Spo26995.1 (mRNA)

Overview
NameSpo26995.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02851 : 19299 .. 21899 (-)
Sequence length725
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGGTTTGTGTGTGATTGCTGCTGAATTTTCTCTTGCTCTATAGAAAACAAATTTTCGTTAATTTTCATGGAAAATAATTGAAATTTGGTATTTCCAGACTTAATTTTAATGAGAAATTAGACGAGGTATTAAACAAAGTATCTGCATGATTTTCTGAAGCTTGTAGTTGATGGATAACAAGTCTAGAACCATAAACCAACAACAAGTCTAGATGTTCCCATGGATGATGGTATAGATCGATATTAAAACATGAACCTTGAGTAGGACCTCGGTTGGCTCTTGTTGGATGCTTAGCTTTCCCCTTCGTGTGGAGTGTGCCTGTGGTTATGTGGTTTGGGTGGGTTAATGCTGCTTTAGAGGAATACTTTAGGGGAATACTGGGGTTTCCAGCAAGGTTAGGGGCGAAACTAGATTAGACCAAGGGAGGTGCATACGCTGATTGCCTGAGGTTAAAAGTATTTAGAAGTATTTAGAAGCAGCTTAGCATCATAAAATAATTTCGTTTGATGGCAAACGAGATGTATCAGTACATATTGGAATCAATGTTCGAATCCTACGACCGACCATCTAAGTATAAACTACTTCTAATTTTCATTTTGCTTATCGTTTTAACTTTGAAGTGACTCCTATATATTCCTCTCTGAATAAATGCTACCGAGTACTTAGTACTTTTTATTTTATTTGATCTTTGATTGTTTAATTTCCTGTCTTTAACCTATATTCTGTAATAATGCATCTTATCTCTCTTGATAAAAAAAACTTAATTAAAAAATAAGTAAATGAAGTAAATATGTTATGTGACCTGGAGCAAGTAAACAGGAGAATCCAGAGCTCCATCGTGCAGCAACTCAAAGTGAAGATGATCCTGAAACAGAAACGGGATATCCAGAATCAGATCACTTTTAATTTCAGAATGACGTGGAACTAAAAACTGATGATGATGACTATATTTTATTAGATATCTCATTGCACCCTAGCACATTGTCAGAGCATAGCTTGAAGTTCTTTTGTTGTTTCTGATTTCTTGTGTGACTTGTAGAAAGTAAACAGGAGAATCGCATCGTGTCACCTGCTAAAGGAGAAGAGTTACATTCTGCAATAGCTCAAACTGAAGATGATCGTGATACAGAAAAGGAAAGTCAAGGATCGGATAACTTTGAATATCAATATGATGTGAAACTAAAAACTGGGATGCAGACCACTGATTTAGGCAATAATCACGAGAGGGAGAAGAAGAAAATCGGTGCGCATATCCTTAATTTAAGTGATGATGAGAGAGTGAAGAAGAGAATCAGAAGGTATGCATCTGTAGAAACAGAACAAAATGAATGGTATTGTATGGGTCCACTTGGAGACATCAGGGGACCTTATAAAATGTCAATGCTCAAGCAATAGAATGAATTAGCTGCTCCATTTGCTAACAAGTTCAAAGTTTGGAAGATAGGCCAGTGTGAAAAAGATAGAGTGCCGTTGTCAGATTCTTGTCGCTTAGTCTCCACAAGTAAGTAATCTTATCTTTCAATCTGTACAGAGAAAATAGATAATTGTTCTTGCTGGCTTAACTACTTGATGCAAGTTTTTGCTTTAACTCTAATTTGTTGACCATTCAAAAGTCAGAACATTACAACGTAGGTAAGAAGAAGTCCCCATTCCTTTAAGTATCTAATTTATCTAATGAGATTACTACTCACATAAGGTTATTTTGGATTCTCCTATTTCTTCCGAGATTGTGACTTGTCTGATCCTTTAGTTACTTTCCTGCGATCAAGTCATGTAAAATCTCTTCAATCAAGTGAAAATAGGTCTAGAGATCCAAAATGAAGTATCTCTGGTGGCTTTGAGGAAGCCTTCCACCATATACATGAGATTTCTCAAAAGCGAAGGGGCATATCTGTACTTGTTGGCATATCTGTACCTGTTGGCATAGTTGTACCTGTTGGCATACCAGCCTATTACTACTCTTTTACACAAGTAGCACCTGTTGGAAGACCTGTTTTCTTTCTTTCTTCAAGCATAAGTAGTTAGCACTAGATTGATTTCTTTCTTTCTTCAAGCAGAAGTAGTTAGCACTAGCTTGATTTCTTTCTTTCTTCAAGCAGTTAGCACTAGCCTGCTTTCTCTCTTTCTTCAAGCACAAGCAGTTCACACTAGCCCTTCTTTCAGAATCAGAAGAAATTGGCAATTGGCAGAATATGGAATACATGTATATATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATCTGGAAGAGGTACGTGTATGTGTATTTTTGTTATTATAGATTTATCTCATTTTGTACTACTATATATGTGCTAGATTTTATCCAAACTTTACTAATTAATACATTATTTTGTTGAAATACAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGCGTAGATATTTATTAGTAGTTGTTTGTAGTCATTTTCTAGTTTTCAGAGATAGAAATAAACTATAACAAATTGTAGGTTATTTTTTGGAATACAATTATTTATACTTGTTGAACCAACTTTCTTGTTTGAATTAATACAAAATATTTTCGCAATTCTGCAAATCTCAG

