Spo27000.1 (mRNA) | SpinachBase

Overview


Name	Spo27000.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00361 : 52092 .. 52481 (-)
Sequence length	390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTATTTGTGAAGAAGAAGAAGAAGAAGAAGCACAGTCAACACCAAAATGTGGCATGATGAAGGTGCAACTCGTTTCGAAATCAAAAAGTGAGAGGCTCTTAGAGAAGTATTTTGACGCGTTCGAGTTCGAGTTCGAGTTCGATTATGAGCAAAGCGGGATATGGTCGCCCCCAGTGAGACGTACCGCGTACGTTGGTTCGCCCGGGAGGATGTTTACGGAACAAGAAATGATGGATAGGCTTAAGTGTGTTTTGGAAGGTAGGAATGGTAGTTGTAGAAGAACCGGGTCTGCTTGTTTAGATGTTTGGGGTTGTATTTCTTCTTTGTTTTCTACTTTCCAGAAAAGGGTCAAGAAAAGAAGAGAAATTACACTTGGTATGTGA

mRNA sequence

ATGTCAATTATTTGTGAAGAAGAAGAAGAAGAAGAAGCACAGTCAACACCAAAATGTGGCATGATGAAGGTGCAACTCGTTTCGAAATCAAAAAGTGAGAGGCTCTTAGAGAAGTATTTTGACGCGTTCGAGTTCGAGTTCGAGTTCGATTATGAGCAAAGCGGGATATGGTCGCCCCCAGTGAGACGTACCGCGTACGTTGGTTCGCCCGGGAGGATGTTTACGGAACAAGAAATGATGGATAGGCTTAAGTGTGTTTTGGAAGGTAGGAATGGTAGTTGTAGAAGAACCGGGTCTGCTTGTTTAGATGTTTGGGGTTGTATTTCTTCTTTGTTTTCTACTTTCCAGAAAAGGGTCAAGAAAAGAAGAGAAATTACACTTGGTATGTGA

Coding sequence (CDS)

ATGTCAATTATTTGTGAAGAAGAAGAAGAAGAAGAAGCACAGTCAACACCAAAATGTGGCATGATGAAGGTGCAACTCGTTTCGAAATCAAAAAGTGAGAGGCTCTTAGAGAAGTATTTTGACGCGTTCGAGTTCGAGTTCGAGTTCGATTATGAGCAAAGCGGGATATGGTCGCCCCCAGTGAGACGTACCGCGTACGTTGGTTCGCCCGGGAGGATGTTTACGGAACAAGAAATGATGGATAGGCTTAAGTGTGTTTTGGAAGGTAGGAATGGTAGTTGTAGAAGAACCGGGTCTGCTTGTTTAGATGTTTGGGGTTGTATTTCTTCTTTGTTTTCTACTTTCCAGAAAAGGGTCAAGAAAAGAAGAGAAATTACACTTGGTATGTGA

Protein sequence

MSIICEEEEEEEAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVWGCISSLFSTFQKRVKKRREITLGM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27000	Spo27000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27000.1	Spo27000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27000.1.CDS.1	Spo27000.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27000.1.exon.1	Spo27000.1.exon.1	exon

Homology

[Close]

BLAST of Spo27000.1 vs. NCBI nr
Match: gi|870852535|gb|KMT04450.1| (hypothetical protein BVRB_8g181220 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 194.9 bits (494), Expect = 8.700e-47
Identity = 98/126 (77.78%), Postives = 109/126 (86.51%), Query Frame = 1


		  
Query: 4   ICEEEEEEEAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRR 63
           ICEE+ +    STP+CGM K+QLVSKSKSERLLEKYFDA  FEF+F+YE+SGIWSPPVRR
Sbjct: 3   ICEEDVQVST-STPQCGM-KIQLVSKSKSERLLEKYFDA--FEFDFNYEESGIWSPPVRR 62

Query: 64  TAYVGSPGRMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVWGCISSLFSTFQKRVKKRR 123
           T YVGSPGR FTE+EMM +L+ VLE RNGSC R  SACLDVWGCISSLFSTFQKRVK+RR
Sbjct: 63  TTYVGSPGRCFTEEEMMAKLRDVLEARNGSCTRRNSACLDVWGCISSLFSTFQKRVKRRR 122

Query: 124 EITLGM 130
           EIT GM
Sbjct: 123 EITFGM 124

[Close]

BLAST of Spo27000.1 vs. NCBI nr
Match: gi|731349918|ref|XP_010686243.1| (PREDICTED: uncharacterized protein LOC104900517 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 1


		  
Query: 4   ICEEEEEEEAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRR 63
           ICEE+ +    STP+CGM K+QLVSKSKSERLLEKYFDA  FEF+F+YE+SGIWSPPVRR
Sbjct: 3   ICEEDVQVST-STPQCGM-KIQLVSKSKSERLLEKYFDA--FEFDFNYEESGIWSPPVRR 62

Query: 64  TAYVGSPGRMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVWGCISSLFSTFQKRVKKRR 123
           T YVGSPGR FTE+EMM +L+ VLE RNGSC R  SACLDVWGCISSLFSTFQKRVK+RR
Sbjct: 63  TTYVGSPGRCFTEEEMMAKLRDVLEARNGSCTRRNSACLDVWGCISSLFSTFQKRVKRRR 122

Query: 124 EITLG 129
           EIT G
Sbjct: 123 EITFG 123

[Close]

BLAST of Spo27000.1 vs. NCBI nr
Match: gi|743911838|ref|XP_010999783.1| (PREDICTED: uncharacterized protein LOC105107528 [Populus euphratica])

HSP 1 Score: 102.8 bits (255), Expect = 4.500e-19
Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = 1


		  
Query: 12  EAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPG 71
           E+ S+PK    ++Q+VSK  S+RLL+K+FDA E+  +FDYEQSGIWSPP+RR+A++ SPG
Sbjct: 14  ESSSSPK----RIQIVSKFVSDRLLDKFFDATEY--DFDYEQSGIWSPPIRRSAFLSSPG 73

Query: 72  RMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVW 106
           R+FTE+EM+++L  V++ R    RR   AC +VW
Sbjct: 74  RIFTEEEMLEKLGNVMDARR--ARRHNKACCNVW 99

[Close]

BLAST of Spo27000.1 vs. NCBI nr
Match: gi|1000958783|ref|XP_015576682.1| (PREDICTED: uncharacterized protein LOC8275171 [Ricinus communis])

HSP 1 Score: 100.9 bits (250), Expect = 1.700e-18
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 1


		  
Query: 23  KVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMFTEQEMMDR 82
           K+QLVSKS S+RLL+K+FD  EF  +FDY+QSGIWSPP++R+AY+ SPG++FTE+EM+ +
Sbjct: 14  KIQLVSKSVSDRLLDKFFDVSEF--DFDYQQSGIWSPPIKRSAYLSSPGQIFTEEEMLKK 73

Query: 83  LKCVLEGRNGSCRRTGSACLDVWGCIS 110
           L+ +++ R G   R   A  +VW C++
Sbjct: 74  LRNIMDERRG---RRHKAFRNVWQCVA 95

[Close]

BLAST of Spo27000.1 vs. NCBI nr
Match: gi|1009106637|ref|XP_015875522.1| (PREDICTED: uncharacterized protein LOC107412288 [Ziziphus jujuba])

HSP 1 Score: 100.5 bits (249), Expect = 2.200e-18
Identity = 46/74 (62.16%), Postives = 63/74 (85.14%), Query Frame = 1


		  
Query: 22  MKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMFTEQEMMD 81
           +KVQLVSKS S++LLEK+FDA EF  +FDYEQSG+WSPPVRR+ ++ SPG++FTEQEM++
Sbjct: 51  LKVQLVSKSTSDQLLEKFFDAAEF--DFDYEQSGLWSPPVRRSVFMSSPGKIFTEQEMLE 110

Query: 82  RLKCVLEGRNGSCR 96
           RLK +++ R+   R
Sbjct: 111 RLKTMMDARDSGRR 122

[Close]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181220 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.100e-47
Identity = 98/126 (77.78%), Postives = 109/126 (86.51%), Query Frame = 1


		  
Query: 4   ICEEEEEEEAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRR 63
           ICEE+ +    STP+CGM K+QLVSKSKSERLLEKYFDA  FEF+F+YE+SGIWSPPVRR
Sbjct: 3   ICEEDVQVST-STPQCGM-KIQLVSKSKSERLLEKYFDA--FEFDFNYEESGIWSPPVRR 62

Query: 64  TAYVGSPGRMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVWGCISSLFSTFQKRVKKRR 123
           T YVGSPGR FTE+EMM +L+ VLE RNGSC R  SACLDVWGCISSLFSTFQKRVK+RR
Sbjct: 63  TTYVGSPGRCFTEEEMMAKLRDVLEARNGSCTRRNSACLDVWGCISSLFSTFQKRVKRRR 122

Query: 124 EITLGM 130
           EIT GM
Sbjct: 123 EITFGM 124

[Close]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Match: A0A061GEC9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029650 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-18
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1


		  
Query: 15 STPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMF 74
          S P+   +KVQLVSKS S+RLLEK+FD  ++   FDYE+SG+WSPPVRR+A++ SPGR+F
Sbjct: 12 SLPERSPVKVQLVSKSVSDRLLEKFFDVSQY--NFDYEKSGLWSPPVRRSAFLSSPGRIF 71

Query: 75 TEQEMMDRLKCVLEGR 91
          TEQEM++RLK V++ R
Sbjct: 72 TEQEMLERLKSVMDRR 85

[Close]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Match: B9H2F1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05950g PE=4 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-18
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1


		  
Query: 12  EAQSTPKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPG 71
           E+ S+PK    ++Q VSK  S+RLL+K+FDA EF  +FDYEQSGIWSPP+RR+A++ SPG
Sbjct: 14  ESSSSPK----RIQRVSKFVSDRLLDKFFDATEF--DFDYEQSGIWSPPIRRSAFLSSPG 73

Query: 72  RMFTEQEMMDRLKCVLEGRNGSCRRTGSACLDVWGC 108
           R+FTE+EM+++L  V++ R    RR   AC +V  C
Sbjct: 74  RIFTEEEMLEKLGNVMDARR--ARRHNKACCNVVCC 101

[Close]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Match: U5FVR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s06960g PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.900e-18
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 1


		  
Query: 17  PKCGMMKVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMFTE 76
           P     K+QLVSK  S+RLL+K+FDA EF  +FDYEQSG+WSPP+RR+A++ SPGR+FTE
Sbjct: 20  PSSSPKKIQLVSKFVSDRLLDKFFDASEF--DFDYEQSGLWSPPIRRSAFLSSPGRIFTE 79

Query: 77  QEMMDRLKCVLEGRNGSCRRTGSACLDVWGC 108
           +EM+ RL+ V++ R  +  +   AC +V  C
Sbjct: 80  EEMLGRLRKVMDARRDTRHK---ACWNVVWC 105

[Close]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Match: B9S8D0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.100e-16
Identity = 41/70 (58.57%), Postives = 60/70 (85.71%), Query Frame = 1


		  
Query: 23 KVQLVSKSKSERLLEKYFDAFEFEFEFDYEQSGIWSPPVRRTAYVGSPGRMFTEQEMMDR 82
          K+QLVSKS S+RLL+K+FD  EF  +FDY+QSGIWSPP++R+AY+ SPG++FTE+EM+ +
Sbjct: 14 KIQLVSKSVSDRLLDKFFDVSEF--DFDYQQSGIWSPPIKRSAYLSSPGQIFTEEEMLKK 73

Query: 83 LKCVLEGRNG 93
          L+ +++ R G
Sbjct: 74 LRNIMDERRG 81

The following BLAST results are available for this feature:

BLAST of Spo27000.1 vs. NCBI nr
BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
BLAST of Spo27000.1 vs. ExPASy Swiss-Prot
BLAST of Spo27000.1 vs. TAIR (Arabidopsis)

BLAST of Spo27000.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|870852535\|gb\|KMT04450.1\|	8.7e-47	77.7	hypothetical protein BVRB_8g18...	[more]
gi\|731349918\|ref\|XP_010686243.1\|	3.3e-46	77.6	PREDICTED: uncharacterized pro...	[more]
gi\|743911838\|ref\|XP_010999783.1\|	4.5e-19	53.1	PREDICTED: uncharacterized pro...	[more]
gi\|1000958783\|ref\|XP_015576682.1\|	1.7e-18	52.8	PREDICTED: uncharacterized pro...	[more]
gi\|1009106637\|ref\|XP_015875522.1\|	2.2e-18	62.1	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo27000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8BSE7_BETVU	6.1e-47	77.7	Uncharacterized protein OS=Bet...	[more]
A0A061GEC9_THECC	3.5e-18	61.8	Uncharacterized protein OS=The...	[more]
B9H2F1_POPTR	3.5e-18	53.1	Uncharacterized protein OS=Pop...	[more]
U5FVR3_POPTR	5.9e-18	52.7	Uncharacterized protein OS=Pop...	[more]
B9S8D0_RICCO	1.1e-16	58.5	Putative uncharacterized prote...	[more]

BLAST of Spo27000.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo27000.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 22..84 score: 3.2
None	No IPR available	PANTHER	PTHR34287:SF2	SUBFAMILY NOT NAMED	coord: 22..84 score: 3.2