Spo25802.1 (mRNA) | SpinachBase

Overview


Name	Spo25802.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC03g49450D protein
Location	chr4 : 11580961 .. 11582785 (+)
Sequence length	360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAGTATGGTGGTCCCTTTTGGGGGCGGCTATTCCAGCTGTTTTTGCAGGGCAAGCGTGGAGGATTAAGAGAAGGCGGGATGAGGAGCAGAGAATTAAGAGTGCAAGAGGCCGAGAAAAGAGTTCAGACGACATTTTCGTTTGTGAAAGGATTTGCACCTCAAAGCGCATGTTAAAAAAGGTTGGTGCTTTCTCTAAGGATCCAATCCCAGATACTTGTGTCACTGTCTGCGGAGTCTCAGAGCTTGATGCATGCACTGATGCCTGTGCGCGGACTGTTTGTGTCAACCAGCATCATGTTCCGAACTGGAATGATGTTTGTCTTCGAAGATGTCAAAGTGAATGTCTTAAGCTCTCTGCATCTCGTGCTTCGTAGGACATAGGAACCATTGGGTTTTGTTTCTGAAAAATTAAGGTGGGTGGTAGAAGCAAGAATTGCTGTAAATGTTTGAAAATTCCCATTCAGCAGATTGGTGGCTTGAAACATTGAAGCTTTTTTGTTCTCTATTATTCTTTTCTTTAAAATTTTGAATAATGTAGTGCACCAAATAGATGCTTCATTCTATTTAAAATTGCTTATGTGCAGAAGTAATTAACTGTGATTATGTCCTCCACTGGTAGATAACAGGGATGTCAATTGGGCGGATGCGGATGTAGGTCCCTCCATTCCCATTCCCATCCCCACCAAAATTTTCATCCCCTTCCCCGCCCCATCACCCATGGCGGGTACAAAATTCATCCCCATTTTCGCCCCAACGGGTGTAAGCTAAAATTCATCCCTGCCCCACCACCCAACTGGGTATCCATCCCCGCCTTATCCCCGCTACATACCCGTGCTAATACCCGCCTAATTTTTCTTATTTAGCAAACATTTTCCATATATACGGAGTAATCAAAGTTAACTATAGAAAACAATACCTTATGACTAAAGTAACCTATATAATAGAAAAAAATACTCGTCATAACAAAAAATCCAAACAAAAAACATAAAAATCTCACCTAAAGATGCAAATAAATCCAAACTCACCCAATCACCCATGGAGGGTATGAAGCGGGGCGAATGGGGATGGGGCGGGGCGAGTGGGGATGAGGCGGGGCGGGCGGGGATGGGGCGAGTTCAACACAAAATCCACGCCCGCCCCATCACCCATGGCGGGTACGATTTTTTTACCCATCACCCGCCAAACCTACCTCCATCCCCGCCTACTTGGGGCGGATGCGGGGCGGGTCTCCCACGAAACCCGCCCCACTGACATCCCTAGGTAGATTCCTGTAACGCCAATGATAAAGAGGTGTTGCTTCATTTGAAGCGCGGAATTATGTATCCTTCTAATTTACATGCAATTATGAAAAGGGATAGTTAAAAACTTAAAGCCCACTGGGCCATTTGCAATCTAGGCCCAATTCCACAAAGGCCCACTTTAAAAATGAGATGTTTACGGACAATTTGGATCAGATTTCTTTCCCTGAAAATGACAACAGAAATTAATGGTTGCAAATAATTTGGCATCATCAATTAGAGAGAAATAAAGAGATTGGAACGAAAATTATGTCAATATTTTGTGGATGAAAACAAAAACTCAATATCCAAATTATGAGGAAATCTAGTTTGAAGGTGATTATTTTGTTCCCTTTATAGGGGAAGATGAGAAGTTTGATAAAGGAACAAAAATGTTGATAATCCATAATACAAAGAGTCATATTTTAGCGAAGTGCCATGTATTATATTTTCGCTTGTAATTGCATTTGGTATCAAAATATGCCATATTCTAATTTCTTAGGAGTTAGGACCGTCTGGCCGTGGAACATATAATATGTGA