mRNA sequence

ATGAACAAGAGGAATACTTTAGGGGAATACTGGGGTTTCCAGCAAGAAAGTAAACAGGAGAATCGCATCGTGTCACCTGCTAAAGGAGAAGAGTTACATTCTGCAATAGCTCAAACTGAAGATGATCGTGATACAGAAAAGGAAAGTCAAGGATCGGATAACTTTGAATATCAATATGATGTGAAACTAAAAACTGGGATGCAGACCACTGATTTAGGCAATAATCACGAGAGGGAGAAGAAGAAAATCGGTGCGCATATCCTTAATTTAAGTGATGATGAGAGAGTGAAGAAGAGAATCAGAAGAGTGCCGTTGTCAGATTCTTGTCGCTTAGTCTCCACAATTAGCACTAGCCTGCTTTCTCTCTTTCTTCAAGCACAAGCAGTTCACACTAGCCCTTCTTTCAGAATCAGAAGAAATTGGCAATTGGCAGAATATGGAATACATGTATATATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATCTGGAAGAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGCGTAGATATTTATTAGTAGTTGTTTGTAGTCATTTTCTAGTTTTCAGAGATAGAAATAAACTATAACAAATTGTAGGTTATTTTTTGGAATACAATTATTTATACTTGTTGAACCAACTTTCTTGTTTGAATTAATACAAAATATTTTCGCAATTCTGCAAATCTCAG

Coding sequence (CDS)

ATGAACAAGAGGAATACTTTAGGGGAATACTGGGGTTTCCAGCAAGAAAGTAAACAGGAGAATCGCATCGTGTCACCTGCTAAAGGAGAAGAGTTACATTCTGCAATAGCTCAAACTGAAGATGATCGTGATACAGAAAAGGAAAGTCAAGGATCGGATAACTTTGAATATCAATATGATGTGAAACTAAAAACTGGGATGCAGACCACTGATTTAGGCAATAATCACGAGAGGGAGAAGAAGAAAATCGGTGCGCATATCCTTAATTTAAGTGATGATGAGAGAGTGAAGAAGAGAATCAGAAGAGTGCCGTTGTCAGATTCTTGTCGCTTAGTCTCCACAATTAGCACTAGCCTGCTTTCTCTCTTTCTTCAAGCACAAGCAGTTCACACTAGCCCTTCTTTCAGAATCAGAAGAAATTGGCAATTGGCAGAATATGGAATACATGTATATATCAAATAG

Protein sequence

MNKRNTLGEYWGFQQESKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNHEREKKKIGAHILNLSDDERVKKRIRRVPLSDSCRLVSTISTSLLSLFLQAQAVHTSPSFRIRRNWQLAEYGIHVYIK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26995Spo26995gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26995.1Spo26995.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26995.1.CDS.5Spo26995.1.CDS.5CDS
Spo26995.1.CDS.4Spo26995.1.CDS.4CDS
Spo26995.1.CDS.3Spo26995.1.CDS.3CDS
Spo26995.1.CDS.2Spo26995.1.CDS.2CDS
Spo26995.1.CDS.1Spo26995.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26995.1.utr3p.2Spo26995.1.utr3p.2three_prime_UTR
Spo26995.1.utr3p.1Spo26995.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26995.1.exon.6Spo26995.1.exon.6exon
Spo26995.1.exon.5Spo26995.1.exon.5exon
Spo26995.1.exon.4Spo26995.1.exon.4exon
Spo26995.1.exon.3Spo26995.1.exon.3exon
Spo26995.1.exon.2Spo26995.1.exon.2exon
Spo26995.1.exon.1Spo26995.1.exon.1exon


Homology
[Close]
BLAST of Spo26995.1 vs. NCBI nr
Match: gi|902233884|gb|KNA23237.1| (hypothetical protein SOVF_025930, partial [Spinacia oleracea])

