Spo26210.1 (mRNA) | SpinachBase

Overview


Name	Spo26210.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase V subunit 5A
Location	SpoScf_02549 : 34868 .. 38696 (-)
Sequence length	1187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAATAAAAAAAATAAAGTGTAAAAATACATTTGTAACGAAAAAAAATCCATGACAAACTATTTTGGGACGGAAAGGGTAAAGAAAAAAGAATCAAGAGAAAGAGACGCCAGCTCACACTTCTAACGGCTTGAGTTTGAAGACTTTGAACTTTGCCCTCCCGTGCGCTTTCTCTCTCCTCCAAAACCCCTGACACCCCCAACAAAAACCCTGCTACAAATCAACCCGACAACACGATGGAGGTGGACGGCGAGATCAACGGCGAGGCTGTGGGGCGGTGTTTGAGCAGCTTTATAGACGACGGCACAACCGAGAGCCATCGCTACTATTTAGCTCGTAGAACAACGCTGGAGATGCTGAAAGACAGGGGATATATTATCCCCTCTTCCGAAATCAATCAAACTCTTCATGAATTCCGCAGTATTTTTGGCCCTAAACCTGACCTTGATCGCCTCCGTATCGCCTCTGTCCTTCAAGCCGATCAGTCTAAAAGGGTATAAACAAATTTCCTTCCTTTTTCTAAAACCCCTTTTTTTTTGTTAATAATTTTATCATTTTTTGTGAATAATTTGAGTAATTTGGTTTTGAAATTTGTAGGTTTTGTTTAATTTATGTTAATTTGATAGCTTTGTGTTTGATTTATGTTTGATGTGTTTTGTATGTGTTCACTTGTTTTATTGTTTAGTTGCTTGACAATTGACTCATGTGCATTACTTGCATGTGCTATTTATTGTACTTGGATGAGCTTGATGAACCTTCTCCCCATTTCTAAACCCCCATTTTTTTATTAATAAATTTTATCCTTTTTTGTGAATAATTTTAGTAATTGGATTTAGAAATTTGTGGGGTTTGTTTAATTCATGTTAATTTGATAGCTTTGTGTTTGATTTATGTATGATGTGTTTTGTATGTGTTCACTTGTTTATCGTTTAGTTGCTTGACAATTGACTCATGTTGCATTGCTTGCATGTGCTATTTATTGTACTTGGATGAGCTTGGTGAACCTTCTCCCCATTTCCCTTTATGTGTGCGCGCGCCTGTGCTTAAGCGAGTGAGTAGAGAGAGACAGTGAGAGCTACAAAGTGCGTGGACGGGAGTCAATCCCAGGTCTTGTGTACTGAGTCCTAAACCAAGACTTTAATCACTAAGGTAGTCGTTCTCGAATTTTTTATATTATTTTAACTTGTTGAATAAATAGGCGATTGATTAGCTACGGACTATGATGAGTGTTTAATGGGTACCAGCTGGGTATCTGGTGAAGTTTTTGGGAGAATGTAACCAAATTTGTATACTTTTTATATCATTTCACTGAAGATGTACTGATATTGCATGGCCAATTGGTCGACTTGAGAGCTTGGCCATACAATTTTTTTCTAGCAAAAAAGATCTGGTTAAATACTCATCTGCGGTGTGGCATTTTAATTGAATGGAAAATGTGTACTTTTGCAGTTTTGAAAGGGTTTGTATCAGTTTTTGTATGTTTGGTACCTTTGAAGCTGTAGTTGGTGCATATATATATGACTATATGAGTCCATAATTTGATGAGAATGTTGACACTCCAGCTTTCTTGCATGCTTCAATTGGATACAAGTGCATTTGTGTACAAATATATGGGTATATTGAGCAGAGATAATGTATAAGAGCAGAAAATGTGACTTCTGATCTTCTGGAATTGTCGAGTCATTTCCAGTGTTATATTCTTTGTTCCTGAAATAATTCATGAAATTTTTACTTCATTTGTGATTGTAACACTATCTATGTGCAGTAACACTATCTATGTGCAATGAAAATATTCAAACATAGGTCTCTGGGAAATGGGAATGCATTGCCTATCTCCCACTTTCTACGTGCTGTGATTGGCCGTTAAGGTAGATACATATTTAGTATATACTTGTGTACCTGTAGTTGCGTGACTTAAATAGCTGCATTTGTTACTGTTATATCTAATATATTGAACTGGTGAAGCCCTCACTCTCTGCGTTTTGCACTTACCTGTTTCTACTATTAAAATCTGGATAACTCATTTTAATCAGGTTACCTTAATGTCGAATGCAGATCATGGTGATATTCTGTGGGCCTCAGCTAGTCAAAGTGAATACAGTACGTGGCATTGGAGCCCAGATTGTTAACAAAGAAGGTTTGAATGGCTTGATACTGATATTACAAAGTAAAATAACAAGCCAAGCTCAGAGAGCTGTGGATCAATTCCAATTTAAAGTTGAGATATTTCAAGTAAGTTTGTGGAATTATATAATACTAAATGCTAATTTCCCTCGTTGAGTTTCATTCTGTTTCTGGGAGCTCTACATCCTGTTCTGTTGTATAAATTTTTATGACGGGAAGTACTTAAATGGTTAAAGTTTGTTTCAATGAAAATTTTCTCTACCTCATGCTTAACTCCCTAAGTGATGTAAACTTTCTCTGCGTCTTCAGATAACTGACTTGCTCGTGAATATCACGAGTCATGTTTTGAAGCCAAAGCATCAAGTGCTGACTCCTAGGGAGAAAGAAAAGCTCTTGAAGAAATACAATTTGGAAGAAAAGCAGGTAAGCAGCTTATCAACCGCATATACTATGGATAATAAAATTTGTCATGTACAATATATGTTTTTTGAAATATTATGCATTTTAGCTGTATGTTTGTTTGGTGCAACTGTGTATAGAACACCAGTGATACACATATTATTAGAATTAAGTGGTTCAGTATGAGTCAAGGTCCATTTCGGAATTCCTGAGCCAGTACTCACAAAGTCGCAAACTTCTTTTCGGAGAATATTTATGTTTTTGTTTTGTGGCAAGGATATGTAGAGGAGGATAGGAAGAAGGGTAAGAAATGGATGAACCGATGAAGGGAGGTAAAGAGGGTTGTTTTGAGAGTGAGAGAGAGAATGGCATATACTCCCTCCGTTTCAAAAATAATGGGACACTTAACCTTTTCACGCTTGCCAATATAAATGTTTGGACATTAATGTCTCTAATTTTGTATTCGTAAAAGTTATAAAAAGTTGATATTTTGAAAGTACATATCGAGACGAATCAAACAAGACCTTACACGATTATATTTTTGTTACCCGTAAATGACAAATGATAGTCAAATTGAAATCGTGAATAGTGTCAAATATCAAAGTGTCCCTATTATTTTGAAACAGAAGGAGTAGTCAGCAGTGTGGGCGTGTTAATTCTAATAGTCAATTTCGGCCCTTTTAACTTTTTAAAGCCAATAAAGGATGTTCTAGGAAGTTCTTGTTTCTAGAAGATTTTGGCATTGTTCTTGATCTTTTGTTACTTCGTATGAGGCTTGTCCTGCTGCATCAGTTGAGTGATTGATTGATCACAATCTTGCTTTTTGTTTTCTTTGGTGATCACACGACATCTAATTGCACAATGAGTCTGTTTTTTACTAGAATTTTTCTTCCTTGTTTTTCAGCTTCCAAGAATGTCGATGAAAGATGCAATTGTACGATATTATGGATATGAGAAAGGGCAGGTACTCAAAGTGACTTATAGTGGTGAGATTACCCAATCTCATGTGACTTACCGTTGTGTATCGTAATGGCCTGGCACAAATATCTTAGGCCTTACTGGTTTTAGGCCTAAGTAGTTTAGTCTTGTAACTTTATCGAACTAATAATGTTAAATTTCAGTTCTTGCGCAGTATCATCGTTGTGTATCTTAATGGTATGCAACATTTATGTAGTTTCCCTGTCCTTTCTGTTTTTAGGCCCAGATTAGGTTGGCCTTGTAATTTTATGAAACCAATATTGTTCAATGTTCTGTAATATTATAAATATGAATGTTTCCAGAAACTTTAATGTTGGTTCTTGTCCCT

