Spo25758.1 (mRNA)

Overview
NameSpo25758.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 39271295 .. 39275176 (+)
Sequence length221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGAAGTCATTTGATGTATAAGAAGGTGACCTCCTTACTATTTTTTCCTTTTGATTGTTTAATGACGAGGCCAACTGCATTTCTTGCTATATCTATTATGGAGTACTATATCTATTACTATTGATTATAATCTCATTTGCAATTTACGATTTGGTGGTTAACGAAGAGTTAAATTGAAATTTGCAACTCTTGTTGTATATTTTACCGATGATGATAAACAGATTTACAATCTGCCAAAGAAAAGAAAAACAAGTCTGGAAAGATAGAAGTCACATACAAATTTCAGTTGATGATCCAATGAGATCTGACTGGAGTGGTATTTGCAGTTATGACCATGAGTCTCCTTTACCTGATTTATTTTATTTTTCTTAGGCTGTAGGTCTTATGTGCTCGTAGCAAGCTTGGAAGTAAATTACTCCTATTTCTTAGGCATAAAGCGTAGTATGTCTTGAAACCCTGGTAAATGCAGAAGCAAAGTTCGCCAAGATTGGAATACAAACTTCCCCTTTGGGTGGAAAATAAATTTATAATCCCCCATTTTTAGACTTGCATCAGTGTAAAATGATGTCTTTTTTAGAGGCAATATTGCTCCCAATATCTGCTTGTCTTGTTTACTTCATAAAACTAGAGTTCCGTTTTCCCAGTACTTTGATGATAATGGATAAACTAGTGTCCCCTTTTGATATTGTGGGTCATTGCCGTCATTATAACACGTTATGCAGCTAATCTTGTTAACTATAGGATATAGGACAATGGTATGTTTAGGCTGATGAGTCCATTATGTTATTGTGCTGCTGGTTTATTTTCTTTGTTTTATGTTTAGAAATTTGTTCTTTAGTGTTTAATCTAAGTACCTTTGCTTTGATTTATGGAATTCTCCCGTTTGATGTACTTGTTCAGTAGTTGTTCTGTGTAATGAATTAATGATATTTGAAATCACTAACTCAATCTATTGTCTGAAAACAACTGAATTTACATGGTATTTGAAAGACTTAAATATGTTGTATTTACATTTCAGGCTCGTGATTCATTCTTTTACTTTCGCTTGCCCTTTTACAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGTAAGCACCCTTACTTTTAAGTGTTATATTTATGTGTGATAAACCTTTCTCCATTCGCTCAAGATGGAAGTTCAGGAAGTTTCAGATTGTGTAGCCTTACCCTTTTCTTTTTTATTTGGTTAAAAGGTAAGCTTAGAGTAATTTAAATTGTCTTGTCCATGGACATACAACACATAAGATCATGAGGATCCTTTAGAGAGAGACAAAAGTACTTAGTTAATACAGACCAGGGAAGGGGAAGTCATAAAATTTACAAATAATTAACTAATTAGGGTCGGGGGTGTAAGAAACCTCAAAGGTTAGAGGTGACAATGTGGCCGCCCCAGTTATAGGCTGGCAAAATTAAGCTAGATGTTCGATAGGTAACATTTAGCCATCTAGAATTTGAGTTTACGAAAGGTTTTTCTCATCATCTCATGACTTGATAATTTAGCCTCACCGCTTATACAAATATGAGTATGTAGAAGTAGTTGGCTATATCTAGAATTCGGGTTTTTGAAAGGTTGTTCTCATTATCATATCAGACTTGACAATGTTGTCTCCTTCTTATAATGTGGTAATTTGTAGTATCAAAAAAATCCATAACTCTTATTCGACCCTTGATTATGTTGGTTTAATTAGTTACTCGATCCCTACTTTGGTGCAGAATTATTGTTTGAAGCATTGGATAAAATTGTTGTATTCATGTCTAGTATGTCATGGTTAGCTCTTCCTTTGGTGTGTCCTGTTTCGTAGAAGAAGGAAATTTTCTGTGAACTATAAGAAAGGCTGACTATGCTAGTGGATGGTTGAGTTTATGAGGCCGGAAACTGAGAAAATATCTATGTTAAATGATGCAGGATGGGAAAGGTTAAGCTGGATATAATGAAAGTAGAGAATGCAAGCAGCCGTCAAGCCACTTATTCAAAACGGAAACATTGGAATCTTGAAAAAGGCAAGAGCTATCTATATTGTGTGATATAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGTATTACAGCTTCTGTCATTTTGATGTATGCATAACTTGATGCAGTTTCACAACCATTACTTACTTTAGGCTGTTGTTAATATTCACAGCTACATTTGTTCATTTCCTCTTGCTTAAATTATTCACCAGTTATGGCGATATCTTGAGTTTTATGTTGGCTTGAAGCCTTGAAGAACCCCTGCATGGAGGTTCTATTTTATCCAGAAAATTTTATTTACTGGGATTACATAATCTTTCAGCACCGTATAAACGTGAAATGTGCAGTTTGATCCTGTGGCAGTCCTGTAGAAACTAAAATTTCTTCAGAACAAAGTCTGTGTTTAGGATTTCGTCAGAATGCATATTTTTTATCCTTCAAAGACCAGATGAGATTCGTATCTGTAATATTTTTTTTTTCCGCCAAAATGTCTGCGCCTCTAGCTGCCCTTCCCTCGAAGGCGTCTTTAATACCTGGTTCTTGTTGAAGATAGTCCCTGCCTCAAGATATTAGATTAGATACTCTGGTGTGAATCTCATCCTGATTTTGAATGAGGTCCATGGCACAATTGCAATCTGTAGTAATAACCCCTCCCTCTAGTTTCAGTCCACTGCCCATTTAATGCCCTCAAAAATTGCAGTAACCTCTGCTTCCAATGCACTGGAGCAGTAGAAACTGAAGGTAATCCAAACACCGTGACTATTCCTACAAACACCAGAAATTCCCGATGCTTTTGACTGATTGATGAATGAGGAACCTTGATCTATTTATTCTCCAAAATCACAAGATTCAATGACCTCTGGCTTTGTTGTTTATAGAATATTTTATTGGTGTACCCCAGACATCAGAATAATAATACCGAGTTCCTGAAATTTGCTGTTAACAAACCCTCCAATTAAAGTGTGTTGTACCACATTGACAATAAACAACCAGGTTACTGTAACTACATGATATAAAAGGCAAGAATTGAGGCTAAACAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGGGCCAATGGCCCACAACGATATTAAATTTATTTTTTAAGGGGGAAGTCCCATCACAGTAGCTTGCTGCTGGGGTCTTCAAGCGTCGCCTATGCGTTGCACTACTGCACAGGCCTGGCGCACCCCACTAATTCCTAGTTTAAAAGTAAGGGCTATGGATAAAATTATAAATTGGTCTCACTTGTTTGTAAAGATAAAACTATAAATTGGATCTTTGTGTACTGCAGGTTCTAAAAAAATGGAATTTCTCTGCCAAATAAAGCTGATGTTTTCTTTTGCTGGTGTCTTCGGATCATAGGCTTGGCACCCCACTAATTCCTAGTTTAAAATTAAGAATTATGCCTTTTGTTCATTTTAAATTCCGCATAAAGATAAAATTATTACAATTGGCACCACAAAACTATTTGGTATCTTAGCTCCTCAGCTGTATCTGGGTAATGATTAATAGTAATTTCTCCCAAATTCTGCCTGTCATGTTTACTTCCACTGATGTTTTCTTTTGCTAGTCTCATCGGATCATTATTTGTTGTTTGTGTAATGGTGATTTGTTTATGTACACATTATTTTCCTTGCTTGGGTTGGTTCTTGTTTCATGCTTTGAAAACCATTATAACATTGTTTGTGATTTTGGTTCACCATGAACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

mRNA sequence

GCTGAAGTCATTTGATGTATAAGAAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGATGGGAAAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

Coding sequence (CDS)

ATGTATAAGAAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGATGGGAAAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

Protein sequence

MYKKGQTTTVQFQPLARQNPWKFNDGKDLALVMFSPGGKPSLCCGKHRTCNGICHSYSDFFVCKQAKW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25758Spo25758gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25758.1Spo25758.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25758.1.exon.1Spo25758.1.exon.1exon
Spo25758.1.exon.2Spo25758.1.exon.2exon
Spo25758.1.exon.3Spo25758.1.exon.3exon
Spo25758.1.exon.4Spo25758.1.exon.4exon
Spo25758.1.exon.5Spo25758.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25758.1.utr5p.1Spo25758.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25758.1.CDS.1Spo25758.1.CDS.1CDS
Spo25758.1.CDS.2Spo25758.1.CDS.2CDS
Spo25758.1.CDS.3Spo25758.1.CDS.3CDS
Spo25758.1.CDS.4Spo25758.1.CDS.4CDS
Spo25758.1.CDS.5Spo25758.1.CDS.5CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo25758.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25758.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25758.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25758.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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