HSP 1 Score: 164.9 bits (416), Expect = 1.100e-37
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 17  SKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH 76
           SKQENRIVSPAKG ELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH
Sbjct: 1   SKQENRIVSPAKGGELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH 60

Query: 77  EREKKKIGAHILNLSDDERVKKRIRR 103
           EREKKKIGAHILNLSDDERVKKRIRR
Sbjct: 61  EREKKKIGAHILNLSDDERVKKRIRR 86
[Close]
BLAST of Spo26995.1 vs. NCBI nr
Match: gi|902185526|gb|KNA10512.1| (hypothetical protein SOVF_143830, partial [Spinacia oleracea])

HSP 1 Score: 136.0 bits (341), Expect = 5.700e-29
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = 1 

		  

Query: 16  ESKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNN 75
           ESKQEN  VSPAKGEELHSA AQTE+D DTEKE+QGS +FEYQ DVKLKTGMQTTDLG++
Sbjct: 157 ESKQENHTVSPAKGEELHSAAAQTENDPDTEKENQGSGHFEYQNDVKLKTGMQTTDLGDD 216

Query: 76  HEREKKKIGAHILNLSDDERVKKRIRR 103
           HEREKKKIG HI++LSD+ERVKK +RR
Sbjct: 217 HEREKKKIGVHIIDLSDNERVKKTMRR 243
[Close]
BLAST of Spo26995.1 vs. NCBI nr
Match: gi|902233968|gb|KNA23276.1| (hypothetical protein SOVF_026430 [Spinacia oleracea])

HSP 1 Score: 115.9 bits (289), Expect = 6.100e-23
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 

		  

Query: 14  QQESKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLG 73
           +QESKQENRIVSPAKGEELHS  AQTEDDRD +KE+QGSDNFEYQYDVKLKT MQTTDLG
Sbjct: 387 KQESKQENRIVSPAKGEELHSETAQTEDDRDIQKENQGSDNFEYQYDVKLKTWMQTTDLG 446

Query: 74  NNHE-REKKKIGAHIL 89
           NNHE R +K +   +L
Sbjct: 447 NNHEGRSRKSVXCRLL 462
[Close]
BLAST of Spo26995.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWL9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_025930 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.000e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 17  SKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH 76
           SKQENRIVSPAKG ELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH
Sbjct: 1   SKQENRIVSPAKGGELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNNH 60

Query: 77  EREKKKIGAHILNLSDDERVKKRIRR 103
           EREKKKIGAHILNLSDDERVKKRIRR
Sbjct: 61  EREKKKIGAHILNLSDDERVKKRIRR 86
[Close]
BLAST of Spo26995.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QT92_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_143830 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.000e-29
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = 1 

		  

Query: 16  ESKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLGNN 75
           ESKQEN  VSPAKGEELHSA AQTE+D DTEKE+QGS +FEYQ DVKLKTGMQTTDLG++
Sbjct: 157 ESKQENHTVSPAKGEELHSAAAQTENDPDTEKENQGSGHFEYQNDVKLKTGMQTTDLGDD 216

Query: 76  HEREKKKIGAHILNLSDDERVKKRIRR 103
           HEREKKKIG HI++LSD+ERVKK +RR
Sbjct: 217 HEREKKKIGVHIIDLSDNERVKKTMRR 243
[Close]
BLAST of Spo26995.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUR7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026430 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.200e-23
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 

		  

Query: 14  QQESKQENRIVSPAKGEELHSAIAQTEDDRDTEKESQGSDNFEYQYDVKLKTGMQTTDLG 73
           +QESKQENRIVSPAKGEELHS  AQTEDDRD +KE+QGSDNFEYQYDVKLKT MQTTDLG
Sbjct: 387 KQESKQENRIVSPAKGEELHSETAQTEDDRDIQKENQGSDNFEYQYDVKLKTWMQTTDLG 446

Query: 74  NNHE-REKKKIGAHIL 89
           NNHE R +K +   +L
Sbjct: 447 NNHEGRSRKSVXCRLL 462
The following BLAST results are available for this feature:
BLAST of Spo26995.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902233884|gb|KNA23237.1|1.1e-3798.8hypothetical protein SOVF_0259... [more]
gi|902185526|gb|KNA10512.1|5.7e-2980.4hypothetical protein SOVF_1438... [more]
gi|902233968|gb|KNA23276.1|6.1e-2378.9hypothetical protein SOVF_0264... [more]
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BLAST of Spo26995.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RWL9_SPIOL8.0e-3898.8Uncharacterized protein (Fragm... [more]
A0A0K9QT92_SPIOL4.0e-2980.4Uncharacterized protein (Fragm... [more]
A0A0K9RUR7_SPIOL4.2e-2378.9Uncharacterized protein OS=Spi... [more]
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BLAST of Spo26995.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26995.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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