Spo26321.1 (mRNA)

Overview
NameSpo26321.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 88983040 .. 88985967 (-)
Sequence length2809
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCTAGTTAGTTTTAGTGTAGATCCTTTTTTTGGATTGTTCTACTTCTATCACACACTATCAAATGGTCATTGCCTTTGATGAACCAAAAAAGCTCATGGCCACTCAATTTAAAATTCAATCAATTTATATTAGTATGAATAAAGACACAAGTGACTAGAAGAAACTTTAAATTGATATGGTCAAATATATGATTCTCTTAAAACAATATATTCAACATTTTATAGAATGTTAATTTAATATTGAAAGAGAACATAAGCCTAACAAAAGAATATGTACTACAATTAATCACATTTTTATGAAGTAAAAGATTAAAAAATGCAATAGTGGAAGCAAAAGAAAAATAGCCACCAAGAAATAACAAGTATAAAAACCATGTTAACTTGCTCTCTTATCCTCCGTAGAAAATAATTCCATTTCAGTTACTAAAAAAAACAAAAATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATGTATGATTTCTTTTACTCAACTTCAATTCATCATTTTTCTTTTAATTCTAAAGTTTGTAGGAAATATTAGATTTAATTTCTAAGCTAACTAATTAACGATTTGATATTTTTATGTGCAGAGATGCTAAATCAGCTAATATATGAATTGAAGCTGCTCAGGGTTGAAATCTCGCTGTTACAAATAAAATAATACAGTTATTTATGCTTTTTCTTTTTGGTAGTAATGTTTGCACTTACTTTAGCACTTCCGATCACTAGCTATTTTATTATGGGGAAATGATTTTGGCACATCAAAATTTAATTTCGGTATACTCATTCTGAGAGACTGAGAGCATACTTTTGTATGGTGTTCTCAGCTCACATGATCGAAGGTGTGCCAAAATTAATAAATGGCGTGCCAAAATCAATTAATTTCCGCTACTATCTACGAGATGTGAATAAGTTTGGATGGTGCTTGTGAATTACACTCATGACAAATTTTTTAAGTCCGCTAGCTATCATTGTCCTTGTATGCCAAGGGTATTTTGATGTAAGTTCTTCGTTGTGTTATTTTGTTGAAGTTATTGTTGCTATGTACGTAATAGTTTTTATATTCGACCCCTCATAATTTAGAACAAACAATATTTATTTGCCCATATGCTTGAATCGTGTGTGCATATATACTTAAAATACCTTTGATTGTACTATCGAGTAACTAGAAAGATACAATCGGATGTACGATGAAGATTCTCACATAGTGATAGCATATGCGAAGTTTATAGCTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTAGTTTTGGCCAACAAATCAAATCTTGTACGTTGGTAGTTTGGGTTAACTCGGATTTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTTGTTTTGGCCAACCAACCAAGTCTTATGTTATAGTGTGGGTTAACCCGGATTATAATTTTCATGAGACGCTTAGAGCTCTATTATGTTTAGAAAACTAGAACTAAGTGTCCTAAATATGTCATATCTCTATCATAACTCTAACACATTAACACCACCGTTTTTGCTTTAGGTCTTCTGTGAAACTATTTATTTTGGTTTACGCTAATTATTGAGATAAAAACAAGGAAATTAATTATTGGGCTAACAGATATTTTTTAAAAATAAATAAATTGACAACTGGGACCATTGAAGAGATAACAATAAATAATAAATAATCATTAGAGACAACTTAAATCTATGACAACCAAAGTAAAACGATAATAAGAAAGCAAATATGGGATTAAAACAAGCTGGAAAGTAAAGTAATTATTGTCCTATTAATGAATAGAGAATTAAAACTGCATGTGGTGGATGAGATCAACAGAGTTAGTAGCAAGTTCAACAAGAGGCTCCATAATATCCTCAACCCTTATCAAAAGAACATCTCTAGCCTTAGCAAGATGCATATTATTAACGCATCTGTTAGCAACATCTTGAACATTCTTAACATTGTTCTCCAAGCTTACCCTCTTGGACTGCTTATCACTCTTGGTTCCACCACCCAAGTGTTGGCTTTCTTCCATTGCACGGTTCAACGTAAGGATGGAGTCAGCTATCATGGTCCCACATTCGTTCAAGGCGGCAACTTCACGAGTCCAAAGTTTAGGCTTTTTAGCTTGGTTTTCGAGTTTACTTGAAACGGTTTGAACCTCGGCTATGGTTGCCATGATGGCAAGACGGGTGGACTTTTTAGGGTGACTGTTGATGCGTGCAGCTTGATGAAGGAGTGTATCTAAGCATACATCAATGTATGTGGCGTCTTCGCAAGTTTTTCTGACGAAAGATTCAGCAACTGAGTCGCTTGCATAGGCGCAATTACAAGCTGAGAAAAGGAGAACGACACCTAAAACAGAGACCAGGGTGGTGAATTCACGAGCCATTGCTATTGCTATTGCTATTGCTATTGCTATTTCTATTGCTATTTCTATTGCTATTGCTATTGCTGGTGTGTTTGAGCTTTGATGGATGGCTGAGAATACAGAGACCTGACATTAACCATATATATAGTTTTTTTTAGATAGATGGTTGATTTAATTCATACGGTATTCGTGTATGCCT

