Spo25727.1 (mRNA)

Overview
NameSpo25727.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 38665812 .. 38667017 (+)
Sequence length1104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATTGCCTCATACTTATGGTGTTGTGGTGGTTATATCTTTAAAGTTACAATTAGAAAGGTGGAAGCTTAGGCTAAAAAGTAGGATGAAAAGTTTCAACAGCACAGGATATACATGACCTCTCAGATCCTTATACTTTACGTTCTCCTCACATGCTGGCAATATTTTTGTGACAAATCAAGAAACGCAAAACTGACCTTTCTAATTAATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTAAACAAAAAACATCTGTTAATTTTTCTATTTTTCTATTTAAATTATTTAATCATTTATAGTCTCACAAATGAAGTGCTTTCTTTAATTTTTTTTGAGCAGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGATGGAATACACATAGACAACAAGACAATCCCTAAGTTGACCCTAAGAATAACTGTTATTACAATAAAACACGACCAGCATTATGGCAGGTCATAGAAATGATTACTGTCTGTATATTCAGGAATAATGTAACATAAAAAAGGAACAGCTTTTCAGTCAAATAAACTGTCTTCACTATTTGTTACTTTAACCTTCAAACAGAAATTTTTTGAGGACAAAGCTAATGGTGATCTATGCCCAGCTATGCAAATTTTCAGTAACACTAATTTACATAATTATGGAGCTAAATATTACACTATGGAAAGTGGAAACTATAATTGGTGCTAGTGTAAATCCG

mRNA sequence

CTCATTGCCTCATACTTATGGTGTTGTGGTGGTTATATCTTTAAAGTTACAATTAGAAAGGTGGAAGCTTAGGCTAAAAAGTAGGATGAAAAGTTTCAACAGCACAGGATATACATGACCTCTCAGATCCTTATACTTTACGTTCTCCTCACATGCTGGCAATATTTTTGTGACAAATCAAGAAACGCAAAACTGACCTTTCTAATTAATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGATGGAATACACATAGACAACAAGACAATCCCTAAGTTGACCCTAAGAATAACTGTTATTACAATAAAACACGACCAGCATTATGGCAGGTCATAGAAATGATTACTGTCTGTATATTCAGGAATAATGTAACATAAAAAAGGAACAGCTTTTCAGTCAAATAAACTGTCTTCACTATTTGTTACTTTAACCTTCAAACAGAAATTTTTTGAGGACAAAGCTAATGGTGATCTATGCCCAGCTATGCAAATTTTCAGTAACACTAATTTACATAATTATGGAGCTAAATATTACACTATGGAAAGTGGAAACTATAATTGGTGCTAGTGTAAATCCG

Coding sequence (CDS)

ATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGA

Protein sequence

MIITKKQNSCLHQHEYTHKVTYIPNRNVKESGLTFRMLFRRNPYGTTYYDNSGLVAINSRQIRVRNREAKQITSNSNNFPKYQNSTMGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPPKPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25727Spo25727gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25727.1Spo25727.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25727.1.exon.1Spo25727.1.exon.1exon
Spo25727.1.exon.2Spo25727.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25727.1.utr5p.1Spo25727.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25727.1.CDS.1Spo25727.1.CDS.1CDS
Spo25727.1.CDS.2Spo25727.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25727.1.utr3p.1Spo25727.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|902233207|gb|KNA22952.1| (hypothetical protein SOVF_029170 [Spinacia oleracea])

HSP 1 Score: 198.0 bits (502), Expect = 1.500e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 146
           MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP
Sbjct: 1   MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 60

Query: 147 KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP 187
           KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP
Sbjct: 61  KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP 100
[Close]
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855384|gb|KMT07117.1| (hypothetical protein BVRB_6g154450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 76.6 bits (187), Expect = 5.000e-11
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTC----SEINS 146
           MG T+KSALL+ LFVIAIGLP   SAM   C+S YDCR TGCPC NG+CTC     +I+S
Sbjct: 1   MGNTMKSALLLVLFVIAIGLP--ESAMG--CTSSYDCRETGCPCINGQCTCPFSSEDISS 60