mRNA sequence

TTTAATAAAAAAAATAAAGTGTAAAAATACATTTGTAACGAAAAAAAATCCATGACAAACTATTTTGGGACGGAAAGGGTAAAGAAAAAAGAATCAAGAGAAAGAGACGCCAGCTCACACTTCTAACGGCTTGAGTTTGAAGACTTTGAACTTTGCCCTCCCGTGCGCTTTCTCTCTCCTCCAAAACCCCTGACACCCCCAACAAAAACCCTGCTACAAATCAACCCGACAACACGATGGAGGTGGACGGCGAGATCAACGGCGAGGCTGTGGGGCGGTGTTTGAGCAGCTTTATAGACGACGGCACAACCGAGAGCCATCGCTACTATTTAGCTCGTAGAACAACGCTGGAGATGCTGAAAGACAGGGGATATATTATCCCCTCTTCCGAAATCAATCAAACTCTTCATGAATTCCGCAGTATTTTTGGCCCTAAACCTGACCTTGATCGCCTCCGTATCGCCTCTGTCCTTCAAGCCGATCAGTCTAAAAGGATCATGGTGATATTCTGTGGGCCTCAGCTAGTCAAAGTGAATACAGTACGTGGCATTGGAGCCCAGATTGTTAACAAAGAAGGTTTGAATGGCTTGATACTGATATTACAAAGTAAAATAACAAGCCAAGCTCAGAGAGCTGTGGATCAATTCCAATTTAAAGTTGAGATATTTCAAATAACTGACTTGCTCGTGAATATCACGAGTCATGTTTTGAAGCCAAAGCATCAAGTGCTGACTCCTAGGGAGAAAGAAAAGCTCTTGAAGAAATACAATTTGGAAGAAAAGCAGCTTCCAAGAATGTCGATGAAAGATGCAATTGTACGATATTATGGATATGAGAAAGGGCAGGTACTCAAAGTGACTTATAGTGGTGAGATTACCCAATCTCATGTGACTTACCGTTGTGTATCGTAATGGCCTGGCACAAATATCTTAGGCCTTACTGGTTTTAGGCCTAAGTAGTTTAGTCTTGTAACTTTATCGAACTAATAATGTTAAATTTCAGTTCTTGCGCAGTATCATCGTTGTGTATCTTAATGGTATGCAACATTTATGTAGTTTCCCTGTCCTTTCTGTTTTTAGGCCCAGATTAGGTTGGCCTTGTAATTTTATGAAACCAATATTGTTCAATGTTCTGTAATATTATAAATATGAATGTTTCCAGAAACTTTAATGTTGGTTCTTGTCCCT

Coding sequence (CDS)

ATGGAGGTGGACGGCGAGATCAACGGCGAGGCTGTGGGGCGGTGTTTGAGCAGCTTTATAGACGACGGCACAACCGAGAGCCATCGCTACTATTTAGCTCGTAGAACAACGCTGGAGATGCTGAAAGACAGGGGATATATTATCCCCTCTTCCGAAATCAATCAAACTCTTCATGAATTCCGCAGTATTTTTGGCCCTAAACCTGACCTTGATCGCCTCCGTATCGCCTCTGTCCTTCAAGCCGATCAGTCTAAAAGGATCATGGTGATATTCTGTGGGCCTCAGCTAGTCAAAGTGAATACAGTACGTGGCATTGGAGCCCAGATTGTTAACAAAGAAGGTTTGAATGGCTTGATACTGATATTACAAAGTAAAATAACAAGCCAAGCTCAGAGAGCTGTGGATCAATTCCAATTTAAAGTTGAGATATTTCAAATAACTGACTTGCTCGTGAATATCACGAGTCATGTTTTGAAGCCAAAGCATCAAGTGCTGACTCCTAGGGAGAAAGAAAAGCTCTTGAAGAAATACAATTTGGAAGAAAAGCAGCTTCCAAGAATGTCGATGAAAGATGCAATTGTACGATATTATGGATATGAGAAAGGGCAGGTACTCAAAGTGACTTATAGTGGTGAGATTACCCAATCTCATGTGACTTACCGTTGTGTATCGTAA

