI  +RR SDKSANRVLQETC YIR+
Sbjct: 1  MSSRRSRSRQSGGVSGISDDQIADLVHKLQQLIPEIRGSRRNSDKSANRVLQETCNYIRS 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          LHREVDDLSDRLAELLASTDSDSAQAAIIRSL M
Sbjct: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLFM 94

[Close]

BLAST of Spo25717.1 vs. NCBI nr
Match: gi|1021027390|gb|KZM85177.1| (hypothetical protein DCAR_027401 [Daucus carota subsp. sativus])

HSP 1 Score: 139.0 bits (349), Expect = 4.100e-30
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQS G S I+DDQIADLV KLQQL+PEI +RR+   SA++VLQETC YIRNL
Sbjct: 1  MSSRRSRSRQSTGTSRITDDQIADLVSKLQQLIPEIQSRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRL+ELL STD+DSAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLSELLESTDTDSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. NCBI nr
Match: gi|747049918|ref|XP_011071014.1| (PREDICTED: transcription factor PRE6-like [Sesamum indicum])

HSP 1 Score: 137.5 bits (345), Expect = 1.200e-29
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1   MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
           MSSRRSRSRQSG VS ISDDQIADLV KLQQL+PEI  RR+   SA++VLQETC YIRNL
Sbjct: 90  MSSRRSRSRQSG-VSRISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNL 149

Query: 61  HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
           HREVDDLSDRL+ELL STDSDSAQAAIIRSLLM
Sbjct: 150 HREVDDLSDRLSELLDSTDSDSAQAAIIRSLLM 181

[Close]

BLAST of Spo25717.1 vs. NCBI nr
Match: gi|357486739|ref|XP_003613657.1| (transcription factor [Medicago truncatula])

HSP 1 Score: 136.7 bits (343), Expect = 2.000e-29
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSGG S I+D QI DL+ KLQQL+PE+HA R++  SA +VLQETC YI+NL
Sbjct: 1  MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRL++LLASTDS+SAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLSQLLASTDSNSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R085_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121780 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.200e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL
Sbjct: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C7X3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g143450 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.500e-34
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIH-ARRTSDKSANRVLQETCTYIRN 60
          MSSRRSRSRQSGGVS ISDDQIADLV KLQQL+PEI  +RR SDKSANRVLQETC YIR+
Sbjct: 1  MSSRRSRSRQSGGVSGISDDQIADLVHKLQQLIPEIRGSRRNSDKSANRVLQETCNYIRS 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          LHREVDDLSDRLAELLASTDSDSAQAAIIRSL M
Sbjct: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLFM 94

[Close]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Match: G7KCF8_MEDTR (Transcription factor OS=Medicago truncatula GN=MTR_5g039180 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-29
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSGG S I+D QI DL+ KLQQL+PE+HA R++  SA +VLQETC YI+NL
Sbjct: 1  MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRL++LLASTDS+SAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLSQLLASTDSNSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Match: I3SML9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.400e-29
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSGG S ISD QI DL+ KLQQL+PE+ ARR+   SA +VLQETC YI+NL
Sbjct: 1  MSSRRSRSRQSGGSSEISDAQITDLISKLQQLIPELRARRSDKVSAAKVLQETCNYIKNL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRL+ELLA+TDS+SAQAAIIRSLLM
Sbjct: 61 HREVDDLSDRLSELLATTDSNSAQAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Match: V4TEZ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033182mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.100e-29
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQS GVS ISDDQI DLV KLQQL+PE+ +RR+   SA+++LQETC YIR+L
Sbjct: 1  MSSRRSRSRQSSGVSRISDDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          HREVDDLSDRL+ELLAS DS+SA+AAIIRSLLM
Sbjct: 61 HREVDDLSDRLSELLASIDSNSAEAAIIRSLLM 93

[Close]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.100e-27
Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 1


		  
Query: 1  MSSRRS-RSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRN 60
          MSSRRS RSRQSG  S ISDDQI+DLV KLQ L+PE+  RR+   SA++VLQETC YIRN
Sbjct: 1  MSSRRSSRSRQSGS-SRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLL 93
          LHREVDDLSDRL+ELLASTD +SA+AAIIRSLL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.000e-25
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MS RRSRSRQS G S IS+DQI DL+ KLQQL+PE+   R SDK SA RVLQ+TC YIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLL 93
          LHREVDDLS+RL+ELLA  +SD+AQAA+IRSLL
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLL 91

[Close]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.100e-24
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MS+RRSR  Q+   S ISDDQ+ DLV KL+Q +PEIH RR SDK SA++VLQETC YIR 
Sbjct: 1  MSNRRSR--QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          LHREVD+LSDRL++LL S D DS +AA+IRSLLM
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Match: ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica GN=ILI6 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.000e-24
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSG  S I+D+QI+DLV KLQ L+PE   R      ++RVLQETC YIR+L
Sbjct: 1  MSSRRSRSRQSGS-SRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          H+EVDDLS+RL+ELLA++D  SAQAAIIRSLLM
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Match: ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica GN=ILI6 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.000e-24
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRNL 60
          MSSRRSRSRQSG  S I+D+QI+DLV KLQ L+PE   R      ++RVLQETC YIR+L
Sbjct: 1  MSSRRSRSRQSGS-SRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          H+EVDDLS+RL+ELLA++D  SAQAAIIRSLLM
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 6.300e-29
Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 1


