Spo26512.1 (mRNA)

Overview
NameSpo26512.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionAssociated molecule with the SH3 domain of STAM 1 isoform 2
LocationSpoScf_01524 : 62078 .. 64458 (-)
Sequence length1351
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGGTTCGTTTGGGTCACCGAGGATATCCCTGTTGAAGTGAGGGCGAATATTAACGATGTTCTAGGGAATATCGTTAATCTCATTAATTAAAAGAAGGAGAAAGTATTTAATATTTAAGGTAATTGTTTTCTTTATGCATCTTTGACATTATTATAATTCTAAAAGATTGCTGTCTGACACATTAAACCCCAATTCTGTTTCTGTTTCTGGTTCTGTTTTGCTGTTAGTAATGGCTTTTTGTGCGAATGTGTAAAGCTAATGCTCTTTACTCACTGTCCTTAATTGGGTTAATCCTCAATGCTGTTATAAAACTGATGCCAGGAAATCTTGAAACAAGTGAATCTTAAGTTCTTAACATGCCAGTTATATTCTCTGGGTTTTGTTGATGCTTATACAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGGTATGTGGCTGTAGCATCTGATTTGTTTTCTAATTGCCAAACTGTTTCTTGACTTTCCATTATGAATGTAGGTTCGTTACCCCAGTATTATTGATACAAAATTTTAAATACTGTGAGATGATATTTGCTAAATCAGTTGTTTTATTTGTTTGTTGATCTTCTTTGGAAAAAAAATGTCCGAGTCTAAGATTGTATTTACGCGTGTTTGCCTGTTTGGTAGTGGAGACGGCTGTGAATTTTTTTCTGCAGCAATCTAGTTGATGCACTTGCATGTAGGTGTTGCGAAGAACTTCATACGTAGGGAGTATAATAGATTATGCATTTTGCACTGTCCAGATGCAAATGTAACTTACTATTTCTCGTTTATCAACACCTTAGAGATACATTAAATGATAATCTGTTTTGTAATCCTTTTTGAATGTATGAAACCTTACCTATGAGTATAATTTCCAAAATGCCTTCAATAGTATTAACGGTTGTTCCATTCTCCTAGAGATTTTTTCATACTGTCATGGCATTAGTGATTTACTCCTGAAATATCATATTTATATGGGGCCTGTATTGCATATATGAAACTCTAGTGAAATCTGACTATTTTGTCCATTCAGCTTGGGGTTTATTTGTTTATTATTTGTCCTGTGTCTGATGTTCCTGATACAGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAATTGCATCTTGGAGACCTTCTGCAATTATTCTCTTGGATGACCCTTTTCTTGCACAGAGTGTTCCTACTACCTTAAAAGCAACTAGTCGTCTGAATCTGAGAAAATGTCTTCGTACTGTGTCTAATCAGGTGGATAGATTACAACCTAAGACATTTAAGTTAACAGGGGAAATAGACAACACTGGTTCCATATCTATGTCCTTGTTGATTACTTTTCGAAGTACTAAAGAAGAGACGATTCAAATAGATTTCTCACTCGAAAATGATACAATTCAAGAAGTCGTCGCAAGAATTGCAACACAAAATGGTTGGTCAACTGCTGAAGTCACGCTGGTTTCTGAACTCATGGAAAAACGGGTAACAGCACTCACATCTTCTGATGGTCGTTGGAGCTGTTTCTGAATAACAACTCAGTATTGCACATCATTCTTTACAGATATGACTTGTTTCTTAAATTCTAGTTGAGTGTTATAGTTTTGTGGACATTATTCTAAGCTGTTTTTTGTTAAATTGTAGTTGAGTGTTATAGTTTTGTTCAGGTCAAAAGTAATCTGGCCTGCATTGTCAGTAAATTTGATTCATGTTAGTTTAATATGCAAAGTCCCACTGTTTTTGTTGATTTGTTATCATCATTAATTCATTACTATCCATGTTTTTCTATGTCACCG

mRNA sequence

ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGAAGGAGAAAGTATTTAATATTTAAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAATTGCATCTTGGAGACCTTCTGCAATTATTCTCTTGGATGACCCTTTTCTTGCACAGAGTGTTCCTACTACCTTAAAAGCAACTAGTCGTCTGAATCTGAGAAAATGTCTTCGTACTGTGTCTAATCAGGTGGATAGATTACAACCTAAGACATTTAAGTTAACAGGGGAAATAGACAACACTGGTTCCATATCTATGTCCTTGTTGATTACTTTTCGAAGTACTAAAGAAGAGACGATTCAAATAGATTTCTCACTCGAAAATGATACAATTCAAGAAGTCGTCGCAAGAATTGCAACACAAAATGGTTGGTCAACTGCTGAAGTCACGCTGGTTTCTGAACTCATGGAAAAACGGGTAACAGCACTCACATCTTCTGATGGTCGTTGGAGCTGTTTCTGAATAACAACTCAGTATTGCACATCATTCTTTACAGATATGACTTGTTTCTTAAATTCTAGTTGAGTGTTATAGTTTTGTGGACATTATTCTAAGCTGTTTTTTGTTAAATTGTAGTTGAGTGTTATAGTTTTGTTCAGGTCAAAAGTAATCTGGCCTGCATTGTCAGTAAATTTGATTCATGTTAGTTTAATATGCAAAGTCCCACTGTTTTTGTTGATTTGTTATCATCATTAATTCATTACTATCCATGTTTTTCTATGTCACCG

Coding sequence (CDS)

ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGAAGGAGAAAGTATTTAATATTTAAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAA

Protein sequence

MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAENPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCSTLLEINSVEAANVAMELINLHNWNGRRKYLIFKICFHPLPKEETLLRHSILGPNGLCRQWQPPVADKGLLSSNLALQLYLQRCKTWYFDVMPAALNEVTDPVAKQFIE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26512Spo26512gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26512.1Spo26512.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26512.1.CDS.4Spo26512.1.CDS.4CDS
Spo26512.1.CDS.3Spo26512.1.CDS.3CDS
Spo26512.1.CDS.2Spo26512.1.CDS.2CDS
Spo26512.1.CDS.1Spo26512.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26512.1.utr3p.1Spo26512.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26512.1.exon.4Spo26512.1.exon.4exon
Spo26512.1.exon.3Spo26512.1.exon.3exon
Spo26512.1.exon.2Spo26512.1.exon.2exon
Spo26512.1.exon.1Spo26512.1.exon.1exon


Homology
[Close]
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|902110351|gb|KNA03699.1| (hypothetical protein SOVF_206590 [Spinacia oleracea])

HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE 60
           MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE
Sbjct: 1   MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE 60

Query: 61  NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST 120
           NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST
Sbjct: 61  NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST 120

Query: 121 LLEINSVEAANVAMELINLHNWNG 145
           LLEINSVEAANVAMELINLHNWNG
Sbjct: 121 LLEINSVEAANVAMELINLHNWNG 144
[Close]
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|902211623|gb|KNA16781.1| (hypothetical protein SOVF_086080 [Spinacia oleracea])

HSP 1 Score: 69.3 bits (168), Expect = 9.700e-9
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           P PKEETLLRHSILGPNGLC QWQPPVADKG+
Sbjct: 188 PRPKEETLLRHSILGPNGLCGQWQPPVADKGV 219
[Close]
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|449439413|ref|XP_004137480.1| (PREDICTED: AMSH-like ubiquitin thioesterase 1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.600e-6
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           PLPKEETL RHSILGPNGL  QWQPP  DKG+
Sbjct: 173 PLPKEETLSRHSILGPNGLRGQWQPPTIDKGV 204
[Close]
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8X7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_206590 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.200e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE 60
           MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE
Sbjct: 1   MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAE 60

Query: 61  NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST 120
           NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST
Sbjct: 61  NPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCST 120

Query: 121 LLEINSVEAANVAMELINLHNWNG 145
           LLEINSVEAANVAMELINLHNWNG
Sbjct: 121 LLEINSVEAANVAMELINLHNWNG 144
[Close]
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBA7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086080 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.800e-9
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           P PKEETLLRHSILGPNGLC QWQPPVADKG+
Sbjct: 188 PRPKEETLLRHSILGPNGLCGQWQPPVADKGV 219
[Close]
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LTN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042390 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.800e-6
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           PLPKEETL RHSILGPNGL  QWQPP  DKG+
Sbjct: 173 PLPKEETLSRHSILGPNGLRGQWQPPTIDKGV 204
[Close]
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A164UVM4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.100e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           PLPKEETL RHSILGPNGL  QWQPP + KG+
Sbjct: 181 PLPKEETLSRHSILGPNGLRGQWQPPTSFKGI 212
[Close]
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: B9T631_RICCO (Amsh, putative OS=Ricinus communis GN=RCOM_1197790 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.100e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 157 PLPKEETLLRHSILGPNGLCRQWQPPVADKGL 189
           P PKEETL RHSILGPNGL  QWQPP +DKG+
Sbjct: 186 PQPKEETLSRHSILGPNGLQGQWQPPKSDKGV 217
[Close]
BLAST of Spo26512.1 vs. TAIR (Arabidopsis)
Match: AT1G48790.1 (associated molecule with the SH3 domain of STAM 1)

HSP 1 Score: 48.9 bits (115), Expect = 4.800e-6
Identity = 28/70 (40.00%), Postives = 32/70 (45.71%), Query Frame = 1 

		  

Query: 159 PKEETLLRHSILGPNGLCRQWQPPVAD-KGLLSSNLALQLYLQRCKTWYFDVMPAALNEV 218
           P EETL +HSILGP GL  QWQPP  D K    SN+     +        D  P   N  
Sbjct: 182 PNEETLSKHSILGPGGLSAQWQPPKYDTKVQYPSNIDFSPVVIPSFQQLVDSKPMITNGS 241

Query: 219 TDPVAKQFIE 228
            D   K  +E
Sbjct: 242 NDEPEKPIVE 251
The following BLAST results are available for this feature:
BLAST of Spo26512.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902110351|gb|KNA03699.1|1.3e-74100.hypothetical protein SOVF_2065... [more]
gi|902211623|gb|KNA16781.1|9.7e-990.6hypothetical protein SOVF_0860... [more]
gi|449439413|ref|XP_004137480.1|2.6e-681.2PREDICTED: AMSH-like ubiquitin... [more]
back to top
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q8X7_SPIOL9.2e-75100.Uncharacterized protein OS=Spi... [more]
A0A0K9RBA7_SPIOL6.8e-990.6Uncharacterized protein OS=Spi... [more]
A0A0A0LTN8_CUCSA1.8e-681.2Uncharacterized protein OS=Cuc... [more]
A0A164UVM4_DAUCA9.1e-678.1Uncharacterized protein OS=Dau... [more]
B9T631_RICCO9.1e-678.1Amsh, putative OS=Ricinus comm... [more]
back to top
BLAST of Spo26512.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo26512.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G48790.14.8e-640.0associated molecule with the S... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 25..52
score: -coord: 81..108
scor