Query: 147 KAPPKP 149
           KAPP P
Sbjct: 61  KAPPAP 62
[Close]
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855383|gb|KMT07116.1| (hypothetical protein BVRB_6g154440 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.0 bits (162), Expect = 3.900e-8
Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 146
           MG T+KSALLVF FVIAIGL  + S   ++CSS YDCR  GCPC NG CTCS        
Sbjct: 1   MGNTIKSALLVFFFVIAIGL--SDSNAGLRCSSTYDCREIGCPCMNGLCTCS-------- 60

Query: 147 KPPSYEINSNYPPKPPSKINSKAPPKAP--SAEQEPQSPRLP 187
                         PP+ I S AP   P  S  Q+ Q  RLP
Sbjct: 61  -------------YPPADIYSNAPTALPRSSGRQKVQESRLP 79
[Close]
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855385|gb|KMT07118.1| (hypothetical protein BVRB_6g154460 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 2.800e-6
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMD-----IQCSSQYDCRLTGCPCSNGRCTCSEIN 145
           MGK +K  LLV LF IA G  +   A        +C+S YDCRLTGCPC NG+C C E +
Sbjct: 1   MGKALKLVLLVILFTIAFGSALLREAGTEAKPLYKCTSPYDCRLTGCPCVNGKCQCQETS 60
[Close]
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVS2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029170 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.000e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 146
           MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP
Sbjct: 1   MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 60

Query: 147 KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP 187
           KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP
Sbjct: 61  KPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP 100
[Close]
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0Y1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154450 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-11
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTC----SEINS 146
           MG T+KSALL+ LFVIAIGLP   SAM   C+S YDCR TGCPC NG+CTC     +I+S
Sbjct: 1   MGNTMKSALLLVLFVIAIGLP--ESAMG--CTSSYDCRETGCPCINGQCTCPFSSEDISS 60

Query: 147 KAPPKP 149
           KAPP P
Sbjct: 61  KAPPAP 62
[Close]
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EVB8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154440 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-8
Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPP 146
           MG T+KSALLVF FVIAIGL  + S   ++CSS YDCR  GCPC NG CTCS        
Sbjct: 1   MGNTIKSALLVFFFVIAIGL--SDSNAGLRCSSTYDCREIGCPCMNGLCTCS-------- 60

Query: 147 KPPSYEINSNYPPKPPSKINSKAPPKAP--SAEQEPQSPRLP 187
                         PP+ I S AP   P  S  Q+ Q  RLP
Sbjct: 61  -------------YPPADIYSNAPTALPRSSGRQKVQESRLP 79
[Close]
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C508_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154460 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-6
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1 

		  

Query: 87  MGKTVKSALLVFLFVIAIGLPIAYSAMD-----IQCSSQYDCRLTGCPCSNGRCTCSEIN 145
           MGK +K  LLV LF IA G  +   A        +C+S YDCRLTGCPC NG+C C E +
Sbjct: 1   MGKALKLVLLVILFTIAFGSALLREAGTEAKPLYKCTSPYDCRLTGCPCVNGKCQCQETS 60
The following BLAST results are available for this feature:
BLAST of Spo25727.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|902233207|gb|KNA22952.1|1.5e-47100.hypothetical protein SOVF_0291... [more]
gi|870855384|gb|KMT07117.1|5.0e-1165.1hypothetical protein BVRB_6g15... [more]
gi|870855383|gb|KMT07116.1|3.9e-847.0hypothetical protein BVRB_6g15... [more]
gi|870855385|gb|KMT07118.1|2.8e-649.2hypothetical protein BVRB_6g15... [more]
back to top
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9RVS2_SPIOL1.0e-47100.Uncharacterized protein OS=Spi... [more]
A0A0J8C0Y1_BETVU3.5e-1165.1Uncharacterized protein OS=Bet... [more]
A0A0J8EVB8_BETVU2.7e-847.0Uncharacterized protein OS=Bet... [more]
A0A0J8C508_BETVU2.0e-649.2Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo25727.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo25727.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top