Protein sequence

MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo26210	Spo26210	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo26210.1	Spo26210.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26210.1.utr5p.1	Spo26210.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26210.1.CDS.4	Spo26210.1.CDS.4	CDS
Spo26210.1.CDS.3	Spo26210.1.CDS.3	CDS
Spo26210.1.CDS.2	Spo26210.1.CDS.2	CDS
Spo26210.1.CDS.1	Spo26210.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26210.1.utr3p.1	Spo26210.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26210.1.exon.4	Spo26210.1.exon.4	exon
Spo26210.1.exon.3	Spo26210.1.exon.3	exon
Spo26210.1.exon.2	Spo26210.1.exon.2	exon
Spo26210.1.exon.1	Spo26210.1.exon.1	exon

Homology

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BLAST of Spo26210.1 vs. NCBI nr
Match: gi|902194774|gb|KNA12656.1| (hypothetical protein SOVF_124070 [Spinacia oleracea])

HSP 1 Score: 439.1 bits (1128), Expect = 4.600e-120
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF
Sbjct: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL
Sbjct: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE
Sbjct: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 225
           EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS
Sbjct: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 224

[Close]

BLAST of Spo26210.1 vs. NCBI nr
Match: gi|731324498|ref|XP_010673001.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 389.4 bits (999), Expect = 4.200e-105
Identity = 189/224 (84.38%), Postives = 216/224 (96.43%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEVDGEINGE+VGRCLSSF+DDGTTESHRY+LARRTTLEMLKDRGY +P+SEI+ +LH+F
Sbjct: 1   MEVDGEINGESVGRCLSSFVDDGTTESHRYFLARRTTLEMLKDRGYAVPNSEIDLSLHDF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+I+GPKPD DRLRI++ L++D+SK+I+VIFCGPQLVKVNT+RGIGAQIVN+E L+GLIL
Sbjct: 61  RNIYGPKPDPDRLRISTALRSDESKKILVIFCGPQLVKVNTIRGIGAQIVNRESLSGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQSKIT+QAQ++VD FQFKVEIFQITDLLVNIT HVLKP+HQVLTPREKEKLLKKYNL+
Sbjct: 121 VLQSKITNQAQKSVDLFQFKVEIFQITDLLVNITKHVLKPRHQVLTPREKEKLLKKYNLQ 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 225
           EKQLPRMS+KDAIVRYYG EKGQVLKVTYSGEITQSHVTYRCVS
Sbjct: 181 EKQLPRMSVKDAIVRYYGLEKGQVLKVTYSGEITQSHVTYRCVS 224

[Close]

BLAST of Spo26210.1 vs. NCBI nr
Match: gi|590635085|ref|XP_007028544.1| (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 308.9 bits (790), Expect = 7.200e-81
Identity = 152/223 (68.16%), Postives = 185/223 (82.96%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           +E DG  NGEA+G+CLS  +DDG+TESHRYYL+RRT LEML+DRGY +P SEIN +L EF
Sbjct: 6   LEGDGS-NGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEF 65

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+I+G  PD DRLR+++  + D SKRI+V+F GP +VKV+ +R I   I NKE L GLIL
Sbjct: 66  RAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLIL 125

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQ+ IT+QA +A+D F FKVEIFQITDLLVNIT HVLKPKHQVLT +EK+KLL+KY++E
Sbjct: 126 VLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIE 185

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           EKQLPR+  KDAI RYYGYE+GQV+KV Y GEITQSHVTYRCV
Sbjct: 186 EKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCV 227

[Close]

BLAST of Spo26210.1 vs. NCBI nr
Match: gi|255576548|ref|XP_002529165.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Ricinus communis])

HSP 1 Score: 307.0 bits (785), Expect = 2.700e-80
Identity = 148/216 (68.52%), Postives = 183/216 (84.72%), Query Frame = 1

		  
Query: 8   NGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPK 67
           N E +G+C SS+ DDGT E+HRYYL+RRT LEML+DRGY +PSSEI+ +L EFR+I GP 
Sbjct: 22  NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81

Query: 68  PDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKIT 127
           PD+DRL+ ++   +D SKR++V+F GP ++KV+T+R I  QIVNK+ L GLIL+LQ++IT
Sbjct: 82  PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141

Query: 128 SQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRM 187
           +QA +AVD F+FKVE+FQITDLLVNIT HVLKPKHQVLT REK+KLLK Y +EEKQLPR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

