Spo25983.1 (mRNA)

Overview
NameSpo25983.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionRING/U-box superfamily protein
Locationchr6 : 41244843 .. 41247501 (+)
Sequence length744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTATGTTTTTCTTTTATGCCTCAGGTTTTAATTTTCAATTAATTTGGAAAAATCTTCACATAGACGTTGTTAATTGTTTATTTGATGGGCACATACATGGTTAGTTGCTAATTTATCTTCCACCCTTGTGTCAACTGTTCAGTAGTAGGTATTGAGTAGCAACTCGTTCCTCTGCTTTGGTAGTTTGGTTTCCTTAATCTGTAAAATGGAAGAATTTCTGTAATTGAGTTAAACTAATAATTCAGGAAGTCTCCATTGCATGTATAAGTGATCTGTTTCAATAAAGCATATGAAAAAATAAACTAAACAAAATGTTGCAGTTCTGCTTTTCCACTTGCATGATTCAATAGATCATGTTATAGGTTCATTATTGACTTTGTTCATACACATTCTGTGCACAAATTTAAGGTGCCATTATATGCTTGTTTAAGTTAGCTTGAATGTATATGAACTGTTTGGGGCACCTGGCACCAACACTTAATTTAGGATATTTATAACAGTATAATTTGTGAGTGTGTTGAAATATATATGGGACTGGTTCGTAATGTAGTATGTGTTTATATTTTTATAACGGTTTTGAGGACATTAGTGTTACGAGCACATGTGCATTCTTTGTGTGCTTGTAAATAATTGATCTTTTCAAATTCAATCTGATCATTTCGTTCCATAAGTTTTGTTTTTTACTTATACAAAATGACTTAGGCTTTCCATTTGGCGTCAACGTATTACGTAGACTCAAGATTAAACCTTTATGAAAAAACTTGTGTCCGTAGGAAATAATCCTCTATTCAAAAGAATACAGGAGATTTGTTATGTGTTGTGATATTGCTTTTGAATCTTCTTGCTTGATTTTTTGTTCAAATTTGTACGAATTGCTTGACTTTGGCTTAATTGTTTCAAAGGCCATACTCGGTATATTTTTCTGTAGCCTGCTAAGTAATTGTATGCATGCTACGATTTTGTTTCTTGCAAAACCCTATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTGTGGAAGTTCTAGAATTAATTTCTCATGTTAGATGACTTAGATCCCTTTAAAGAGTTGAAGTTGACTTGAAGCAATTAGATGACTTAGATACCTTTGATAATGTTCCCTAATTTGACTTGAATTCGGTTGATGTAAGGGTGTTCTTACCCTATGCATTTAAGGGGTTTAATAGTGTGTTGACTTTGCTAGAGTTCTGCCCTGCTTCGGAGCTGATGAATGATGTCAATTAATTTGCTTCTTAAACTCTGTAGTTGTAGCAAAAGAAGTTTCAGGGTGCTCATTACTCATTAGGTTCGAAACGATCATGATCGAAATTCTGGTAGGGGGTTCGATTTGAATTTGTGTATTGGACTTCTTTCTAGTGATCTACCGAACTCAGAAAATAAAAAGTTCTGGACCTATGTTTTCTACATTCTATATACGATTATGTTTAGTTTCTTCCGATCTCAGTTTACAATATTGAATTTAGGTTGCAATAATTTATGCTTGCTTAAGTTAGCTGTAAAACGTTTGAAAGCCCTATAAATTATCCACGGGTGAACTGAAACTTAATAATATAGGATGTTTTGGTTAATAGTTCAATGTTGACGGGTTTTAGAATATAATATCTGGAGAAGTTAATTAGCAGCGTTGGAGTCCTGAAGTGAATTTTATGCATAAAGTAGTAGATTTTATCTATGCGTTGCAAAACATTTGGTGTTTCATCCCTTAGAAACCGACTGACATTTATTTTAAATTAAGCGATCCTAATGATTATCCTAGCTTATTTTTACAGTAGCAATTATCCGATAATATTTAACAAAAATCTCTATGGCTTAATCTATAGCTTATCATGTGAATTATTCAGTATTAGATTTGGAGTGTGAATTTTTGATATTTTATTTTTGGTACAGGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTCTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAATGTAAAAAACTATGTATGTTGCATTGTACATGTATAGATAAGTTTTATCTTTTAATTATATATTTTAATATACTAATTATTGACTCTGTGTTATATACATAGTATTTGTATGAGTTTTTGTAAAGCCGTATTTTGTGATTTCAACCCATCATGTAAGAAT

mRNA sequence

ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTCTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAATGTAAAAAACTATGTATGTTGCATTGTACATGTATAGATAAGTTTTATCTTTTAATTATATATTTTAATATACTAATTATTGACTCTGTGTTATATACATAGTATTTGTATGAGTTTTTGTAAAGCCGTATTTTGTGATTTCAACCCATCATGTAAGAAT

Coding sequence (CDS)

ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAG

Protein sequence

MPIVSLMSLAHIISFTVASILLTQLGISVGDDGHLYGHDYFHGHELIIQVSLLLGIILIIVLIFLIRRFFKKRQQHSTPPSIQLPNVPPSQVPETSTNLSNTLPETYVLRRLPEEIYRSFQVDTYSTERCNDFSHIDCMICNFAFVDGEDLCILPVCRHVFHSKCT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25983Spo25983gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25983.1Spo25983.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25983.1.exon.1Spo25983.1.exon.1exon
Spo25983.1.exon.2Spo25983.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25983.1.CDS.1Spo25983.1.CDS.1CDS
Spo25983.1.CDS.2Spo25983.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25983.1.utr3p.1Spo25983.1.utr3p.1three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo25983.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 137..165
score: 2.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 136..165
score: 3.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 125..165
score: 2.4

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding