Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACGTGCTTTATATTTCCAACCTTAAATGCAACAACATACCATATTCCGTCTCCCAACATTGGAAAATAGATTTTCTCATATATGAAAAAAAAAGCCCAAACCCTACTAAGATTATAAGATTCGTTCGTAATTACAAGTTGCCCAATCTCTTAAAACCCAGCCCAAAAGTATGTAACAGAATCCAATTCCAATACCTTTCTTTCCCACCACCCCACGCACGCACTAATTGAACCACCAACATTTCCAATGTCAAATGTAAAACACCGCCTCGCCTCCCCCACAAAACAAAAATGAAAAACCCGTTTCGCGCCTAAAGAAACGCGCACCTCATTTTGTTTTCAAAAATGTCTTCTTCATCTCCCCCTAATGCCCAAATGTCTCGCTGTTTAAAACTTCGCACCCTCCTCAAAAGATCCCTCAACTTCCTCCCTCCTCTTTCTCTCTCCTCCTCCTCCTCTCCCGCCGCCGCCGCAACAACAACAACCTCTCTTACTTCCTCCGCAGCTAATTCTCTCTCCACCGTAGCCGCCCCTACAATGGAAGACTTCAAGCAGGCTCTCCGTACGCGCCTCTGTATCATCGGGAGTGGGCCGGCGGCCCACACCGCGGCTATCTACGCATCACGGGCTGAGCTCAAGCCCATTCTCTTTGAAGGATGGATGGCCAACGGAATCGCGCCAGGTGGACAGCTAACAACAACCACCGACGTCGAGAATTTCCCCGGATTTCCTGAAGGAATTTTCGGCCTAGACATCACCGACAAGTTTCGCCAGCAATCCTTGCGTTTCGGTACCGAAATCTTGACTGAAACGGTTACCTCGGTCGACTTCTCAACGACGCCGTTTAAGATCTTATCCGCCGAGTCGAAAACTGTACTCGCTGACTCAGTCATTATAGCCACGGGTGCGGTGGCGAAGAAGCTGGAATTTCCGGGGTCAGGAGAAGAAGGAGGGTTCTGGAACAAAGGAATATCGGCTTGCGCTGTGTGCGACGGCGCGGCGCCGATTTTCAGGAACAAGCCGTTGGCGGTGATTGGAGGCGGTGATTCGGCGATGGAAGAGGCCAATTTCTTGACCAAGTATGGTTCGAAGGTGTATATAATTCATAGGAGAGGGGAATTTAGGGCTTCCAAGATTATGCAAAAGAGGGCAATAGAAAACCCTAAGATTGAGGTTTTGTGGAATTCGACGGTGACGGAGGCATATGGGGATGCTGAGAAAGAAAATAGGGTTTTGGGAGGGCTGAAGGTCAAGGATGTGGTCAGTGGGGAGGTTAAGGACTTGCAAGTTTCTGGGTTGTTTTTTGCTATCGGGCATGAACCAGCTACTAAGTTTTTGGGTGGGCAGCTGGAGTTGGATGCTGATGGCTATGTGGTGACTACACCGGGGACGACGAAGACCAGTGTTAAAGGTGTTTTTGCTGCTGGTGATGTTCAGGATAAGAAGTATAGGCAGGCTGTCACTGCTGCTGGGACTGGTGAGTGGCATTTTGGTTCTTCTATTTGTTTATTTGAAATATTGCTTTTATGGTGTGGTTTGATCTGTGTTCTGTTCTAGCATTGCTGTGTTTTAATGGTAATGCTTATGTATTTAGAGATTTAGAGGAATTAGAGGTGTGAATGTGTGATGTTACTTGGAAAGTCCTAGGTAAGATTAGCTGAGTAGGACAATCGTATGTCATTGTAATAATTTGGTATCACCTTTCTGTGTGGTATTTGTCAAGTCATTTTAATGGCTACCTAGTCGCGTGCTTGGGTTAGAAGACTATTGAGGTTTGGGGTGTTGATCTCTATCACTTTGAGATTTGTGTGACTCATCTGATAGAAGGGCTTGTGTATAGTGGTGCTATATGAGCGTGAAAGTGTGCATAAGAGATTACAATTCATCCGGGAGAGTAGGTTTAGTTAGGACTTGGTTGGGCTTACACTGACGTACATTATTGTCCTAATATTTTGCTGCCGTTTTGAAATTGTGGAATTATCTAAGACTTTGATGGTTTTCGGTTTGATCATTGTGTGTGTTGCATCGTTATATTTTGACGCTGGATCTTGTGAAGCTGAAATCACAATGTAGCAAGAGTTGTGATGCACTTTGGGGAAAAAATGTAATTGAGCTTAGGTTGAGCAGGTATCATTTTAAATATATTTTGGGGTTGTGATTCAACGTGTGGAATTTAATTAGGAAACTATAATGCCTAATTTGTTGGGTTGGAAAGACCTGGGTGTCTATCTCTGTTACTTGAGAATGTGTGTAGGTTTATCGTTTATGTATTTGAAGGACTTGTGTGTTTGTTGTGTTGGGGGAAAAAGATAAAGACAATACTAATCTAGAAATGGTGGAGAGAGAGCGCATCAACTTTTAGCTTTATTTATTGTCCCCTGAGGATTAAAATTGCTACCAAAAATGATTTCTCAATTCAATACAAATGATGGACAGTGAAGAAATGCCACTTCACCAAGTCTGATGAGAATTGGTTCTTGTGTTATTTTAATAATAACTTGAATAGCTGATGTCAACTCCCACTGCAATATCACAGTGTGGACTCCTGTGGAGTATCGGAACCTATGTTAACAGTGCAAATGTTCAATATCAGTTCCCTAAGCTAATGCACTTTTGTGCATGTTTAATACTTACCTTCCTGATATTCAGTTCTGTTGGCCAAAAAATCTTTCATTTCTCTGAATCCAAAGATCATACAGAGCTCCAGTAAAGCACGTTCGTAAACCTGATGTGCAAGTTTTTCTTCTACATGCTGATGCAGCTTTAGCCACCTCTGCGCCAAAAGTAAAACATCTCTTCGAATCTTCAACAGTGACAACACTCACTTTCAAATTCTGTCGGTAAAACTATATAGGGAAAACAGGTGCTCTATGGACTTCAAGCCTGTACTACAGAAACAACACAACTGATCAGTTTGGATATTCCATTTCAGAAGTCTGTCTTTTGTTGCTAATCTTCTAAGGATAGGAAGCCAAGTAATGAAAATGGCTTTTGAACTAGCATGGCTTTTGAACTAGTAATGAAAACAGCCTTTTCCACCCAACGTGATGAGTAGTACCTTGAATGGCTGAATAAATTTGCTTTATAGTGGTTTACACTTGATAGACTTGTAAGTGTTTACTTCCCAGTTTCCACCCTTACGGGGTATCGGACTTTATGGTCTGGTCTTATTTGTTTATGTCCTATAATTGATCATGCTTTTATATGATTTGCAATAGTTTTGGAATTTGGACATATGATGCACATTCGTGGGTTGGTTTAATTGAGCTTTGGTTGGAAGTACAAAAGCGTCTTGATTTTTGGTGTCGAGATAAAATGTGTGATTCGCCAAGATATTCTTCTAATTGTTAGTTTGATTGAATTTCTAAAGGTTAGGTTTTTCTTTGTTATTTGGAGATTGTGTAGGTTTATCTGGTTGAAAGGCAGATCTCTTAGGTGTTTGTTGTGTTACGGAGTTCTAAAGGGGAGGATGGGAAGAATCTAGAGTTTTTCTTTTCCTTTCCCTTTCCCTTTGTATTTCATATTTTCATGACAATCTCTCTATATTGCTGGTATGCTGCTAATTAGAGGTCAACAACATGTTTGATCCACAAGAGCCCTGAATCACTTACAAAAGCTAAGTTTTAATGGCCTCATGCCCTTTCACTCATTGCTAATCACCAGGCTCATATGTGTCAAGTTGTTAACCCCTCTTCACCAGACAATTAGGGACCCTTTGTTTTGGGGGAAAAGGGAAAGAGAAACAGTCCCCTTCATTCCTTTTTTGTTGTTTGTTGACCATTTTAATCATTCCCCTCTTCCTCTACCATGATTCCCCACCCCCCCAAGGGAATCAACCTTACGCCAAATTCATGTTTACTCATCTTCTTTGACCAACACTTTGATCAGCCTTGACTAACTTAATACACCATAGCAGCACTACCTGACTCCACGACACCAACCACCAAGTCTACCAACACCGCCATACTGCCGGAAACCACCTAA AACGTGCTTTATATTTCCAACCTTAAATGCAACAACATACCATATTCCGTCTCCCAACATTGGAAAATAGATTTTCTCATATATGAAAAAAAAAGCCCAAACCCTACTAAGATTATAAGATTCGTTCGTAATTACAAGTTGCCCAATCTCTTAAAACCCAGCCCAAAAGTATGTAACAGAATCCAATTCCAATACCTTTCTTTCCCACCACCCCACGCACGCACTAATTGAACCACCAACATTTCCAATGTCAAATGTAAAACACCGCCTCGCCTCCCCCACAAAACAAAAATGAAAAACCCGTTTCGCGCCTAAAGAAACGCGCACCTCATTTTGTTTTCAAAAATGTCTTCTTCATCTCCCCCTAATGCCCAAATGTCTCGCTGTTTAAAACTTCGCACCCTCCTCAAAAGATCCCTCAACTTCCTCCCTCCTCTTTCTCTCTCCTCCTCCTCCTCTCCCGCCGCCGCCGCAACAACAACAACCTCTCTTACTTCCTCCGCAGCTAATTCTCTCTCCACCGTAGCCGCCCCTACAATGGAAGACTTCAAGCAGGCTCTCCGTACGCGCCTCTGTATCATCGGGAGTGGGCCGGCGGCCCACACCGCGGCTATCTACGCATCACGGGCTGAGCTCAAGCCCATTCTCTTTGAAGGATGGATGGCCAACGGAATCGCGCCAGGTGGACAGCTAACAACAACCACCGACGTCGAGAATTTCCCCGGATTTCCTGAAGGAATTTTCGGCCTAGACATCACCGACAAGTTTCGCCAGCAATCCTTGCGTTTCGGTACCGAAATCTTGACTGAAACGGTTACCTCGGTCGACTTCTCAACGACGCCGTTTAAGATCTTATCCGCCGAGTCGAAAACTGTACTCGCTGACTCAGTCATTATAGCCACGGGTGCGGTGGCGAAGAAGCTGGAATTTCCGGGGTCAGGAGAAGAAGGAGGGTTCTGGAACAAAGGAATATCGGCTTGCGCTGTGTGCGACGGCGCGGCGCCGATTTTCAGGAACAAGCCGTTGGCGGTGATTGGAGGCGGTGATTCGGCGATGGAAGAGGCCAATTTCTTGACCAAGTATGGTTCGAAGGTGTATATAATTCATAGGAGAGGGGAATTTAGGGCTTCCAAGATTATGCAAAAGAGGGCAATAGAAAACCCTAAGATTGAGGTTTTGTGGAATTCGACGGTGACGGAGGCATATGGGGATGCTGAGAAAGAAAATAGGGTTTTGGGAGGGCTGAAGGTCAAGGATGTGGTCAGTGGGGAGGTTAAGGACTTGCAAGTTTCTGGGTTGTTTTTTGCTATCGGGCATGAACCAGCTACTAAGTTTTTGGGTGGGCAGCTGGAGTTGGATGCTGATGGCTATGTGGTGACTACACCGGGGACGACGAAGACCAGTGTTAAAGGTGTTTTTGCTGCTGGTGATGTTCAGGATAAGAAGTATAGGCAGGCTGTCACTGCTGCTGGGACTGCACTACCTGACTCCACGACACCAACCACCAAGTCTACCAACACCGCCATACTGCCGGAAACCACCTAA ATGTCTTCTTCATCTCCCCCTAATGCCCAAATGTCTCGCTGTTTAAAACTTCGCACCCTCCTCAAAAGATCCCTCAACTTCCTCCCTCCTCTTTCTCTCTCCTCCTCCTCCTCTCCCGCCGCCGCCGCAACAACAACAACCTCTCTTACTTCCTCCGCAGCTAATTCTCTCTCCACCGTAGCCGCCCCTACAATGGAAGACTTCAAGCAGGCTCTCCGTACGCGCCTCTGTATCATCGGGAGTGGGCCGGCGGCCCACACCGCGGCTATCTACGCATCACGGGCTGAGCTCAAGCCCATTCTCTTTGAAGGATGGATGGCCAACGGAATCGCGCCAGGTGGACAGCTAACAACAACCACCGACGTCGAGAATTTCCCCGGATTTCCTGAAGGAATTTTCGGCCTAGACATCACCGACAAGTTTCGCCAGCAATCCTTGCGTTTCGGTACCGAAATCTTGACTGAAACGGTTACCTCGGTCGACTTCTCAACGACGCCGTTTAAGATCTTATCCGCCGAGTCGAAAACTGTACTCGCTGACTCAGTCATTATAGCCACGGGTGCGGTGGCGAAGAAGCTGGAATTTCCGGGGTCAGGAGAAGAAGGAGGGTTCTGGAACAAAGGAATATCGGCTTGCGCTGTGTGCGACGGCGCGGCGCCGATTTTCAGGAACAAGCCGTTGGCGGTGATTGGAGGCGGTGATTCGGCGATGGAAGAGGCCAATTTCTTGACCAAGTATGGTTCGAAGGTGTATATAATTCATAGGAGAGGGGAATTTAGGGCTTCCAAGATTATGCAAAAGAGGGCAATAGAAAACCCTAAGATTGAGGTTTTGTGGAATTCGACGGTGACGGAGGCATATGGGGATGCTGAGAAAGAAAATAGGGTTTTGGGAGGGCTGAAGGTCAAGGATGTGGTCAGTGGGGAGGTTAAGGACTTGCAAGTTTCTGGGTTGTTTTTTGCTATCGGGCATGAACCAGCTACTAAGTTTTTGGGTGGGCAGCTGGAGTTGGATGCTGATGGCTATGTGGTGACTACACCGGGGACGACGAAGACCAGTGTTAAAGGTGTTTTTGCTGCTGGTGATGTTCAGGATAAGAAGTATAGGCAGGCTGTCACTGCTGCTGGGACTGCACTACCTGACTCCACGACACCAACCACCAAGTCTACCAACACCGCCATACTGCCGGAAACCACCTAA MSSSSPPNAQMSRCLKLRTLLKRSLNFLPPLSLSSSSSPAAAATTTTSLTSSAANSLSTVAAPTMEDFKQALRTRLCIIGSGPAAHTAAIYASRAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPEGIFGLDITDKFRQQSLRFGTEILTETVTSVDFSTTPFKILSAESKTVLADSVIIATGAVAKKLEFPGSGEEGGFWNKGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRGEFRASKIMQKRAIENPKIEVLWNSTVTEAYGDAEKENRVLGGLKVKDVVSGEVKDLQVSGLFFAIGHEPATKFLGGQLELDADGYVVTTPGTTKTSVKGVFAAGDVQDKKYRQAVTAAGTALPDSTTPTTKSTNTAILPETT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo26442.1 vs. NCBI nr
Match: gi|902205852|gb|KNA15295.1| (hypothetical protein SOVF_099410 [Spinacia oleracea]) HSP 1 Score: 724.9 bits (1870), Expect = 7.500e-206 Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1
BLAST of Spo26442.1 vs. NCBI nr
Match: gi|731339051|ref|XP_010680645.1| (PREDICTED: thioredoxin reductase NTRB-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 627.9 bits (1618), Expect = 1.200e-176 Identity = 329/377 (87.27%), Postives = 338/377 (89.66%), Query Frame = 1
BLAST of Spo26442.1 vs. NCBI nr
Match: gi|870857336|gb|KMT08896.1| (hypothetical protein BVRB_6g136160 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 582.4 bits (1500), Expect = 6.000e-163 Identity = 294/314 (93.63%), Postives = 300/314 (95.54%), Query Frame = 1
BLAST of Spo26442.1 vs. NCBI nr
Match: gi|1009129708|ref|XP_015881912.1| (PREDICTED: thioredoxin reductase 2-like [Ziziphus jujuba]) HSP 1 Score: 515.4 bits (1326), Expect = 9.000e-143 Identity = 267/348 (76.72%), Postives = 307/348 (88.22%), Query Frame = 1
BLAST of Spo26442.1 vs. NCBI nr
Match: gi|720032992|ref|XP_010266287.1| (PREDICTED: thioredoxin reductase 1-like [Nelumbo nucifera]) HSP 1 Score: 514.2 bits (1323), Expect = 2.000e-142 Identity = 272/367 (74.11%), Postives = 304/367 (82.83%), Query Frame = 1
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R720_SPIOL (Thioredoxin reductase OS=Spinacia oleracea GN=SOVF_099410 PE=3 SV=1) HSP 1 Score: 724.9 bits (1870), Expect = 5.200e-206 Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F059_BETVU (Thioredoxin reductase OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136160 PE=3 SV=1) HSP 1 Score: 582.4 bits (1500), Expect = 4.200e-163 Identity = 294/314 (93.63%), Postives = 300/314 (95.54%), Query Frame = 1
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Match: A0A166HSQ7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003000 PE=4 SV=1) HSP 1 Score: 511.1 bits (1315), Expect = 1.200e-141 Identity = 270/362 (74.59%), Postives = 304/362 (83.98%), Query Frame = 1
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Match: A0A059AI06_EUCGR (Thioredoxin reductase OS=Eucalyptus grandis GN=EUGRSUZ_J02565 PE=3 SV=1) HSP 1 Score: 506.9 bits (1304), Expect = 2.200e-140 Identity = 270/368 (73.37%), Postives = 309/368 (83.97%), Query Frame = 1
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L0X1_CUCSA (Thioredoxin reductase OS=Cucumis sativus GN=Csa_3G000140 PE=3 SV=1) HSP 1 Score: 506.9 bits (1304), Expect = 2.200e-140 Identity = 262/356 (73.60%), Postives = 298/356 (83.71%), Query Frame = 1
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2) HSP 1 Score: 502.7 bits (1293), Expect = 3.800e-141 Identity = 265/345 (76.81%), Postives = 295/345 (85.51%), Query Frame = 1
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=3) HSP 1 Score: 493.4 bits (1269), Expect = 2.300e-138 Identity = 260/363 (71.63%), Postives = 302/363 (83.20%), Query Frame = 1
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Match: NTRA_ORYSJ (Thioredoxin reductase NTRA OS=Oryza sativa subsp. japonica GN=Os06g0327300 PE=3 SV=2) HSP 1 Score: 472.2 bits (1214), Expect = 5.500e-132 Identity = 250/367 (68.12%), Postives = 293/367 (79.84%), Query Frame = 1
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Match: NTRB_ORYSJ (Thioredoxin reductase NTRB OS=Oryza sativa subsp. japonica GN=NTRB PE=2 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 4.300e-129 Identity = 230/306 (75.16%), Postives = 266/306 (86.93%), Query Frame = 1
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TRR1 PE=3 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 2.800e-104 Identity = 189/303 (62.38%), Postives = 236/303 (77.89%), Query Frame = 1
BLAST of Spo26442.1 vs. TAIR (Arabidopsis)
Match: AT2G17420.1 (NADPH-dependent thioredoxin reductase A) HSP 1 Score: 502.7 bits (1293), Expect = 2.100e-142 Identity = 265/345 (76.81%), Postives = 295/345 (85.51%), Query Frame = 1
BLAST of Spo26442.1 vs. TAIR (Arabidopsis)
Match: AT4G35460.1 (NADPH-dependent thioredoxin reductase B) HSP 1 Score: 493.4 bits (1269), Expect = 1.300e-139 Identity = 260/363 (71.63%), Postives = 302/363 (83.20%), Query Frame = 1
BLAST of Spo26442.1 vs. TAIR (Arabidopsis)
Match: AT2G41680.1 (NADPH-dependent thioredoxin reductase C) HSP 1 Score: 301.6 bits (771), Expect = 7.200e-82 Identity = 164/354 (46.33%), Postives = 234/354 (66.10%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26442.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26442.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26442.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo26442.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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