Spo26481.1 (mRNA)

Overview
NameSpo26481.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionDelta-1-pyrroline-5-carboxylate synthase (P5CS) (Glutamate 5-kinase) (GK) (2.7.2.11) (Gamma-glutamyl kinase) (Gamma-glutamyl phosphate reductase) (GPR) (1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)
LocationSpoScf_01113 : 113549 .. 116758 (-)
Sequence length882
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGAGGGGAAAATACAACGACCACTACAACGGCCTATCATCTGATAAGTCTTATGCAACGGCTATACGAAGTTAATAAAAAAATCTATAATTATCCCGTTATTTGTCAGCTTGTCGCACACTCACACAAATCAATCTTAAACCCAAGTTACCTAACCCTCCTAAATGAGAAACTTTTTCCCCAATTCATTTCAAAATATTCAAGTTCATGTGTTCGTGAAAAGGAGAGGAAAAGAAGAGGAGAGAGAAACCCTAGCTAATTCCCTTTTCTATGCCTCCAAATCTAAACCCCCAATTCAATCTTCTGCCTTTGATGAAGTAGCGAACTGGTTAGGGAATGGGGATCCAGAAATTCAAGCCTCGTCGCCGTTTGAATTCGATGTGGTTGCTCCGGTAAGTGATTCCCCTTTTTTGGGTGTTTTTAGCCAAATTGTTTCTAGTTACTTCTTTAATGCCCCCTTATTCAAATTAGTTTCTTGCGAAAATTTTAAATTTTAGGGTTAATGTTGTTAATAATGGTTTATGTAATTACAACTTATAAGTCGATGGGCGAATTTTGATTTGATTCATTTAAATTTAGGGTTTAGCTAGAAGAGTGATTTGGGTATAAAACAAGTTAGGTGTAATTAAATCTTACAATCTTTCCATAGGAAGAATCTGATTAAAAATTAAATAGAGTGGAATTCATTGACTGGAGTTTCAAGAAGGAATACGATTAGTTTTCCTCTCATGTTGCCTCTCTTCTGCGAACTCCTTCATATCCCCCAGCAAACACAAAACTATTAGAGGTTCTAGTAAAACTTTACTTTTTTTGAGGGGTAGTAAAACTTTACTTAAAAAATGATTGTTTAATGCTTAAGAGAAGAAATCTATCTTCAATGTTTTGTACAATTAAGGTTAAAATAACCAATAGTTGCATACTTTAGTGGATTTTGTTGATTGCATAGAGTAACAAAGAACATTGAGAATAATGGATTTTGAAATATTGTCTCTTGATTGTTGATTCACTTTCTCAACTCTCTATTTCTGATTAACTAACTAAACCACAGAGAAATTGTTATGATTTTCAAAAATTATTATGTTATTTACATTTCCTAGGATGGAAATTTGATACTCTTTCCTTCGATTGGCTCTAAATATAGTGCTAAGTAACTTAATGGGGTTGTGTGGATGATGAGAATAGTTTGATGCCAGTCTTAGGTGTTTGAACTTTTTGTTAATTGTTGGATCAACTTTATATCCATTTCATTATGTGTGTTGGCAGCTTGGCACTAAGATAAAGCAGGTGGAAACTAGGTGCACTTTGTGGATAGGTGAATTAGTTGCCATCTCTTTTCAAGTTTTACCTTGGTTGAGAATCTATGGGTTCTTTACCAGTATCATATCTGGTCAAGCCTATACAAACTATGTCCCTACACTTTTTCTTTGTGTGGATCAGGGAGTTAAACATTGATGGATTTGTAGTCATTTTTGTGAGTTCAGGTGTTGTTATTGTTGGTCGTCAGAGGATTAGATTAAAGAAATTGGATTGGTGCTGTTAGTGTTGGTCGTTAGAGGCTTAGCCATGGTTGCCAGCAGGTTTGTGATTTTCTTTCTCTTTAAGCTTGCCATTGCCTAAGATTTCCCTTGTGTCGTATGAAGTAATTTTTCTTTTTGTGATAAATGCATAAAAGAACCATAAAATATGGAAGTTTTACTTTCCGGGCATCAATCAGTATTGAGCTCTATAGTTGGCTTCTCGAGTCATTACTCATTCCTGGAAACTGTTGGCTTTGTCAAGGGTTATTCTTGATCTTAGTACTTGGAGATGTGGTAAAAGAATCTTGGGCCATTCTGGCGAGAAGTTGTGATTAGTAGATAGAAATGCTTAGTGATCGAAGATACCATTGTGGGCGAATACCCTTGCATTGTACAAACTAATTTTGAACTTTTGGTTTCTTCTTTCTCATGTTAAAAGCTTAAAATCTATAATGTAAAAGGAACTATCACGTGATATGTTACCTTTCTTATGTTAAAAATTAATTTTTGAACTTCAAGTATATTTTTAATAGTGCAATTTTGCTGACCTCCAAAACCCGCAAGCTGAACAAAGCATGTGCTGTTGTTAGGCATAATGGTCTCATGGCTCTCTATGACACATTATTCAATTAGGTCAGTATTTAAGTAACTAGGTGTCTACTTATGATTGTGGAAGAAGCTGCCTCTCATTGGCCAAGCTTATTAGCATATGTTGATTATATAATGAATGTTTTTTTAGGTGAACCTGGTTGCTGCTCAACTTCTTGTTACAGATAACGACTTTAGGGATCCAAATTTTAGATCACAACTTTTTTAAACTGAAATCAGTTACTGGATTCAAAAGTGGTACCTATTCTAAATGAAAATGATGCGGTAAGTACCCGAAATGCTCCTTATGAGGTATGTACTGTTTAAAAACTTAATTTTATTTTCCCCTTTGTAACGTGGGTTCTACATTAAACAAGGTAAAAGCAGTGACCAGATAGCTCAAAACAAGTAATATCATTTGAATAATCACTGAGGGTGGGGGGAAGCAGAGCAACTAGATCGTTTGATTTAGCAAACCTGGCAGTTTAATATTTTATAATATTAACTATGTTGAAAGTAAATAACTGGAAGAAAATGATATTATATAGCGTATTTGTTCCTCATATAAGAACATGATTTGTATGTCATTGAGGGTTTCAGATCAGCCACAAAAGATATTATTAAGTTTATTGGTAAACCTATTTTCTTGATTATCTTACACAATTTCCTTTACGTGGTTGTTATGTGTAATTTCTTTGAAATTGACAAGGCAACAAGCAATATTATAAAGTGGCACTCTATTTCACCAGGATGCATACTTATGGTCTTCAGCTAAAGAAGCTGGTTCTCTGCAATTTTGTTTGACACCTAGGTAGAGAGAAAGCGTACATGGTACTGGTTTGGAAATGGAGGATCATAAGAATGATGGCGAGCTTCACAGGACTTATATGGCAGATAGTCAGTCTCTAAAATATCTTCTTACATATTATGTTATACTCTTTCTTAGGCTAACAGGGATTTAATTAGTTTTTTAGCTTCTTCTTTTGTTGAAATTTTGTTTCTTAGCTAATTCAGTAGCATTTCATTTTGTAACCCACTGATGGGAAAGGCTAAATTGTATATGTACATTTTCAATCTCAATGAAATATCATTACTTATTATCA

mRNA sequence

TTAGGAGGGGAAAATACAACGACCACTACAACGGCCTATCATCTGATAAGTCTTATGCAACGGCTATACGAAGTTAATAAAAAAATCTATAATTATCCCGTTATTTGTCAGCTTGTCGCACACTCACACAAATCAATCTTAAACCCAAGTTACCTAACCCTCCTAAATGAGAAACTTTTTCCCCAATTCATTTCAAAATATTCAAGTTCATGTGTTCGTGAAAAGGAGAGGAAAAGAAGAGGAGAGAGAAACCCTAGCTAATTCCCTTTTCTATGCCTCCAAATCTAAACCCCCAATTCAATCTTCTGCCTTTGATGAAGTAGCGAACTGGTTAGGGAATGGGGATCCAGAAATTCAAGCCTCGTCGCCGTTTGAATTCGATGTGGTTGCTCCGGTGAACCTGGTTGCTGCTCAACTTCTTGTTACAGATAACGACTTTAGGGATCCAAATTTTAGATCACAACTTTTTTAAACTGAAATCAGTTACTGGATTCAAAAGTGGTACCTATTCTAAATGAAAATGATGCGGATGCATACTTATGGTCTTCAGCTAAAGAAGCTGGTTCTCTGCAATTTTGTTTGACACCTAGGTAGAGAGAAAGCGTACATGGTACTGGTTTGGAAATGGAGGATCATAAGAATGATGGCGAGCTTCACAGGACTTATATGGCAGATAGTCAGTCTCTAAAATATCTTCTTACATATTATGTTATACTCTTTCTTAGGCTAACAGGGATTTAATTAGTTTTTTAGCTTCTTCTTTTGTTGAAATTTTGTTTCTTAGCTAATTCAGTAGCATTTCATTTTGTAACCCACTGATGGGAAAGGCTAAATTGTATATGTACATTTTCAATCTCAATGAAATATCATTACTTATTATCA

Coding sequence (CDS)

ATGAGAAACTTTTTCCCCAATTCATTTCAAAATATTCAAGTTCATGTGTTCGTGAAAAGGAGAGGAAAAGAAGAGGAGAGAGAAACCCTAGCTAATTCCCTTTTCTATGCCTCCAAATCTAAACCCCCAATTCAATCTTCTGCCTTTGATGAAGTAGCGAACTGGTTAGGGAATGGGGATCCAGAAATTCAAGCCTCGTCGCCGTTTGAATTCGATGTGGTTGCTCCGGTGAACCTGGTTGCTGCTCAACTTCTTGTTACAGATAACGACTTTAGGGATCCAAATTTTAGATCACAACTTTTTTAA

Protein sequence

MRNFFPNSFQNIQVHVFVKRRGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAPVNLVAAQLLVTDNDFRDPNFRSQLF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26481Spo26481gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26481.1Spo26481.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26481.1.utr5p.1Spo26481.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26481.1.CDS.2Spo26481.1.CDS.2CDS
Spo26481.1.CDS.1Spo26481.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26481.1.utr3p.2Spo26481.1.utr3p.2three_prime_UTR
Spo26481.1.utr3p.1Spo26481.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26481.1.exon.3Spo26481.1.exon.3exon
Spo26481.1.exon.2Spo26481.1.exon.2exon
Spo26481.1.exon.1Spo26481.1.exon.1exon


Homology
[Close]
BLAST of Spo26481.1 vs. NCBI nr
Match: gi|902192737|gb|KNA12106.1| (hypothetical protein SOVF_128940, partial [Spinacia oleracea])

HSP 1 Score: 117.1 bits (292), Expect = 1.800e-23
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 1 

		  

Query: 21 RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAPVNLV 80
          RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAP+   
Sbjct: 1  RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAPLGTK 60

Query: 81 AAQL 85
            Q+
Sbjct: 61 IKQV 64
[Close]
BLAST of Spo26481.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R012_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_128940 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.300e-23
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 1 

		  

Query: 21 RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAPVNLV 80
          RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAP+   
Sbjct: 1  RGKEEERETLANSLFYASKSKPPIQSSAFDEVANWLGNGDPEIQASSPFEFDVVAPLGTK 60

Query: 81 AAQL 85
            Q+
Sbjct: 61 IKQV 64
The following BLAST results are available for this feature:
BLAST of Spo26481.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902192737|gb|KNA12106.1|1.8e-2389.0hypothetical protein SOVF_1289... [more]
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BLAST of Spo26481.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R012_SPIOL1.3e-2389.0Uncharacterized protein (Fragm... [more]
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BLAST of Spo26481.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26481.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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