mRNA sequence

ATGGTGGAAGTATGGTGGTCCCTTTTGGGGGCGGCTATTCCAGCTGTTTTTGCAGGGCAAGCGTGGAGGATTAAGAGAAGGCGGGATGAGGAGCAGAGAATTAAGAGTGCAAGAGGCCGAGAAAAGAGTTCAGACGACATTTTCGTTTGTGAAAGGATTTGCACCTCAAAGCGCATGTTAAAAAAGGTTGGTGCTTTCTCTAAGGATCCAATCCCAGATACTTGTGTCACTGTCTGCGGAGTCTCAGAGCTTGATGCATGCACTGATGCCTGTGCGCGGACTGTTTGTGTCAACCAGCATCATGTTCCGAACTGGAATGATGAGTTAGGACCGTCTGGCCGTGGAACATATAATATGTGA

Coding sequence (CDS)

ATGGTGGAAGTATGGTGGTCCCTTTTGGGGGCGGCTATTCCAGCTGTTTTTGCAGGGCAAGCGTGGAGGATTAAGAGAAGGCGGGATGAGGAGCAGAGAATTAAGAGTGCAAGAGGCCGAGAAAAGAGTTCAGACGACATTTTCGTTTGTGAAAGGATTTGCACCTCAAAGCGCATGTTAAAAAAGGTTGGTGCTTTCTCTAAGGATCCAATCCCAGATACTTGTGTCACTGTCTGCGGAGTCTCAGAGCTTGATGCATGCACTGATGCCTGTGCGCGGACTGTTTGTGTCAACCAGCATCATGTTCCGAACTGGAATGATGAGTTAGGACCGTCTGGCCGTGGAACATATAATATGTGA

Protein sequence

MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWNDELGPSGRGTYNM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25802	Spo25802	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25802.1	Spo25802.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25802.1.exon.1	Spo25802.1.exon.1	exon
Spo25802.1.exon.2	Spo25802.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25802.1.CDS.1	Spo25802.1.CDS.1	CDS
Spo25802.1.CDS.2	Spo25802.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo25802.1 vs. NCBI nr
Match: gi|902179995|gb|KNA09449.1| (hypothetical protein SOVF_153510 [Spinacia oleracea])

HSP 1 Score: 226.5 bits (576), Expect = 2.500e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 107

[Close]

BLAST of Spo25802.1 vs. NCBI nr
Match: gi|731344273|ref|XP_010683322.1| (PREDICTED: uncharacterized protein At5g64816 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 218.4 bits (555), Expect = 6.800e-54
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAV AGQA+RIKRRRDEEQRIK+ARGREKSSDDIFVCER+CTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 107

[Close]

BLAST of Spo25802.1 vs. NCBI nr
Match: gi|565435343|ref|XP_006281261.1| (hypothetical protein CARUB_v10027305mg, partial [Capsella rubella])

HSP 1 Score: 206.8 bits (525), Expect = 2.000e-50
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSL+GAA+PA+ AGQAWRIK+RR EE+RIKSARGREKSSD+IFVCER+CTSKRML
Sbjct: 25  MVEVWWSLIGAAVPALVAGQAWRIKKRRGEEERIKSARGREKSSDEIFVCERVCTSKRML 84

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQH V NWND
Sbjct: 85  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWND 131

[Close]

BLAST of Spo25802.1 vs. NCBI nr
Match: gi|970021089|ref|XP_015071801.1| (PREDICTED: uncharacterized protein At5g64816 [Solanum pennellii])

HSP 1 Score: 206.5 bits (524), Expect = 2.700e-50
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPA+ AGQA+RIKR   EEQRIKSARGREKS+DDIFVCER+CTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAIVAGQAYRIKRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTC+TVCGVSELDAC+DACARTVCVNQH VPNWND
Sbjct: 61  KKVGAFSKDPIPDTCITVCGVSELDACSDACARTVCVNQHQVPNWND 107

[Close]

BLAST of Spo25802.1 vs. NCBI nr
Match: gi|460383511|ref|XP_004237465.1| (PREDICTED: uncharacterized protein At5g64816 [Solanum lycopersicum])

