Spo26321.1 (mRNA) | SpinachBase

Overview


Name	Spo26321.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 88983040 .. 88985967 (-)
Sequence length	2809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCTAGTTAGTTTTAGTGTAGATCCTTTTTTTGGATTGTTCTACTTCTATCACACACTATCAAATGGTCATTGCCTTTGATGAACCAAAAAAGCTCATGGCCACTCAATTTAAAATTCAATCAATTTATATTAGTATGAATAAAGACACAAGTGACTAGAAGAAACTTTAAATTGATATGGTCAAATATATGATTCTCTTAAAACAATATATTCAACATTTTATAGAATGTTAATTTAATATTGAAAGAGAACATAAGCCTAACAAAAGAATATGTACTACAATTAATCACATTTTTATGAAGTAAAAGATTAAAAAATGCAATAGTGGAAGCAAAAGAAAAATAGCCACCAAGAAATAACAAGTATAAAAACCATGTTAACTTGCTCTCTTATCCTCCGTAGAAAATAATTCCATTTCAGTTACTAAAAAAAACAAAAATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATGTATGATTTCTTTTACTCAACTTCAATTCATCATTTTTCTTTTAATTCTAAAGTTTGTAGGAAATATTAGATTTAATTTCTAAGCTAACTAATTAACGATTTGATATTTTTATGTGCAGAGATGCTAAATCAGCTAATATATGAATTGAAGCTGCTCAGGGTTGAAATCTCGCTGTTACAAATAAAATAATACAGTTATTTATGCTTTTTCTTTTTGGTAGTAATGTTTGCACTTACTTTAGCACTTCCGATCACTAGCTATTTTATTATGGGGAAATGATTTTGGCACATCAAAATTTAATTTCGGTATACTCATTCTGAGAGACTGAGAGCATACTTTTGTATGGTGTTCTCAGCTCACATGATCGAAGGTGTGCCAAAATTAATAAATGGCGTGCCAAAATCAATTAATTTCCGCTACTATCTACGAGATGTGAATAAGTTTGGATGGTGCTTGTGAATTACACTCATGACAAATTTTTTAAGTCCGCTAGCTATCATTGTCCTTGTATGCCAAGGGTATTTTGATGTAAGTTCTTCGTTGTGTTATTTTGTTGAAGTTATTGTTGCTATGTACGTAATAGTTTTTATATTCGACCCCTCATAATTTAGAACAAACAATATTTATTTGCCCATATGCTTGAATCGTGTGTGCATATATACTTAAAATACCTTTGATTGTACTATCGAGTAACTAGAAAGATACAATCGGATGTACGATGAAGATTCTCACATAGTGATAGCATATGCGAAGTTTATAGCTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTAGTTTTGGCCAACAAATCAAATCTTGTACGTTGGTAGTTTGGGTTAACTCGGATTTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTTGTTTTGGCCAACCAACCAAGTCTTATGTTATAGTGTGGGTTAACCCGGATTATAATTTTCATGAGACGCTTAGAGCTCTATTATGTTTAGAAAACTAGAACTAAGTGTCCTAAATATGTCATATCTCTATCATAACTCTAACACATTAACACCACCGTTTTTGCTTTAGGTCTTCTGTGAAACTATTTATTTTGGTTTACGCTAATTATTGAGATAAAAACAAGGAAATTAATTATTGGGCTAACAGATATTTTTTAAAAATAAATAAATTGACAACTGGGACCATTGAAGAGATAACAATAAATAATAAATAATCATTAGAGACAACTTAAATCTATGACAACCAAAGTAAAACGATAATAAGAAAGCAAATATGGGATTAAAACAAGCTGGAAAGTAAAGTAATTATTGTCCTATTAATGAATAGAGAATTAAAACTGCATGTGGTGGATGAGATCAACAGAGTTAGTAGCAAGTTCAACAAGAGGCTCCATAATATCCTCAACCCTTATCAAAAGAACATCTCTAGCCTTAGCAAGATGCATATTATTAACGCATCTGTTAGCAACATCTTGAACATTCTTAACATTGTTCTCCAAGCTTACCCTCTTGGACTGCTTATCACTCTTGGTTCCACCACCCAAGTGTTGGCTTTCTTCCATTGCACGGTTCAACGTAAGGATGGAGTCAGCTATCATGGTCCCACATTCGTTCAAGGCGGCAACTTCACGAGTCCAAAGTTTAGGCTTTTTAGCTTGGTTTTCGAGTTTACTTGAAACGGTTTGAACCTCGGCTATGGTTGCCATGATGGCAAGACGGGTGGACTTTTTAGGGTGACTGTTGATGCGTGCAGCTTGATGAAGGAGTGTATCTAAGCATACATCAATGTATGTGGCGTCTTCGCAAGTTTTTCTGACGAAAGATTCAGCAACTGAGTCGCTTGCATAGGCGCAATTACAAGCTGAGAAAAGGAGAACGACACCTAAAACAGAGACCAGGGTGGTGAATTCACGAGCCATTGCTATTGCTATTGCTATTGCTATTGCTATTTCTATTGCTATTTCTATTGCTATTGCTATTGCTGGTGTGTTTGAGCTTTGATGGATGGCTGAGAATACAGAGACCTGACATTAACCATATATATAGTTTTTTTTAGATAGATGGTTGATTTAATTCATACGGTATTCGTGTATGCCT

mRNA sequence

ATTGCTAGTTAGTTTTAGTGTAGATCCTTTTTTTGGATTGTTCTACTTCTATCACACACTATCAAATGGTCATTGCCTTTGATGAACCAAAAAAGCTCATGGCCACTCAATTTAAAATTCAATCAATTTATATTAGTATGAATAAAGACACAAGTGACTAGAAGAAACTTTAAATTGATATGGTCAAATATATGATTCTCTTAAAACAATATATTCAACATTTTATAGAATGTTAATTTAATATTGAAAGAGAACATAAGCCTAACAAAAGAATATGTACTACAATTAATCACATTTTTATGAAGTAAAAGATTAAAAAATGCAATAGTGGAAGCAAAAGAAAAATAGCCACCAAGAAATAACAAGTATAAAAACCATGTTAACTTGCTCTCTTATCCTCCGTAGAAAATAATTCCATTTCAGTTACTAAAAAAAACAAAAATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATAGATGCTAAATCAGCTAATATATGAATTGAAGCTGCTCAGGGTTGAAATCTCGCTGTTACAAATAAAATAATACAGTTATTTATGCTTTTTCTTTTTGGTAGTAATGTTTGCACTTACTTTAGCACTTCCGATCACTAGCTATTTTATTATGGGGAAATGATTTTGGCACATCAAAATTTAATTTCGGTATACTCATTCTGAGAGACTGAGAGCATACTTTTGTATGGTGTTCTCAGCTCACATGATCGAAGGTGTGCCAAAATTAATAAATGGCGTGCCAAAATCAATTAATTTCCGCTACTATCTACGAGATGTGAATAAGTTTGGATGGTGCTTGTGAATTACACTCATGACAAATTTTTTAAGTCCGCTAGCTATCATTGTCCTTGTATGCCAAGGGTATTTTGATGTAAGTTCTTCGTTGTGTTATTTTGTTGAAGTTATTGTTGCTATGTACGTAATAGTTTTTATATTCGACCCCTCATAATTTAGAACAAACAATATTTATTTGCCCATATGCTTGAATCGTGTGTGCATATATACTTAAAATACCTTTGATTGTACTATCGAGTAACTAGAAAGATACAATCGGATGTACGATGAAGATTCTCACATAGTGATAGCATATGCGAAGTTTATAGCTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTAGTTTTGGCCAACAAATCAAATCTTGTACGTTGGTAGTTTGGGTTAACTCGGATTTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTTGTTTTGGCCAACCAACCAAGTCTTATGTTATAGTGTGGGTTAACCCGGATTATAATTTTCATGAGACGCTTAGAGCTCTATTATGTTTAGAAAACTAGAACTAAGTGTCCTAAATATGTCATATCTCTATCATAACTCTAACACATTAACACCACCGTTTTTGCTTTAGGTCTTCTGTGAAACTATTTATTTTGGTTTACGCTAATTATTGAGATAAAAACAAGGAAATTAATTATTGGGCTAACAGATATTTTTTAAAAATAAATAAATTGACAACTGGGACCATTGAAGAGATAACAATAAATAATAAATAATCATTAGAGACAACTTAAATCTATGACAACCAAAGTAAAACGATAATAAGAAAGCAAATATGGGATTAAAACAAGCTGGAAAGTAAAGTAATTATTGTCCTATTAATGAATAGAGAATTAAAACTGCATGTGGTGGATGAGATCAACAGAGTTAGTAGCAAGTTCAACAAGAGGCTCCATAATATCCTCAACCCTTATCAAAAGAACATCTCTAGCCTTAGCAAGATGCATATTATTAACGCATCTGTTAGCAACATCTTGAACATTCTTAACATTGTTCTCCAAGCTTACCCTCTTGGACTGCTTATCACTCTTGGTTCCACCACCCAAGTGTTGGCTTTCTTCCATTGCACGGTTCAACGTAAGGATGGAGTCAGCTATCATGGTCCCACATTCGTTCAAGGCGGCAACTTCACGAGTCCAAAGTTTAGGCTTTTTAGCTTGGTTTTCGAGTTTACTTGAAACGGTTTGAACCTCGGCTATGGTTGCCATGATGGCAAGACGGGTGGACTTTTTAGGGTGACTGTTGATGCGTGCAGCTTGATGAAGGAGTGTATCTAAGCATACATCAATGTATGTGGCGTCTTCGCAAGTTTTTCTGACGAAAGATTCAGCAACTGAGTCGCTTGCATAGGCGCAATTACAAGCTGAGAAAAGGAGAACGACACCTAAAACAGAGACCAGGGTGGTGAATTCACGAGCCATTGCTATTGCTATTGCTATTGCTATTGCTATTTCTATTGCTATTTCTATTGCTATTGCTATTGCTGGTGTGTTTGAGCTTTGATGGATGGCTGAGAATACAGAGACCTGACATTAACCATATATATAGTTTTTTTTAGATAGATGGTTGATTTAATTCATACGGTATTCGTGTATGCCT

Coding sequence (CDS)

ATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATAGATGCTAA

Protein sequence

MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEHKNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDHKEGVKHLDRC

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo26321	Spo26321	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo26321.1	Spo26321.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26321.1.utr5p.1	Spo26321.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26321.1.CDS.2	Spo26321.1.CDS.2	CDS
Spo26321.1.CDS.1	Spo26321.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26321.1.utr3p.1	Spo26321.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26321.1.exon.2	Spo26321.1.exon.2	exon
Spo26321.1.exon.1	Spo26321.1.exon.1	exon

Homology

[Close]

BLAST of Spo26321.1 vs. NCBI nr
Match: gi|902037564|gb|KNA02655.1| (hypothetical protein SOVF_216650 [Spinacia oleracea])

HSP 1 Score: 276.6 bits (706), Expect = 2.400e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1

		  
Query: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60
           MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH
Sbjct: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60

Query: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120
           KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK
Sbjct: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120

Query: 121 THDHKEGVKHLD 133
           THDHKEGVKHLD
Sbjct: 121 THDHKEGVKHLD 132

[Close]

BLAST of Spo26321.1 vs. NCBI nr
Match: gi|731366283|ref|XP_010694985.1| (PREDICTED: uncharacterized histidine-rich protein DDB_G0274557-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 6.300e-16
Identity = 71/178 (39.89%), Postives = 86/178 (48.31%), Query Frame = 1

		  
Query: 4   MQMCKPGQVN-----CDETK--------HSKKHHFHFWQKQLQGNEQ------------- 63
           MQ+CKP   +      D+TK        + KKHH HFW +Q     Q             
Sbjct: 1   MQICKPVHYDKACRHIDQTKQHQKIGQNNDKKHHVHFWHEQKNEQPQANKHQPHVVAHPK 60

Query: 64  --------------QAIKKQQADIGQPNK-QYGTNNEHKNGGNKQHHEAVIIQPRGQKLR 123
                         QA  K + D  Q    +   +N H    NK  H+A     R  KLR
Sbjct: 61  HGQYEHKNGHNGHVQATNKHRHDAPQAQSHKLPGHNGHGQATNKHRHDAP--HARSHKLR 120

Query: 124 QCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDH------KEGVKHLDRC 135
           QCFGHG  +A SD+DE +ETIVIER+I+ER+VISH KK H H      KEGVKHLDRC
Sbjct: 121 QCFGHGDRVA-SDVDE-SETIVIERKIEERVVISHVKKCHGHKEGAKYKEGVKHLDRC 174

[Close]

BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6L3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216650 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.600e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1

		  
Query: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60
           MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH
Sbjct: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60

Query: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120
           KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK
Sbjct: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120

Query: 121 THDHKEGVKHLD 133
           THDHKEGVKHLD
Sbjct: 121 THDHKEGVKHLD 132

[Close]

BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BD46_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096750 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.400e-16
Identity = 71/178 (39.89%), Postives = 86/178 (48.31%), Query Frame = 1

		  
Query: 4   MQMCKPGQVN-----CDETK--------HSKKHHFHFWQKQLQGNEQ------------- 63
           MQ+CKP   +      D+TK        + KKHH HFW +Q     Q             
Sbjct: 1   MQICKPVHYDKACRHIDQTKQHQKIGQNNDKKHHVHFWHEQKNEQPQANKHQPHVVAHPK 60

Query: 64  --------------QAIKKQQADIGQPNK-QYGTNNEHKNGGNKQHHEAVIIQPRGQKLR 123
                         QA  K + D  Q    +   +N H    NK  H+A     R  KLR
Sbjct: 61  HGQYEHKNGHNGHVQATNKHRHDAPQAQSHKLPGHNGHGQATNKHRHDAP--HARSHKLR 120

Query: 124 QCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDH------KEGVKHLDRC 135
           QCFGHG  +A SD+DE +ETIVIER+I+ER+VISH KK H H      KEGVKHLDRC
Sbjct: 121 QCFGHGDRVA-SDVDE-SETIVIERKIEERVVISHVKKCHGHKEGAKYKEGVKHLDRC 174

The following BLAST results are available for this feature:

BLAST of Spo26321.1 vs. NCBI nr
BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
BLAST of Spo26321.1 vs. ExPASy Swiss-Prot
BLAST of Spo26321.1 vs. TAIR (Arabidopsis)

BLAST of Spo26321.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902037564\|gb\|KNA02655.1\|	2.4e-71	100.	hypothetical protein SOVF_2166...	[more]
gi\|731366283\|ref\|XP_010694985.1\|	6.3e-16	39.8	PREDICTED: uncharacterized his...	[more]

BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9Q6L3_SPIOL	1.6e-71	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BD46_BETVU	4.4e-16	39.8	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo26321.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo26321.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description