Spo25951.1 (mRNA)

Overview
NameSpo25951.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 41908905 .. 41910035 (+)
Sequence length762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATAAATACAGATCAAAACATGCTTAAATTCAAGCACATTATTCACAGATCAGAGCTATCAAAGATCTATCAATTAGAGAGCTAATTAAGTAGTTAGCCACCAAATTTGGTAATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTTTACTCTCCTTTCATTTCCATAATTATACTTTACATATGCTTTTCACGTATACTCTTTGATCTACATTAAACTTCTGATTTTGTGTTCAATTACATGAAGCTAATCATCCTACTTGAGAAATGCTAAACCGTTTTAATCTAATTAATTTTTGTACTTAAAATGCATGTGAACCTAAATGTTCAATTGGCACATTATATTTTAAATTCATACATATATTTTTTTAGTCGAAGGTATTCTAACTTTGACATTAATTTTTATCTATTCACTTAAAATAGTATTTAGGCCCCATTTTTTTTTCTTTTTCTAGTGGATACTTATACCCCTTTTGGTTCACCTTATTTTTCCTGATCTGATGAACTAACACAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGAGCCCTACGCCAAATGTTGTAATTCTTGCCTTGTTGAGCCCGTCCATGGATTCTATTATTGCTCTTGATCAACGGATCTTCCCGTGTCTTGATTAATTTTAACCTAATGTGTGTTGGGTTGGTTTGTTCTCGTATGTTTAAGATAAGTGAGTTATTTTTTCCTTTTAATTTTACATAAGATGAGAGGCTTTCAAGTTCATATGCCTCGTGTTAATCTTATTCATTTACCATTCTTGTATTTTATGTGAGATATTTTGATTTGCAAATGAATATTAAGTATTTATTATAGGTAAATTAGGAATTTATTTTAATGAATAGATATGAGTTTATGTGAGAAATTGTGGCATAGCCTCATAATATTATGCTAAATAATTTTAATTTTTCTTTCTTCT

mRNA sequence

CTATAAATACAGATCAAAACATGCTTAAATTCAAGCACATTATTCACAGATCAGAGCTATCAAAGATCTATCAATTAGAGAGCTAATTAAGTAGTTAGCCACCAAATTTGGTAATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGAGCCCTACGCCAAATGTTGTAATTCTTGCCTTGTTGAGCCCGTCCATGGATTCTATTATTGCTCTTGATCAACGGATCTTCCCGTGTCTTGATTAATTTTAACCTAATGTGTGTTGGGTTGGTTTGTTCTCGTATGTTTAAGATAAGTGAGTTATTTTTTCCTTTTAATTTTACATAAGATGAGAGGCTTTCAAGTTCATATGCCTCGTGTTAATCTTATTCATTTACCATTCTTGTATTTTATGTGAGATATTTTGATTTGCAAATGAATATTAAGTATTTATTATAGGTAAATTAGGAATTTATTTTAATGAATAGATATGAGTTTATGTGAGAAATTGTGGCATAGCCTCATAATATTATGCTAAATAATTTTAATTTTTCTTTCTTCT

Coding sequence (CDS)

ATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGA

Protein sequence

MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNTIEDQFEATNNKKKEACIMYNKRLSL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25951Spo25951gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25951.1Spo25951.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25951.1.exon.1Spo25951.1.exon.1exon
Spo25951.1.exon.2Spo25951.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25951.1.utr5p.1Spo25951.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25951.1.CDS.1Spo25951.1.CDS.1CDS
Spo25951.1.CDS.2Spo25951.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25951.1.utr3p.1Spo25951.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25951.1 vs. NCBI nr
Match: gi|902234541|gb|KNA23483.1| (hypothetical protein SOVF_024350 [Spinacia oleracea])

HSP 1 Score: 162.2 bits (409), Expect = 4.100e-37
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 

		  

Query: 1  MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60
          MERVIMFNYMKLIILL FVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT
Sbjct: 1  MERVIMFNYMKLIILLAFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60

Query: 61 IEDQFEATNNKKKEACIMYNKRLSL 86
          IEDQFEATNNKKKEACIMYNKRLSL
Sbjct: 61 IEDQFEATNNKKKEACIMYNKRLSL 85
[Close]
BLAST of Spo25951.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024350 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.900e-37
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 

		  

Query: 1  MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60
          MERVIMFNYMKLIILL FVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT
Sbjct: 1  MERVIMFNYMKLIILLAFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60

Query: 61 IEDQFEATNNKKKEACIMYNKRLSL 86
          IEDQFEATNNKKKEACIMYNKRLSL
Sbjct: 61 IEDQFEATNNKKKEACIMYNKRLSL 85
The following BLAST results are available for this feature:
BLAST of Spo25951.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902234541|gb|KNA23483.1|4.1e-3798.8hypothetical protein SOVF_0243... [more]
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BLAST of Spo25951.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RVJ4_SPIOL2.9e-3798.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25951.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25951.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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