Spo25826.1 (mRNA)

Overview
NameSpo25826.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00853 : 112760 .. 114078 (+)
Sequence length291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCGTATACGAATGTTCAGGATTGAAATCTCCAGTTGGTGGATGTAGCACCCATGAAAAAGCTTTGTTTCCGAAACATGAAAATAAATTTTCCATCACTTGATTACGTCCATTAGGCTGCATGAACGTTCAAAAATATATTAAGATGTAAAAACAACATGAGCTAATTAATTGAAAATTTTATGTTGTCAGAGTATTAGATTGAAACCTGTTGAAGTACTGATTTTATTTCAGTAGCTAAACATATCAATTTGGTTCTTAAGTTATTTATATTAAATATTGTTGTAATATTGATATTGCTGATATTTGATTTTTTCTATGAGAATGAAATTTAAACGCTAATTTTTCCAATTACCTGTTCCAATTTGTCTCCTTTCAATATCATTTTTTAAAATTCAGTAACAAACTCGTAAATTAAAAACCACGTATTGTACGAAGTATATTGGAGAGTGAAATGTAATTTATCACTAATTAATTTTCTTTTTTTAAAAAAGATAATTTTTAAGTTGTTATTTAGATTATAATCGAAATTTTCCTTTCCGCTAAAACAAAGTTTTCATTTAAAATATAAAATAAATATTTTATTTTGATGCTTTTTGTTTTTCTTTTCTGCTATTACAAAATTTTTAATTAAAAATAAAATAAATATTTTATTAGAATGACTTTTAATTTTCTTATCAAGTTAATAAGAGATACTAATTTTTGTTTAATAAAGTTTGGAAAATGCCTCCTATTTCGTACTGAAAGCCCAAATATCAAACCCTATTTCATTTTAACCCTATTTCATTTTGTTGCTTACTCTTATCCCCTATCTCCCCGCCGCTCTCTTTCTCTCTCTTTAAACGTTTTTCAGCTCCTTTCTCAACTCCTTTCTCTCCGCCGTTCTCTTATCTCTATCTTAAATCTATTTGAGTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGGTTATTTAGGGTTTGGTTTTTGGAATAATGGTTGCTTAATTAATTTTAGTTGGGGTTCGTTTTCTTAAAAATTGCATAACTAATTTTTTTGCACTCTTAATTTGCATGTCGTTGGAGAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

mRNA sequence

ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

Coding sequence (CDS)

ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

Protein sequence

MHPYAQSMRNTCITNLCFSSYLSFLSLTFHFADFLLFISSKNGDSTYKFPRTLKIFTKNGEYRKVRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25826Spo25826gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25826.1Spo25826.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25826.1.exon.1Spo25826.1.exon.1exon
Spo25826.1.exon.2Spo25826.1.exon.2exon
Spo25826.1.exon.3Spo25826.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25826.1.CDS.1Spo25826.1.CDS.1CDS
Spo25826.1.CDS.2Spo25826.1.CDS.2CDS
Spo25826.1.CDS.3Spo25826.1.CDS.3CDS


Homology
[Close]
BLAST of Spo25826.1 vs. NCBI nr
Match: gi|902074337|gb|KNA03032.1| (hypothetical protein SOVF_213040 [Spinacia oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 65 VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 97
          VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Sbjct: 2  VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 33
[Close]
BLAST of Spo25826.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q776_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_213040 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.800e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 65 VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 97
          VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Sbjct: 2  VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 33
The following BLAST results are available for this feature:
BLAST of Spo25826.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902074337|gb|KNA03032.1|1.4e-9100.hypothetical protein SOVF_2130... [more]
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BLAST of Spo25826.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q776_SPIOL9.8e-10100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25826.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25826.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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