		  
Query: 1  MSSRRS-RSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDKSANRVLQETCTYIRN 60
          MSSRRS RSRQSG  S ISDDQI+DLV KLQ L+PE+  RR+   SA++VLQETC YIRN
Sbjct: 1  MSSRRSSRSRQSGS-SRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLL 93
          LHREVDDLSDRL+ELLASTD +SA+AAIIRSLL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 117.1 bits (292), Expect = 5.900e-27
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MS RRSRSRQS G S IS+DQI DL+ KLQQL+PE+   R SDK SA RVLQ+TC YIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLL 93
          LHREVDDLS+RL+ELLA  +SD+AQAA+IRSLL
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLL 91

[Close]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 113.6 bits (283), Expect = 6.500e-26
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MS+RRSR  Q+   S ISDDQ+ DLV KL+Q +PEIH RR SDK SA++VLQETC YIR 
Sbjct: 1  MSNRRSR--QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          LHREVD+LSDRL++LL S D DS +AA+IRSLLM
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.000e-23
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MS+RRSR  QS     ISD+Q+ DLV KL+Q++PEI  RR SDK SA++VLQETC YIRN
Sbjct: 1  MSNRRSR--QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          L+REVD+LS+RL++LL S D DS +AA+IRSLLM
Sbjct: 61 LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Match: AT3G47710.1 (BANQUO 3)

HSP 1 Score: 102.8 bits (255), Expect = 1.100e-22
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 1


		  
Query: 1  MSSRRSRSRQSGGVSSISDDQIADLVRKLQQLVPEIHARRTSDK-SANRVLQETCTYIRN 60
          MSSR+SRSRQ+G  S I+D+QI DLV +L +L+PE+   R S K SA+RVLQETC+YIRN
Sbjct: 1  MSSRKSRSRQTGA-SMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 60

Query: 61 LHREVDDLSDRLAELLASTDSDSAQAAIIRSLLM 94
          L +EVDDLS+RL++LL ST  DSAQAA+IRSLLM
Sbjct: 61 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of Spo25717.1 vs. NCBI nr
BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
BLAST of Spo25717.1 vs. TAIR (Arabidopsis)

BLAST of Spo25717.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902195717\|gb\|KNA12931.1\|	7.4e-40	100.	hypothetical protein SOVF_1217...	[more]
gi\|731341160\|ref\|XP_010681766.1\|	7.9e-34	89.3	PREDICTED: transcription facto...	[more]
gi\|1021027390\|gb\|KZM85177.1\|	4.1e-30	80.6	hypothetical protein DCAR_0274...	[more]
gi\|747049918\|ref\|XP_011071014.1\|	1.2e-29	83.8	PREDICTED: transcription facto...	[more]
gi\|357486739\|ref\|XP_003613657.1\|	2.0e-29	77.4	transcription factor [Medicago...	[more]

BLAST of Spo25717.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R085_SPIOL	5.2e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C7X3_BETVU	5.5e-34	89.3	Uncharacterized protein OS=Bet...	[more]
G7KCF8_MEDTR	1.4e-29	77.4	Transcription factor OS=Medica...	[more]
I3SML9_LOTJA	2.4e-29	78.4	Uncharacterized protein OS=Lot...	[more]
V4TEZ7_9ROSI	4.1e-29	77.4	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo25717.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PRE6_ARATH	1.1e-27	76.3	Transcription factor PRE6 OS=A...	[more]
PRE3_ARATH	1.0e-25	73.1	Transcription factor PRE3 OS=A...	[more]
PRE5_ARATH	1.1e-24	68.0	Transcription factor PRE5 OS=A...	[more]
ILI6_ORYSJ	2.0e-24	68.8	Transcription factor ILI6 OS=O...	[more]
ILI6_ORYSI	2.0e-24	68.8	Transcription factor ILI6 OS=O...	[more]

BLAST of Spo25717.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G26945.1	6.3e-29	76.3	basic helix-loop-helix (bHLH) ...	[more]
AT1G74500.1	5.9e-27	73.1	activation-tagged BRI1(brassin...	[more]
AT3G28857.1	6.5e-26	68.0	basic helix-loop-helix (bHLH) ...	[more]
AT5G39860.1	1.0e-23	64.8	basic helix-loop-helix (bHLH) ...	[more]
AT3G47710.1	1.1e-22	67.0	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	4.10.280.10		coord: 20..74 score: 7.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 20..78 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 57..77 scor
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 1..93 score: 1.8
None	No IPR available	PANTHER	PTHR12565:SF148	PROTEIN BANQUO 3	coord: 1..93 score: 1.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity