Spo26126.1 (mRNA) | SpinachBase

Overview


Name	Spo26126.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I P700 chlorophyll a apoprotein A2 (1.97.1.12) (PSI-B) (PsaB)
Location	SpoScf_16137 : 72 .. 440 (-)
Sequence length	369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

mRNA sequence

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

Coding sequence (CDS)

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

Protein sequence

MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo26126	Spo26126	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo26126.1	Spo26126.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26126.1.CDS.1	Spo26126.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26126.1.exon.1	Spo26126.1.exon.1	exon

Homology

[Close]

BLAST of Spo26126.1 vs. NCBI nr
Match: gi|1002165408|ref|YP_009235539.1| (PsaB (chloroplast) [Cynanchum wilfordii])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. NCBI nr
Match: gi|657302859|ref|YP_009041086.1| (photosystem I P700 chlorophyll a apoprotein A2 [Rhazya stricta])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. NCBI nr
Match: gi|404474524|ref|YP_006666029.1| (photosystem I P700 apoprotein A2 (chloroplast) [Capsicum annuum])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. NCBI nr
Match: gi|229577753|ref|YP_002836089.1| (photosystem I P700 apoprotein A2 [Megaleranthis saniculifolia])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. NCBI nr
Match: gi|671743318|ref|YP_009050848.1| (photosystem I P700 apoprotein A2 (chloroplast) [Camellia pubicosta])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A0S1EH81_9LAMI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Plantago media GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A0U2EU00_9APIA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Fatsia japonica GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: D3WD75_9MAGN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Berberidopsis corallina GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A076FJ31_9DIPS (Photosystem I P700 apoprotein A2 (Fragment) OS=Viburnum lutescens GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A076FHH4_9DIPS (Photosystem I P700 apoprotein A2 (Fragment) OS=Viburnum clemensae GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_ILLOL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Illicium oligandrum GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_LIRTU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Liriodendron tulipifera GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_CALFG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Calycanthus floridus var. glaucus GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_BUXMI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Buxus microphylla GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_SOLBU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Solanum bulbocastanum GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 267.7 bits (683), Expect = 3.500e-72
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1

		  
Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123

[Close]

BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 90.9 bits (224), Expect = 5.900e-19
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1

		  
Query: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLWTSGNLF 67
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQ +IIFLW SG  F
Sbjct: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 91

Query: 68  HVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALG 112
           H A   N+E+W+ DP H+ P A  +W P  GQ  +     GG  G
Sbjct: 92  HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG 134

The following BLAST results are available for this feature:

BLAST of Spo26126.1 vs. NCBI nr
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
BLAST of Spo26126.1 vs. TAIR (Arabidopsis)

BLAST of Spo26126.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|1002165408\|ref\|YP_009235539.1\|	4.5e-69	99.1	PsaB (chloroplast) [Cynanchum ...	[more]
gi\|657302859\|ref\|YP_009041086.1\|	4.5e-69	99.1	photosystem I P700 chlorophyll...	[more]
gi\|404474524\|ref\|YP_006666029.1\|	4.5e-69	99.1	photosystem I P700 apoprotein ...	[more]
gi\|229577753\|ref\|YP_002836089.1\|	4.5e-69	99.1	photosystem I P700 apoprotein ...	[more]
gi\|671743318\|ref\|YP_009050848.1\|	4.5e-69	99.1	photosystem I P700 apoprotein ...	[more]

BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0S1EH81_9LAMI	3.1e-69	99.1	Photosystem I P700 chlorophyll...	[more]
A0A0U2EU00_9APIA	3.1e-69	99.1	Photosystem I P700 chlorophyll...	[more]
D3WD75_9MAGN	3.1e-69	99.1	Photosystem I P700 chlorophyll...	[more]
A0A076FJ31_9DIPS	3.1e-69	99.1	Photosystem I P700 apoprotein ...	[more]
A0A076FHH4_9DIPS	3.1e-69	99.1	Photosystem I P700 apoprotein ...	[more]

BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
PSAB_ILLOL	2.8e-71	99.1	Photosystem I P700 chlorophyll...	[more]
PSAB_LIRTU	2.8e-71	99.1	Photosystem I P700 chlorophyll...	[more]
PSAB_CALFG	2.8e-71	99.1	Photosystem I P700 chlorophyll...	[more]
PSAB_BUXMI	2.8e-71	99.1	Photosystem I P700 chlorophyll...	[more]
PSAB_SOLBU	2.8e-71	99.1	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
ATCG00340.1	3.5e-72	98.3	Photosystem I, PsaA/PsaB prote...	[more]
ATCG00350.1	5.9e-19	44.7	Photosystem I, PsaA/PsaB prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	GENE3D	1.20.1130.10		coord: 4..123 score: 1.6
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 8..123 score: 5.4
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 4..123 score: 5.36
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 3..123 score: 2.7
None	No IPR available	PANTHER	PTHR30128:SF4	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 3..123 score: 2.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity