Spo25918.1 (mRNA)

Overview
NameSpo25918.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 40817320 .. 40818248 (-)
Sequence length545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACAGCCAGAATTGGAAATCTCTCTCCAATATAAAAAAAGAGAAAATATAGCGTGGAAGTTACGAAGTGCAGAACATTTCTTTCTGTCAAAAACGTGTAGCCGCAAATATACTCCATAAACTCAAAAAGATATTGAGCGACCAATTTCTTCTTGGTCGAGATCCGGCGCTGTCCGGATTTCGCCCATTTTCAACCTTTTTCTTTCCAATTTCATTAGAATTCTATTCAGTTCAACAAGGAAATCAACAATGAGAAGATCCAGCGGTCTTGTGGCATCGATTCTTGCCGCATCTGCCTTCTCACTTTTCACATTTCCTTCACAATTTCAGGTAATTTTCCCCAATTTAATTTTCTTTTTAGGGCTGTTCTTCAATTATTCTCGTTTTCATGAATTTATGAATTTTAGGGTTTTGATTTATCGCAGGAAGTTCCGCCTTATGGATCGCAATCATCGTCAATTGGGAAGGAGAAATTTTCTCCCAGATTCGACGGGTTAAGGTTCATCGAAACCCTAATTACTGCTCATAGATGATGAAACCCTAATTTTCGATGGGATTAACCTGGTTAATTAGGTGATAAATGATTCTTATCAATTTTTGTCCGATGATTTTCTGAGATGTATTCAAATTGGCTCTCTTTGGGCGGCTTTAAAGATGTTGTAATGTTTCTCTTCTGATTTTAGTTCTGTAAAGATTGCAACTTTAATTTGGGTATGGGTTCAAAAACCCTTAATTTCAAGTTTGAACTATGGGTATGGGTTATTCAAGTTTTGCTCTTCTACTAACAGTTTCCGTGTGTTGGGTGTTGACACCCCTCGTCGACTGAGACGAAGTAGCATCACCCAAGTAATCGCCCCACATTGTTCACCTAAGTGTGGGAACATCACCCTTCCTCACCCGTTTGGTGTTGAAATGGTTTTACTTTGA

mRNA sequence

AAAAACAGCCAGAATTGGAAATCTCTCTCCAATATAAAAAAAGAGAAAATATAGCGTGGAAGTTACGAAGTGCAGAACATTTCTTTCTGTCAAAAACGTGTAGCCGCAAATATACTCCATAAACTCAAAAAGATATTGAGCGACCAATTTCTTCTTGGTCGAGATCCGGCGCTGTCCGGATTTCGCCCATTTTCAACCTTTTTCTTTCCAATTTCATTAGAATTCTATTCAGTTCAACAAGGAAATCAACAATGAGAAGATCCAGCGGTCTTGTGGCATCGATTCTTGCCGCATCTGCCTTCTCACTTTTCACATTTCCTTCACAATTTCAGGAAGTTCCGCCTTATGGATCGCAATCATCGTCAATTGGGAAGGAGAAATTTTCTCCCAGATTCGACGGGTTAAGTTTCCGTGTGTTGGGTGTTGACACCCCTCGTCGACTGAGACGAAGTAGCATCACCCAAGTAATCGCCCCACATTGTTCACCTAAGTGTGGGAACATCACCCTTCCTCACCCGTTTGGTGTTGAAATGGTTTTACTTTGA

Coding sequence (CDS)

ATGAGAAGATCCAGCGGTCTTGTGGCATCGATTCTTGCCGCATCTGCCTTCTCACTTTTCACATTTCCTTCACAATTTCAGGAAGTTCCGCCTTATGGATCGCAATCATCGTCAATTGGGAAGGAGAAATTTTCTCCCAGATTCGACGGGTTAAGTTTCCGTGTGTTGGGTGTTGACACCCCTCGTCGACTGAGACGAAGTAGCATCACCCAAGTAATCGCCCCACATTGTTCACCTAAGTGTGGGAACATCACCCTTCCTCACCCGTTTGGTGTTGAAATGGTTTTACTTTGA

Protein sequence

MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLSFRVLGVDTPRRLRRSSITQVIAPHCSPKCGNITLPHPFGVEMVLL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25918Spo25918gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25918.1Spo25918.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25918.1.utr5p.1Spo25918.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25918.1.CDS.3Spo25918.1.CDS.3CDS
Spo25918.1.CDS.2Spo25918.1.CDS.2CDS
Spo25918.1.CDS.1Spo25918.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25918.1.exon.3Spo25918.1.exon.3exon
Spo25918.1.exon.2Spo25918.1.exon.2exon
Spo25918.1.exon.1Spo25918.1.exon.1exon


Homology
[Close]
BLAST of Spo25918.1 vs. NCBI nr
Match: gi|902227681|gb|KNA20793.1| (hypothetical protein SOVF_048860 [Spinacia oleracea])

HSP 1 Score: 102.4 bits (254), Expect = 4.400e-19
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 

		  

Query: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLSF 54
          MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGL F
Sbjct: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLRF 53
[Close]
BLAST of Spo25918.1 vs. NCBI nr
Match: gi|870861192|gb|KMT12500.1| (hypothetical protein BVRB_5g104260 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-11
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 

		  

Query: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLSF 54
          M+RSSG++AS LAA+ F  F++ SQFQ  P YG QSSSIGKEKFSPRFDGL F
Sbjct: 1  MKRSSGVLASFLAATTFPFFSYSSQFQVKPSYGKQSSSIGKEKFSPRFDGLRF 53
[Close]
BLAST of Spo25918.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMS7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_048860 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.100e-19
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 

		  

Query: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLSF 54
          MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGL F
Sbjct: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLRF 53
[Close]
BLAST of Spo25918.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFG9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104260 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.100e-11
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 

		  

Query: 1  MRRSSGLVASILAASAFSLFTFPSQFQEVPPYGSQSSSIGKEKFSPRFDGLSF 54
          M+RSSG++AS LAA+ F  F++ SQFQ  P YG QSSSIGKEKFSPRFDGL F
Sbjct: 1  MKRSSGVLASFLAATTFPFFSYSSQFQVKPSYGKQSSSIGKEKFSPRFDGLRF 53
The following BLAST results are available for this feature:
BLAST of Spo25918.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902227681|gb|KNA20793.1|4.4e-1998.1hypothetical protein SOVF_0488... [more]
gi|870861192|gb|KMT12500.1|4.4e-1169.8hypothetical protein BVRB_5g10... [more]
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BLAST of Spo25918.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RMS7_SPIOL3.1e-1998.1Uncharacterized protein OS=Spi... [more]
A0A0J8CFG9_BETVU3.1e-1169.8Uncharacterized protein OS=Bet... [more]
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BLAST of Spo25918.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25918.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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