Query: 188 SMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
             KDAI RYYG EKGQV+KVTYSGEIT+SHVTYRCV
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCV 237

[Close]

BLAST of Spo26210.1 vs. NCBI nr
Match: gi|645271194|ref|XP_008240797.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Prunus mume])

HSP 1 Score: 305.8 bits (782), Expect = 6.100e-80
Identity = 143/223 (64.13%), Postives = 186/223 (83.41%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           +E +G+ NGE +G CL+ ++DDG+ ESHRYYL+RRT LEM++DRGY +PSSEI+ +L EF
Sbjct: 5   VEANGDANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQEF 64

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R++ G  PD++RLR ++  + D S RIMVI+CGP +VKVN +RG+ +QI NK+ LNGLIL
Sbjct: 65  RALHGQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLIL 124

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           I Q++ITSQA + ++ + FK EIFQITDLLVNIT HVLKPKH VLT +EK+KLLKKYN+E
Sbjct: 125 ITQNQITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIE 184

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           E QLPR+S KDAI +YYG EKGQV+KVTY+G+IT+SHVTYRC+
Sbjct: 185 ENQLPRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCI 227

[Close]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1K0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124070 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 3.200e-120
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF
Sbjct: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL
Sbjct: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE
Sbjct: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 225
           EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS
Sbjct: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 224

[Close]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNR0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062710 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 2.900e-105
Identity = 189/224 (84.38%), Postives = 216/224 (96.43%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEVDGEINGE+VGRCLSSF+DDGTTESHRY+LARRTTLEMLKDRGY +P+SEI+ +LH+F
Sbjct: 1   MEVDGEINGESVGRCLSSFVDDGTTESHRYFLARRTTLEMLKDRGYAVPNSEIDLSLHDF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+I+GPKPD DRLRI++ L++D+SK+I+VIFCGPQLVKVNT+RGIGAQIVN+E L+GLIL
Sbjct: 61  RNIYGPKPDPDRLRISTALRSDESKKILVIFCGPQLVKVNTIRGIGAQIVNRESLSGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQSKIT+QAQ++VD FQFKVEIFQITDLLVNIT HVLKP+HQVLTPREKEKLLKKYNL+
Sbjct: 121 VLQSKITNQAQKSVDLFQFKVEIFQITDLLVNITKHVLKPRHQVLTPREKEKLLKKYNLQ 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCVS 225
           EKQLPRMS+KDAIVRYYG EKGQVLKVTYSGEITQSHVTYRCVS
Sbjct: 181 EKQLPRMSVKDAIVRYYGLEKGQVLKVTYSGEITQSHVTYRCVS 224

[Close]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Match: A0A061EW60_THECC (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cacao GN=TCM_024387 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.000e-81
Identity = 152/223 (68.16%), Postives = 185/223 (82.96%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           +E DG  NGEA+G+CLS  +DDG+TESHRYYL+RRT LEML+DRGY +P SEIN +L EF
Sbjct: 6   LEGDGS-NGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEF 65

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+I+G  PD DRLR+++  + D SKRI+V+F GP +VKV+ +R I   I NKE L GLIL
Sbjct: 66  RAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLIL 125

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQ+ IT+QA +A+D F FKVEIFQITDLLVNIT HVLKPKHQVLT +EK+KLL+KY++E
Sbjct: 126 VLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIE 185

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           EKQLPR+  KDAI RYYGYE+GQV+KV Y GEITQSHVTYRCV
Sbjct: 186 EKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCV 227

[Close]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Match: B9ST46_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0248850 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.900e-80
Identity = 148/216 (68.52%), Postives = 183/216 (84.72%), Query Frame = 1

		  
Query: 8   NGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPK 67
           N E +G+C SS+ DDGT E+HRYYL+RRT LEML+DRGY +PSSEI+ +L EFR+I GP 
Sbjct: 22  NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81

Query: 68  PDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKIT 127
           PD+DRL+ ++   +D SKR++V+F GP ++KV+T+R I  QIVNK+ L GLIL+LQ++IT
Sbjct: 82  PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141

Query: 128 SQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRM 187
           +QA +AVD F+FKVE+FQITDLLVNIT HVLKPKHQVLT REK+KLLK Y +EEKQLPR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

Query: 188 SMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
             KDAI RYYG EKGQV+KVTYSGEIT+SHVTYRCV
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCV 237

[Close]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Match: A0A067K1X8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 9.400e-80
Identity = 151/222 (68.02%), Postives = 191/222 (86.04%), Query Frame = 1

		  
Query: 2   EVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFR 61
           E +G  +  A+GRCLSS+ D+G+ ES RYYL+RRT LEMLKDRGY IPS +IN +L EFR
Sbjct: 16  ETNGSFDMGALGRCLSSYGDEGSAESCRYYLSRRTVLEMLKDRGYAIPSVDINISLQEFR 75

Query: 62  SIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILI 121
           +I G  PD+DRL+I+++ +++ +KR++VIFCGP +VKV++VR I AQIVNK+ L GLILI
Sbjct: 76  AIHGQDPDIDRLKISAIHKSNPNKRMLVIFCGPGVVKVSSVRVIAAQIVNKDILTGLILI 135

Query: 122 LQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEE 181
           LQ++IT+QA +A+D F+FKVE+FQITDLLVNIT HVLKPKH+VLT REK+KLLKKY++EE
Sbjct: 136 LQNQITNQALKAMDLFKFKVEMFQITDLLVNITKHVLKPKHEVLTEREKQKLLKKYSIEE 195

Query: 182 KQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           KQLPR+  KDAI RYYG EKGQV+KVTYSG+IT+SHVTYRCV
Sbjct: 196 KQLPRLLKKDAIARYYGLEKGQVVKVTYSGDITESHVTYRCV 237

[Close]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.300e-70
Identity = 126/223 (56.50%), Postives = 175/223 (78.48%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEV G+     +  CLS ++D  + ESHRYYLARR  L+ML+DRGY +   +IN +LH+F
Sbjct: 1   MEVKGKETASVL--CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+++G +PD+DRLRI+++ ++D +K++ ++F G  +VKVN +R + A I+++E + GLIL
Sbjct: 61  RTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQ+ +T+QA +A++ F FKVEIFQITDLLVNIT H LKP+HQVL   EK  LLKK+++E
Sbjct: 121 VLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIE 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           EKQLPR+S KDAIVRYYG EKGQV+KV Y GE+T+SHV +RCV
Sbjct: 181 EKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.200e-67
Identity = 122/205 (59.51%), Postives = 164/205 (80.00%), Query Frame = 1

		  
Query: 20  IDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLRIASVL 79
           I   + E H+YYLARRTT+EML+DRGY +   +IN +L +FR+++G  PD+D LRI++  
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 80  QADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQFQF 139
           + D SK+I V+FCG  +VKVN +R I A ++++E + GLIL+LQS IT+QA +AV+ F F
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 140 KVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIVRYYGY 199
           KVE+F+ITDLLVN++ HVL+PKHQVL  +EKE LLKK+++EEKQLPR+S KD IVRYYG 
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 200 EKGQVLKVTYSGEITQSHVTYRCVS 225
           E GQV+KVTY  E+++SHVTYRCVS
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCVS 218

[Close]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.800e-55
Identity = 108/209 (51.67%), Postives = 147/209 (70.33%), Query Frame = 1

		  
Query: 15  CLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLR 74
           C+S   D G  ES R+YLAR T  EML+DRGY +  +E++ TL EFRS+FG KP+L+RLR
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 75  IASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAV 134
           I   L++D  K+I+V+F G + + V +VR +  QI N  GL+ +IL+LQSK+   AQ+A+
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 135 DQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIV 194
             F F VE F I DLLVNIT H+ +PK ++L   EKE+LL+K+ LE+KQLP +  KD+ V
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 195 RYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           RYYG +K QV+K+TYS E     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.200e-27
Identity = 71/200 (35.50%), Postives = 113/200 (56.50%), Query Frame = 1

		  
Query: 26  ESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLRIASVLQADQSK 85
           E  R Y  ++T ++ML+DRGY I  SE+  T  +F    G     + L      + D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 86  RIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQF--QFKVEI 145
           ++ + F     V V T++ +    +  E +   IL++Q  +T  A+  + +   +F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMK-MYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 146 FQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIVRYYGYEKGQ 205
           FQ  ++LVNI  HVL P+HQVLT  EK+ LL++Y ++E QLPR+ + D I RY+G ++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 206 VLKVTYSGEITQSHVTYRCV 224
           V+K+    E    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.700e-27
Identity = 66/209 (31.58%), Postives = 119/209 (56.94%), Query Frame = 1

		  
Query: 22  DGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDR-----LRIA 81
           D   E++R +  R+T L+M+ DRGY++   E++Q L  F+  FG +P   +     L I 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTIL 62

Query: 82  SVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQ 141
                D + ++ V F     + + T++ I  Q + ++ ++  I+++Q+ +T  A++++  
Sbjct: 63  VAHNDDPADQMFVFFPEDTKIGIKTIKAI-CQQMQEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 142 F--QFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIV 201
              ++ +E F   +L+VNIT H L P+H V+T  EK +LL +Y L++ QLPR+   D + 
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 202 RYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           RY+G  +GQV+K+    E    ++TYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 266.2 bits (679), Expect = 1.900e-71
Identity = 126/223 (56.50%), Postives = 175/223 (78.48%), Query Frame = 1

		  
Query: 1   MEVDGEINGEAVGRCLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEF 60
           MEV G+     +  CLS ++D  + ESHRYYLARR  L+ML+DRGY +   +IN +LH+F
Sbjct: 1   MEVKGKETASVL--CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDF 60

Query: 61  RSIFGPKPDLDRLRIASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLIL 120
           R+++G +PD+DRLRI+++ ++D +K++ ++F G  +VKVN +R + A I+++E + GLIL
Sbjct: 61  RTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLIL 120

Query: 121 ILQSKITSQAQRAVDQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLE 180
           +LQ+ +T+QA +A++ F FKVEIFQITDLLVNIT H LKP+HQVL   EK  LLKK+++E
Sbjct: 121 VLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIE 180

Query: 181 EKQLPRMSMKDAIVRYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           EKQLPR+S KDAIVRYYG EKGQV+KV Y GE+T+SHV +RCV
Sbjct: 181 EKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 257.7 bits (657), Expect = 6.700e-69
Identity = 122/205 (59.51%), Postives = 164/205 (80.00%), Query Frame = 1

		  
Query: 20  IDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLRIASVL 79
           I   + E H+YYLARRTT+EML+DRGY +   +IN +L +FR+++G  PD+D LRI++  
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 80  QADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQFQF 139
           + D SK+I V+FCG  +VKVN +R I A ++++E + GLIL+LQS IT+QA +AV+ F F
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 140 KVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIVRYYGY 199
           KVE+F+ITDLLVN++ HVL+PKHQVL  +EKE LLKK+++EEKQLPR+S KD IVRYYG 
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 200 EKGQVLKVTYSGEITQSHVTYRCVS 225
           E GQV+KVTY  E+++SHVTYRCVS
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCVS 218

[Close]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 214.9 bits (546), Expect = 5.000e-56
Identity = 108/209 (51.67%), Postives = 147/209 (70.33%), Query Frame = 1

		  
Query: 15  CLSSFIDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLR 74
           C+S   D G  ES R+YLAR T  EML+DRGY +  +E++ TL EFRS+FG KP+L+RLR
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 75  IASVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAV 134
           I   L++D  K+I+V+F G + + V +VR +  QI N  GL+ +IL+LQSK+   AQ+A+
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 135 DQFQFKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIV 194
             F F VE F I DLLVNIT H+ +PK ++L   EKE+LL+K+ LE+KQLP +  KD+ V
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 195 RYYGYEKGQVLKVTYSGEITQSHVTYRCV 224
           RYYG +K QV+K+TYS E     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.800e-29
Identity = 71/200 (35.50%), Postives = 113/200 (56.50%), Query Frame = 1

		  
Query: 26  ESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGPKPDLDRLRIASVLQADQSK 85
           E  R Y  ++T ++ML+DRGY I  SE+  T  +F    G     + L      + D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 86  RIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQF--QFKVEI 145
           ++ + F     V V T++ +    +  E +   IL++Q  +T  A+  + +   +F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMK-MYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 146 FQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIVRYYGYEKGQ 205
           FQ  ++LVNI  HVL P+HQVLT  EK+ LL++Y ++E QLPR+ + D I RY+G ++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 206 VLKVTYSGEITQSHVTYRCV 224
           V+K+    E    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 101.3 bits (251), Expect = 8.000e-22
Identity = 65/207 (31.40%), Postives = 112/207 (54.11%), Query Frame = 1