HSP 1 Score: 206.5 bits (524), Expect = 2.700e-50
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPA+ AGQA+RIKR   EEQRIKSARGREKS+DDIFVCER+CTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAIVAGQAYRIKRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTC+TVCGVSELDAC+DACARTVCVNQH VPNWND
Sbjct: 61  KKVGAFSKDPIPDTCITVCGVSELDACSDACARTVCVNQHQVPNWND 107

[Close]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_153510 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.700e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 107

[Close]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4P0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155120 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.700e-54
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAV AGQA+RIKRRRDEEQRIK+ARGREKSSDDIFVCER+CTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 107

[Close]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Match: R0GBX8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10027305mg PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.400e-50
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSL+GAA+PA+ AGQAWRIK+RR EE+RIKSARGREKSSD+IFVCER+CTSKRML
Sbjct: 25  MVEVWWSLIGAAVPALVAGQAWRIKKRRGEEERIKSARGREKSSDEIFVCERVCTSKRML 84

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQH V NWND
Sbjct: 85  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWND 131

[Close]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Match: A0A061DJX8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.900e-50
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAV AGQA+R+K+RR EEQRIKSARGREKSSDDIFVCER+CTSKRML
Sbjct: 40  MVEVWWSLLGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRML 99

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPI DTCVTVCGVSELDAC+DACARTVCVNQH VPNWND
Sbjct: 100 KKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWND 146

[Close]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Match: A0A061DJ25_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.900e-50
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSLLGAAIPAV AGQA+R+K+RR EEQRIKSARGREKSSDDIFVCER+CTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPI DTCVTVCGVSELDAC+DACARTVCVNQH VPNWND
Sbjct: 61  KKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWND 107

[Close]

BLAST of Spo25802.1 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.700e-52
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSL+GAA+PA+ AGQAWRIK+R  EE+RIKSARGREKSSD+IFVCER+CTSKRML
Sbjct: 1   MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQH V NWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWND 107

[Close]

BLAST of Spo25802.1 vs. TAIR (Arabidopsis)
Match: AT5G64816.1 (unknown protein)

HSP 1 Score: 205.3 bits (521), Expect = 2.100e-53
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1


		  
Query: 1   MVEVWWSLLGAAIPAVFAGQAWRIKRRRDEEQRIKSARGREKSSDDIFVCERICTSKRML 60
           MVEVWWSL+GAA+PA+ AGQAWRIK+R  EE+RIKSARGREKSSD+IFVCER+CTSKRML
Sbjct: 1   MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRML 60

Query: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWND 108
           KKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQH V NWND
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWND 107

The following BLAST results are available for this feature:

BLAST of Spo25802.1 vs. NCBI nr
BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
BLAST of Spo25802.1 vs. ExPASy Swiss-Prot
BLAST of Spo25802.1 vs. TAIR (Arabidopsis)

BLAST of Spo25802.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902179995\|gb\|KNA09449.1\|	2.5e-56	100.	hypothetical protein SOVF_1535...	[more]
gi\|731344273\|ref\|XP_010683322.1\|	6.8e-54	96.2	PREDICTED: uncharacterized pro...	[more]
gi\|565435343\|ref\|XP_006281261.1\|	2.0e-50	88.7	hypothetical protein CARUB_v10...	[more]
gi\|970021089\|ref\|XP_015071801.1\|	2.7e-50	89.7	PREDICTED: uncharacterized pro...	[more]
gi\|460383511\|ref\|XP_004237465.1\|	2.7e-50	89.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo25802.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QQA8_SPIOL	1.7e-56	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4P0_BETVU	4.7e-54	96.2	Uncharacterized protein OS=Bet...	[more]
R0GBX8_9BRAS	1.4e-50	88.7	Uncharacterized protein (Fragm...	[more]
A0A061DJX8_THECC	1.9e-50	91.5	Uncharacterized protein isofor...	[more]
A0A061DJ25_THECC	1.9e-50	91.5	Uncharacterized protein isofor...	[more]

BLAST of Spo25802.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
Y5486_ARATH	3.7e-52	87.8	Uncharacterized protein At5g64...	[more]

BLAST of Spo25802.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G64816.1	2.1e-53	87.8	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35548	FAMILY NOT NAMED	coord: 2..107 score: 4.3