mRNA sequence

ATTGCTAGTTAGTTTTAGTGTAGATCCTTTTTTTGGATTGTTCTACTTCTATCACACACTATCAAATGGTCATTGCCTTTGATGAACCAAAAAAGCTCATGGCCACTCAATTTAAAATTCAATCAATTTATATTAGTATGAATAAAGACACAAGTGACTAGAAGAAACTTTAAATTGATATGGTCAAATATATGATTCTCTTAAAACAATATATTCAACATTTTATAGAATGTTAATTTAATATTGAAAGAGAACATAAGCCTAACAAAAGAATATGTACTACAATTAATCACATTTTTATGAAGTAAAAGATTAAAAAATGCAATAGTGGAAGCAAAAGAAAAATAGCCACCAAGAAATAACAAGTATAAAAACCATGTTAACTTGCTCTCTTATCCTCCGTAGAAAATAATTCCATTTCAGTTACTAAAAAAAACAAAAATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATAGATGCTAAATCAGCTAATATATGAATTGAAGCTGCTCAGGGTTGAAATCTCGCTGTTACAAATAAAATAATACAGTTATTTATGCTTTTTCTTTTTGGTAGTAATGTTTGCACTTACTTTAGCACTTCCGATCACTAGCTATTTTATTATGGGGAAATGATTTTGGCACATCAAAATTTAATTTCGGTATACTCATTCTGAGAGACTGAGAGCATACTTTTGTATGGTGTTCTCAGCTCACATGATCGAAGGTGTGCCAAAATTAATAAATGGCGTGCCAAAATCAATTAATTTCCGCTACTATCTACGAGATGTGAATAAGTTTGGATGGTGCTTGTGAATTACACTCATGACAAATTTTTTAAGTCCGCTAGCTATCATTGTCCTTGTATGCCAAGGGTATTTTGATGTAAGTTCTTCGTTGTGTTATTTTGTTGAAGTTATTGTTGCTATGTACGTAATAGTTTTTATATTCGACCCCTCATAATTTAGAACAAACAATATTTATTTGCCCATATGCTTGAATCGTGTGTGCATATATACTTAAAATACCTTTGATTGTACTATCGAGTAACTAGAAAGATACAATCGGATGTACGATGAAGATTCTCACATAGTGATAGCATATGCGAAGTTTATAGCTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTAGTTTTGGCCAACAAATCAAATCTTGTACGTTGGTAGTTTGGGTTAACTCGGATTTCAGTCATTTTTATTCTTTGCTCTCACTTAATTATTTTTGTTTTGGCCAACCAACCAAGTCTTATGTTATAGTGTGGGTTAACCCGGATTATAATTTTCATGAGACGCTTAGAGCTCTATTATGTTTAGAAAACTAGAACTAAGTGTCCTAAATATGTCATATCTCTATCATAACTCTAACACATTAACACCACCGTTTTTGCTTTAGGTCTTCTGTGAAACTATTTATTTTGGTTTACGCTAATTATTGAGATAAAAACAAGGAAATTAATTATTGGGCTAACAGATATTTTTTAAAAATAAATAAATTGACAACTGGGACCATTGAAGAGATAACAATAAATAATAAATAATCATTAGAGACAACTTAAATCTATGACAACCAAAGTAAAACGATAATAAGAAAGCAAATATGGGATTAAAACAAGCTGGAAAGTAAAGTAATTATTGTCCTATTAATGAATAGAGAATTAAAACTGCATGTGGTGGATGAGATCAACAGAGTTAGTAGCAAGTTCAACAAGAGGCTCCATAATATCCTCAACCCTTATCAAAAGAACATCTCTAGCCTTAGCAAGATGCATATTATTAACGCATCTGTTAGCAACATCTTGAACATTCTTAACATTGTTCTCCAAGCTTACCCTCTTGGACTGCTTATCACTCTTGGTTCCACCACCCAAGTGTTGGCTTTCTTCCATTGCACGGTTCAACGTAAGGATGGAGTCAGCTATCATGGTCCCACATTCGTTCAAGGCGGCAACTTCACGAGTCCAAAGTTTAGGCTTTTTAGCTTGGTTTTCGAGTTTACTTGAAACGGTTTGAACCTCGGCTATGGTTGCCATGATGGCAAGACGGGTGGACTTTTTAGGGTGACTGTTGATGCGTGCAGCTTGATGAAGGAGTGTATCTAAGCATACATCAATGTATGTGGCGTCTTCGCAAGTTTTTCTGACGAAAGATTCAGCAACTGAGTCGCTTGCATAGGCGCAATTACAAGCTGAGAAAAGGAGAACGACACCTAAAACAGAGACCAGGGTGGTGAATTCACGAGCCATTGCTATTGCTATTGCTATTGCTATTGCTATTTCTATTGCTATTTCTATTGCTATTGCTATTGCTGGTGTGTTTGAGCTTTGATGGATGGCTGAGAATACAGAGACCTGACATTAACCATATATATAGTTTTTTTTAGATAGATGGTTGATTTAATTCATACGGTATTCGTGTATGCCT

Coding sequence (CDS)

ATGGGTACAATGCAAATGTGCAAGCCTGGTCAAGTTAATTGTGATGAAACTAAACACTCAAAAAAGCACCATTTCCACTTCTGGCAGAAGCAATTGCAAGGAAATGAGCAGCAAGCAATTAAGAAGCAACAAGCCGATATAGGACAACCTAATAAGCAATATGGGACTAATAATGAACACAAAAATGGTGGCAACAAGCAGCATCACGAGGCGGTTATTATTCAACCTCGTGGTCAGAAACTAAGACAGTGCTTTGGCCATGGAGGCGGCCTTGCTGGTTCAGATATCGATGAGGAAACAGAGACTATTGTTATAGAGAGGAGGATCAAAGAGAGGATTGTTATAAGCCATGCTAAGAAGACTCATGATCATAAGGAAGGAGTCAAGCATTTGGATAGATGCTAA

Protein sequence

MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEHKNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDHKEGVKHLDRC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26321Spo26321gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26321.1Spo26321.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26321.1.utr5p.1Spo26321.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26321.1.CDS.2Spo26321.1.CDS.2CDS
Spo26321.1.CDS.1Spo26321.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26321.1.utr3p.1Spo26321.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26321.1.exon.2Spo26321.1.exon.2exon
Spo26321.1.exon.1Spo26321.1.exon.1exon


Homology
[Close]
BLAST of Spo26321.1 vs. NCBI nr
Match: gi|902037564|gb|KNA02655.1| (hypothetical protein SOVF_216650 [Spinacia oleracea])

HSP 1 Score: 276.6 bits (706), Expect = 2.400e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

		  

Query: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60
           MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH
Sbjct: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60

Query: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120
           KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK
Sbjct: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120

Query: 121 THDHKEGVKHLD 133
           THDHKEGVKHLD
Sbjct: 121 THDHKEGVKHLD 132
[Close]
BLAST of Spo26321.1 vs. NCBI nr
Match: gi|731366283|ref|XP_010694985.1| (PREDICTED: uncharacterized histidine-rich protein DDB_G0274557-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 6.300e-16
Identity = 71/178 (39.89%), Postives = 86/178 (48.31%), Query Frame = 1 

		  

Query: 4   MQMCKPGQVN-----CDETK--------HSKKHHFHFWQKQLQGNEQ------------- 63
           MQ+CKP   +      D+TK        + KKHH HFW +Q     Q             
Sbjct: 1   MQICKPVHYDKACRHIDQTKQHQKIGQNNDKKHHVHFWHEQKNEQPQANKHQPHVVAHPK 60

Query: 64  --------------QAIKKQQADIGQPNK-QYGTNNEHKNGGNKQHHEAVIIQPRGQKLR 123
                         QA  K + D  Q    +   +N H    NK  H+A     R  KLR
Sbjct: 61  HGQYEHKNGHNGHVQATNKHRHDAPQAQSHKLPGHNGHGQATNKHRHDAP--HARSHKLR 120

Query: 124 QCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDH------KEGVKHLDRC 135
           QCFGHG  +A SD+DE +ETIVIER+I+ER+VISH KK H H      KEGVKHLDRC
Sbjct: 121 QCFGHGDRVA-SDVDE-SETIVIERKIEERVVISHVKKCHGHKEGAKYKEGVKHLDRC 174
[Close]
BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6L3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216650 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.600e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

		  

Query: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60
           MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH
Sbjct: 1   MGTMQMCKPGQVNCDETKHSKKHHFHFWQKQLQGNEQQAIKKQQADIGQPNKQYGTNNEH 60

Query: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120
           KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK
Sbjct: 61  KNGGNKQHHEAVIIQPRGQKLRQCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKK 120

Query: 121 THDHKEGVKHLD 133
           THDHKEGVKHLD
Sbjct: 121 THDHKEGVKHLD 132
[Close]
BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BD46_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096750 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.400e-16
Identity = 71/178 (39.89%), Postives = 86/178 (48.31%), Query Frame = 1 

		  

Query: 4   MQMCKPGQVN-----CDETK--------HSKKHHFHFWQKQLQGNEQ------------- 63
           MQ+CKP   +      D+TK        + KKHH HFW +Q     Q             
Sbjct: 1   MQICKPVHYDKACRHIDQTKQHQKIGQNNDKKHHVHFWHEQKNEQPQANKHQPHVVAHPK 60

Query: 64  --------------QAIKKQQADIGQPNK-QYGTNNEHKNGGNKQHHEAVIIQPRGQKLR 123
                         QA  K + D  Q    +   +N H    NK  H+A     R  KLR
Sbjct: 61  HGQYEHKNGHNGHVQATNKHRHDAPQAQSHKLPGHNGHGQATNKHRHDAP--HARSHKLR 120

Query: 124 QCFGHGGGLAGSDIDEETETIVIERRIKERIVISHAKKTHDH------KEGVKHLDRC 135
           QCFGHG  +A SD+DE +ETIVIER+I+ER+VISH KK H H      KEGVKHLDRC
Sbjct: 121 QCFGHGDRVA-SDVDE-SETIVIERKIEERVVISHVKKCHGHKEGAKYKEGVKHLDRC 174
The following BLAST results are available for this feature:
BLAST of Spo26321.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902037564|gb|KNA02655.1|2.4e-71100.hypothetical protein SOVF_2166... [more]
gi|731366283|ref|XP_010694985.1|6.3e-1639.8PREDICTED: uncharacterized his... [more]
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BLAST of Spo26321.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9Q6L3_SPIOL1.6e-71100.Uncharacterized protein OS=Spi... [more]
A0A0J8BD46_BETVU4.4e-1639.8Uncharacterized protein OS=Bet... [more]
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BLAST of Spo26321.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26321.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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