		  
Query: 20  IDDGTTESHRYYLARRTTLEMLKDRGYIIPSSEINQTLHEFRSIFGP---KPDLDRLRIA 79
           + D   E  R +  RRT L+ML+DRGY I  S++N    EF   F     K + + L ++
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 80  SVLQADQSKRIMVIFCGPQLVKVNTVRGIGAQIVNKEGLNGLILILQSKITSQAQRAVDQ 139
           +    + + +I V +     V V  ++   A  +  + ++  I+++   IT+ A+ AV +
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 140 FQ--FKVEIFQITDLLVNITSHVLKPKHQVLTPREKEKLLKKYNLEEKQLPRMSMKDAIV 199
                 +E+F+  +L+ NIT H L  K+ VL  + K+KLL  Y +++ QLPR+ + D + 
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLA 180

Query: 200 RYYGYEKGQVLKVTYSGEITQSHVTYR 222
           RYYG ++GQV+K+  S   +  + TYR
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYR 207

The following BLAST results are available for this feature:

BLAST of Spo26210.1 vs. NCBI nr
BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
BLAST of Spo26210.1 vs. TAIR (Arabidopsis)

BLAST of Spo26210.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902194774\|gb\|KNA12656.1\|	4.6e-120	100.	hypothetical protein SOVF_1240...	[more]
gi\|731324498\|ref\|XP_010673001.1\|	4.2e-105	84.3	PREDICTED: DNA-directed RNA po...	[more]
gi\|590635085\|ref\|XP_007028544.1\|	7.2e-81	68.1	Eukaryotic rpb5 RNA polymerase...	[more]
gi\|255576548\|ref\|XP_002529165.1\|	2.7e-80	68.5	PREDICTED: DNA-directed RNA po...	[more]
gi\|645271194\|ref\|XP_008240797.1\|	6.1e-80	64.1	PREDICTED: DNA-directed RNA po...	[more]

BLAST of Spo26210.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R1K0_SPIOL	3.2e-120	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNR0_BETVU	2.9e-105	84.3	Uncharacterized protein OS=Bet...	[more]
A0A061EW60_THECC	5.0e-81	68.1	Eukaryotic rpb5 RNA polymerase...	[more]
B9ST46_RICCO	1.9e-80	68.5	DNA-directed RNA polymerase II...	[more]
A0A067K1X8_JATCU	9.4e-80	68.0	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo26210.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RPE5A_ARATH	3.3e-70	56.5	DNA-directed RNA polymerase V ...	[more]
RPD5B_ARATH	1.2e-67	59.5	DNA-directed RNA polymerases I...	[more]
RPE5C_ARATH	8.8e-55	51.6	DNA-directed RNA polymerase V ...	[more]
RPB5A_ARATH	1.2e-27	35.5	DNA-directed RNA polymerases I...	[more]
RPAB1_CAEBR	2.7e-27	31.5	DNA-directed RNA polymerases I...	[more]

BLAST of Spo26210.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

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Match Name	E-value	Identity	Description
AT3G57080.1	1.9e-71	56.5	Eukaryotic rpb5 RNA polymerase...	[more]
AT2G41340.1	6.7e-69	59.5	RNA polymerase II fifth larges...	[more]
AT3G54490.1	5.0e-56	51.6	RNA polymerase II fifth larges...	[more]
AT3G22320.1	6.8e-29	35.5	Eukaryotic rpb5 RNA polymerase...	[more]
AT5G57980.1	8.0e-22	31.4	RNA polymerase II fifth larges...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 158..223 score: 1.0
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	GENE3D	3.90.940.20		coord: 152..223 score: 2.4
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 151..223 score: 1.1
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	unknown	SSF55287	RPB5-like RNA polymerase subunit	coord: 149..223 score: 3.66
IPR005571	RNA polymerase, Rpb5, N-terminal	GENE3D	3.40.1340.10		coord: 21..151 score: 7.3
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 25..105 score: 7.5
IPR005571	RNA polymerase, Rpb5, N-terminal	unknown	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 25..152 score: 2.35
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIR	PIRSF000747	RPB5	coord: 19..224 score: 4.9
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 22..223 score: 8.6E
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED	coord: 22..223 score: 8.6E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity