Spo26425.1 (mRNA)

Overview
NameSpo26425.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01155 : 167391 .. 169180 (-)
Sequence length548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGACTTGGTCAATAAAGTTAGCTGCCTCCTTAGCAGGGTCATTCATGGAGTCAGATGCCACGTATCCACGCTTGATTTCCTTGACAGGAGCATTCTTTACATTGAAACCAACATTGTCACCAGGGAGAGCCTCTAGAAGGGACTCATGGTGCATCTCAACTGATTTTACTTCAGTAGTCAGGAGGAGAGCATTCCAGAGTTTTGACAGAAAGAAGATAGACAACAGCGCCAGGTAATTGTCTAATACTTCAGTCATTGTGTTTGTTAATTTGGATTTCATTTGTTTAAGTTTTTGGAGGTATTGTTGAACCTTTGTTGATTCAAATGGATTGTTACAAAATAATGACTCAAAAATTGTCCAATATGCTTAAAGATGAACAACTCACGTTGATTCTGCAGCTAAACTTTAGCTTTGTCTTTGCCATTATAAAATTTAGTACTACTATTATAAAACACACAGTATTTTTAAAGCTGGTATTATTTGATAAATGATAACGTACCATTTTTGTACAATTCTTTGTGTAACTTTCCTCTATGTTATTGCCATTTGGCATTTATTATCTCACCAGATTTTGTGGGCAGTAGTAACCTACCAAACTCATTCAAAATTTGCACCTAATTCTTCTAAGTTGTATCGAAACTCTTTGGGTGTTTGCTTATGAAAACTTTGAAGTAAGAAAAGCTTTTCAGGTGGAGAGGTTTAATCATTTGAAAAAGTTTAAGGGAGTGTTTGGTTTGATGAGAGTTTTCAGATAAAAATTTATTGTATGAGCTTTTTGCATTAGAGGCTTGAAAAAATGATAAGTTCAAGACATCGGTACTGTGAGTCCTGAAGTTGAAACTTGCTCACTTTCTTTTTTGATAGGTGATATTTAAATAAGTTATGTGGTACTTTAAAATTCTGAGCTCTTTGTGATGCAATTATCAACTATTCTTGATGTGGATTTATGAGAGTGCCTGATACCTGTATATTCAATAAAAATCTGCCAAAGTCATTGCTCGACTTCTCTCAAAACTAAGTCTATGTTATGTCGTTAAAGCTCCTCTGGTGTGTGTCTCCCTTCCTTTTTGCAGGCTTCTCGATCCTTCTCCTCTGCTCTCAACTTCGTAAGTTCTTGATTTATAGTTTGTTCGGGTTGACCCGTTTTCCGATTGCAAATACTTTTAGATTTTTAGTTTTTGATGAGAAAAAGAAGGTGTTTGTCGGATAAAATGGAGAAAGATTAAAGATTTCCTCCACCATGAACATCAAGTCAAAATGATTTCCTCCACCATGAACATGAAGTGGGCGCATCTGAATTATGAACATTGACAACGTCCATGTTCAACGTGCGTTTGGACATGATACTAGATTAATATATTCATTTGTTCATAAATATATTCATCATTCAACATAATATTAGATTAATATATTTATTTGTTCATAAATGTATATGTTCCTACATATTATTGGTAATATAACTGAATTGGAAGTTAATTTGTTTTCCCTGTATTTGTTTTTTTACAGATTTCTATATGGAACAGAGTACAATTGCTAGACAAGCAGTTTTTTTTTTGAGTTATAGTTTGCTACAGAAATCGAATTGTTTATTGTTCAATATTTGTTCTTAAACGTTTGAACAATACATGGAGTTTTTTTATTCTCGCTGAAATTTCATACAATCAGTTTATTTTGATTTGGTATTTTGGGTTAATTCCTAGAATTGTGGGAAGTCAATTACAATGGGAACGCTCTTTTCATATTTTTTTTTAGAAAATAAAGAAGGAATACACGGTTGTCTAA

mRNA sequence

ATGATGATGACTTGGTCAATAAAGTTAGCTGCCTCCTTAGCAGGGTCATTCATGGAGTCAGATGCCACGTATCCACGCTTGATTTCCTTGACAGGAGCATTCTTTACATTGAAACCAACATTGTCACCAGGGAGAGCCTCTAGAAGGGACTCATGGTGCATCTCAACTGATTTTACTTCAGTAGTCAGGAGGAGAGCATTCCAGAGTTTTGACAGAAAGAAGATAGACAACAGCGCCAGGCTTCTCGATCCTTCTCCTCTGCTCTCAACTTCATTTCTATATGGAACAGAGTACAATTGCTAGACAAGCAGTTTTTTTTTTGAGTTATAGTTTGCTACAGAAATCGAATTGTTTATTGTTCAATATTTGTTCTTAAACGTTTGAACAATACATGGAGTTTTTTTATTCTCGCTGAAATTTCATACAATCAGTTTATTTTGATTTGGTATTTTGGGTTAATTCCTAGAATTGTGGGAAGTCAATTACAATGGGAACGCTCTTTTCATATTTTTTTTTAGAAAATAAAGAAGGAATACACGGTTGTCTAA

Coding sequence (CDS)

ATGATGATGACTTGGTCAATAAAGTTAGCTGCCTCCTTAGCAGGGTCATTCATGGAGTCAGATGCCACGTATCCACGCTTGATTTCCTTGACAGGAGCATTCTTTACATTGAAACCAACATTGTCACCAGGGAGAGCCTCTAGAAGGGACTCATGGTGCATCTCAACTGATTTTACTTCAGTAGTCAGGAGGAGAGCATTCCAGAGTTTTGACAGAAAGAAGATAGACAACAGCGCCAGGCTTCTCGATCCTTCTCCTCTGCTCTCAACTTCATTTCTATATGGAACAGAGTACAATTGCTAG

Protein sequence

MMMTWSIKLAASLAGSFMESDATYPRLISLTGAFFTLKPTLSPGRASRRDSWCISTDFTSVVRRRAFQSFDRKKIDNSARLLDPSPLLSTSFLYGTEYNC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26425Spo26425gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26425.1Spo26425.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26425.1.CDS.3Spo26425.1.CDS.3CDS
Spo26425.1.CDS.2Spo26425.1.CDS.2CDS
Spo26425.1.CDS.1Spo26425.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26425.1.utr3p.1Spo26425.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26425.1.exon.3Spo26425.1.exon.3exon
Spo26425.1.exon.2Spo26425.1.exon.2exon
Spo26425.1.exon.1Spo26425.1.exon.1exon


Homology
[Close]
BLAST of Spo26425.1 vs. UniProtKB/TrEMBL
Match: A0A0A9DWI7_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.600e-17
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 1 

		  

Query: 1  MMMTWSIKLAASLAGSFMESDATYPRLISLTGAFFTLKPTLSPGRASRRDSWCISTDFTS 60
          MM+T ++KLAASLAGS +E +ATYPR  SLT  FFTL PTLSPGRAS  DSWCISTDFTS
Sbjct: 1  MMITCAVKLAASLAGSSLELEATYPRFRSLTATFFTLNPTLSPGRASCIDSWCISTDFTS 60

Query: 61 VVR 64
          VVR
Sbjct: 61 VVR 63
[Close]
BLAST of Spo26425.1 vs. UniProtKB/TrEMBL
Match: J3LKK5_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-16
Identity = 47/63 (74.60%), Postives = 49/63 (77.78%), Query Frame = 1 

		  

Query: 1  MMMTWSIKLAASLAGSFMESDATYPRLISLTGAFFTLKPTLSPGRASRRDSWCISTDFTS 60
          MMMTW +KLAASLAGS  E +ATYPR  S T  F TL PTLSPGRAS R SWCISTD TS
Sbjct: 1  MMMTWEVKLAASLAGSSFELEATYPRFRSFTATFLTLNPTLSPGRASWRASWCISTDLTS 60

Query: 61 VVR 64
          VVR
Sbjct: 61 VVR 63
[Close]
BLAST of Spo26425.1 vs. UniProtKB/TrEMBL
Match: A0A0P6AD72_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-8
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 1 

		  

Query: 1  MMMTWSIKLAASLAGSFMESDATYPRLISLTGAFFTLKPTLSPGRASRRDSWCISTDFTS 60
          ++ T S+   A  +G F+ES A  PR  SLT  F TLKPTLSPG AS R SWC STD TS
Sbjct: 28 IVRTVSLSFLALNSGVFLESPAPKPRRNSLTETFLTLKPTLSPGTASSRASWCTSTDLTS 87

Query: 61 VV 63
          VV
Sbjct: 88 VV 89
The following BLAST results are available for this feature:
BLAST of Spo26425.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26425.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0A9DWI7_ARUDO6.6e-1776.1Uncharacterized protein OS=Aru... [more]
J3LKK5_ORYBR1.1e-1674.6Uncharacterized protein OS=Ory... [more]
A0A0P6AD72_9CRUS1.9e-858.0Uncharacterized protein (Fragm... [more]
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BLAST of Spo26425.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26425.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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