Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAACATATAAGATAATATTCCACTTATATGTAAACATTGGAATCTTTCTCCATGTTCATTAGGGACATAATGAATATTCATTGAGATATTGTCACCCGGGTGTATAATCTAAATTGCATAACCTTTATATTTTAGGTGAAAGAACAGAGGCTGAAAAGTAGACCTGATCAACATGAGTCCGGACCGACCCGACCCGATTTTTTGTCGGGACTGGGCAGATGTTTAGGCCCGGCTCGAAAATTTAAAATTTTTGACGGATTTGGGAAACATAAAAGCTGCATTTTTTGTTATTTGATCCAGCCCGAAAATGGCTAGAAATGCCCGATATTTTAGGCCGGAAATAGTGGGTTTGGGCATATAAAATCCAGCCCGAATTTTTGCCCAGCCTAGCCCAGCCCGACATACGTGCTGATTTTAAAGCTTCAGCCCGACCTGAACTCGGCCTGACCCGTCTTTTGATCAGGTCTACTGAAAAGTAAATACTGGAGGACAAGACGATGCCGTATCAATGTGCTGAAGTTGCTAGATTTTCTTCCCATTTTTGTCTCATTGAAAGTCTGAGAGTGATGGAGCTGGAGCTTTTAAAGAGTATACTTGGCACTTTGCCCAGATCATAATTTTAAGGAGAGAGAAACACAAGTACTGTTAAATTATTCTGATATTTTTCTAGAAATTTACACAAATTTGAGTATACTTTTAAATTTATTTTTTGCAATTTCTGGGTATGCTCAAACTAAAATACAGAATACAATAATGCAATTGATTCAAATGTCGTTACCTTTTTCTCCAGTTCTTCATTGCTCCTCAAGGTAATTTACAAATCTCCCAAAAATGTTTATTTATGTGAATTTTAGTTTAAATTTTGTTCCATTTCTGCATTTTTAAGTTCTTAATTATTCCTTTTACTTGATTTTTTTCTGGGCTTATTATAACTATGTAATGAGTACAGTTTTAGCTCATTTAAAATCATACCCATCTCTAAATTGCTGCCCTTTTCTGGGAATTTCATAATTGTCTTAAATATTAGGGTTTTTGAATTGTACTACCATAGTTATGTTATGTACTAGTTGTTTGAAGCTCATTCTTAGAAAATGAGTGATTGGTGATCTTTCTTTTTGTTTGCCCCTTTAATGTAATAATAATACTAGCAGTGTTTCATAGAAGATTTGTTGTTTATGATTGTGTGGCAAATTCGATTTTTAAAGTTGATCACTGATGAAATTTTTGAGAAATACTGTAGTATATTTGGAGGGATTTGTTTACCCCTTAAATGTGATCATACTAGTAGTGTTACATAGAATTTTTTTTGTTTATGATTGTGTGGGGAATTCGATTTTTTGAAGTTGATCACTGATGAATTTTTTTGAGAAACACTAAGAGTGTATTTGGAGGGATTTGTTTGCCCCTTAACCCTTTAATGTGATAATACTAGTAGTGTTTCATAGAAGATTTGTTGTTTATGATTGTGTGGTGAATTCGATTATGTTGAAATTGTTCATTGATGAAATTATTGAGGATACCGTAGTGAATTTGAATTTGAAGGGATAATTCTTCATTGCTTAACATAGTGAAATCAAGTACTATTATTTTCCTTTGCTTTTTAGGGTGAAGTCTGAGAATTTAGTTGTAAGATGCCCCATTGAGCGCCCGTCTTCAGCAAATGGTATTGCTAAACATATATTCTCTGGGTTGGTAGCTTCTTGCCTAGTTTTCTCCCAAGCCAATTTGGTATGTATCTCATTTCCGTTTGGTTTTATTTGCAAAAATTGAATTAAATGCATAAACTGTAGCTTAGGATCATGGATTAAGTAAAATGATCTACATTAAGATTGATTTGTTTTTGGGTTTTTCTCTTGGTAAAATTATTTTTATTTTGGGGCTAACAGGTTTACGGGGCAGATCTTCCTCATCAAAGTAGCATAGGCCAGCTTGCCGATGTCTCCGGCAATACGGTTCCATTTCCTCTTGATGAAAGTTCTAGTGATGAAAAGGTGGCAATGATGATGATGAGAGGTATGACGGCTAAAAACTTCGATCCAGAAAGATACTCTGGTAGATGGTTCGAGGTGGCCTCTCTTAAAGGCGGATTTGCTGGGATTGGTCAAGAAGACTGTCATTGCACCCAGGTGACCATTATAATGATTGAGGACCTCAATCTGCTTTTCATAGGTGCCACTAATATTTGAAGTTGTTCTCTATCTTTGTTGTTCCCAAATGTTGGTACAAAGCAATTAGAAACATTTCCTCTGTATTTAGGGGTTGTTTGGTTGACATGTAAAAATAGGGGAAGTGAAAATTCATGGGAATTCATAGATTGGTAGTTGTTTGGTTGACATAAAATAAAAGGAAAAATGGAGGAAGTTGGAATTCCTACAAAACCTGGGAAGTAAATTACCTAGCCTCCCCTTTGGTCAATCAAAATTCATGGGAATTTCTAATTCCCCTGTTGTCAACCAAACAACTTAAGGAAATTCCCATGGGCTTAGGAAAGTAATTTCCCTTGAATTACAACTTCCTTTAGGAATTATATTCCCGTGTCAACCAAACAACTCCTTAATATCTGTTGTGCTAAGATGTTTCCTGATTCTAGGGTATATATACGTTTGATATGAAGACGCCCGCCATTCAAGTTGATACTTTCTGTGTACATGGTGGTCCTGATGGGTACATTACTGGTATTAGAGGAAGGGTTCAGTGTCTCTCGGAAAAGGATAAAGACCTGAAAGAAACTGATTTAGAGAGGCAAGAGATGATCAAAGAGAAGTGCTACCTGCGTTTTCCAACTTTGCCGTTTATTCCCAAGGAGCCTTATGATGTGATTGATACTGATTATGACAATTTTGCTCTTGTCTCAGGGGCCAAAGACAAAAGTTTTGTCCAGGTAAATCATAATAGTTTCTTATTTCACATAAAAAGTTTCTTATTTGAGCTTCTATGATTGCTGTATTTTCATTTATCCAGTAATGTGCGAAGGCAGAACGTGGAAATTTTCTTTCTTTAGCTGTCTAGTACGAGTATAACCAACCAAGTCTGCTTCTCCCTTGGTGTCAGAATACTTGCAACAGTTTGACCTACACACTTGCTTAGTTTGACCGTAAATATATGCAATTATACAATCATTATCATTATCATTACCCCATTGCCTCAAAGAGGCTCCTGCAAAAAGCGGGGTAAGGAGGGGTCGCACATACGTAACTATACAATAACATCTGATTTTTATATATTAGTGAGAAAAATATGGTCAAAGTTAATGTATGAAAAGCGCAAAAGTCAATATGTTGTTGCAAGTATTCTAGGACGGAGGGAGTACCGGAATAAAACGGAATATGGTCTAGGCTTGATTAGCATTGAGATTTGTGATCGACATCACACTGGTTTGCTTTGTTACTGTCTAGTTGATTTGGTTTGCTTTCTCTGTTGTTAGCATCATATATAGTTGGTTGATTATTCCAAAAACCATATTTGTTGACGAGCACTTTTATTTTGTGAAACTCGAAACTTCAGAAAACTTCTCCTTGATATAGGGATTGTATGAATTATGTAATTTAAAGCCTACACTTCTACTCTTCCTTTTGAGCAGTCGCCACTTCCTGAGTTCCTTCACTTTCATGTGAAGATGCGGGGTTTTTCCTGTCATTTAAACTCAAGATCCAATCCGTTGCATTACTATGAGTTGGATTTTTGATGAATATGCTCTGAATTTCACAGATATACTCAAGAACACCGAATCCTGGACCAGAATTCATCGAGAAGTACAAAACTTACCTAGCAGACTTCGGATATGACACAAACAAAATCAGAGATACACCCCAAGATTGCCAAGTAATGTCGATGAGTGAACTTTCTTCGATGATGTCTCAATCTGGAATGCAAAAGGCTCTAAACAACGAGTTTCCTGATCTCGGGTTGAAGTCTTCTGTAGCATTTGATCCCTTCACAAGTGTTTTTGACACATTTAAGAAGCTTGTTGAACTCTACTTCAAGAAGTAGTGAATCTCTCATGTGATAGTAGGCTTCTTGCATATGTATGTGAAATTTGTAAAAATCACACTAAAACTTTGTCATATCTGACATTCATATACATGGAAGTGTTTTATTGTTGTCATGCAAAATTGCAAACTGGTAGTATCTGTAAGAGGAAGTAATTCCAATGTCAGATATGTATTACAAAATACAGATAGTCAACAAAACGGAAAAATAGGGAAAAGACAAGCACTAAAGGACAAAACATAACAATCAAATGGCGTTTTTATGTGAAAAATGGCGTTTTCATTTCTTTGATATGTTTTTTGCTCGCACATCTTTGATATTGAGCCTTTGGTATAGTTATAGCCTTATAGAGTTCAAAATTAGTAATAGAG AGAACATATAAGATAATATTCCACTTATATGTAAACATTGGAATCTTTCTCCATGTTCATTAGGGACATAATGAATATTCATTGAGATATTGTCACCCGGGTGTATAATCTAAATTGCATAACCTTTATATTTTAGGTGAAAGAACAGAGGCTGAAAAGTAGACCTGATCAACATGAGTCCGGACCGACCCGACCCGATTTTTTGTCGGGACTGGGCAGATGTTTAGGCCCGGCTCGAAAATTTAAAATTTTTGACGGATTTGGGAAACATAAAAGCTGCATTTTTTGTTATTTGATCCAGCCCGAAAATGGCTAGAAATGCCCGATATTTTAGGCCGGAAATAGTGGGTTTGGGCATATAAAATCCAGCCCGAATTTTTGCCCAGCCTAGCCCAGCCCGACATACGTGCTGATTTTAAAGCTTCAGCCCGACCTGAACTCGGCCTGACCCGTCTTTTGATCAGGTCTACTGAAAAGTAAATACTGGAGGACAAGACGATGCCGTATCAATGTGCTGAAGTTGCTAGATTTTCTTCCCATTTTTGTCTCATTGAAAGTCTGAGAGTGATGGAGCTGGAGCTTTTAAAGAGTATACTTGGCACTTTGCCCAGATCATAATTTTAAGGAGAGAGAAACACAAGTACTGTTAAATTATTCTGATATTTTTCTAGAAATTTACACAAATTTGAGTATACTTTTAAATTTATTTTTTGCAATTTCTGGGTATGCTCAAACTAAAATACAGAATACAATAATGCAATTGATTCAAATGTCGTTACCTTTTTCTCCAGTTCTTCATTGCTCCTCAAGGGTGAAGTCTGAGAATTTAGTTGTAAGATGCCCCATTGAGCGCCCGTCTTCAGCAAATGGTATTGCTAAACATATATTCTCTGGGTTGGTAGCTTCTTGCCTAGTTTTCTCCCAAGCCAATTTGGTTTACGGGGCAGATCTTCCTCATCAAAGTAGCATAGGCCAGCTTGCCGATGTCTCCGGCAATACGGTTCCATTTCCTCTTGATGAAAGTTCTAGTGATGAAAAGGTGGCAATGATGATGATGAGAGGTATGACGGCTAAAAACTTCGATCCAGAAAGATACTCTGGTAGATGGTTCGAGGTGGCCTCTCTTAAAGGCGGATTTGCTGGGATTGGTCAAGAAGACTGTCATTGCACCCAGGGTATATATACGTTTGATATGAAGACGCCCGCCATTCAAGTTGATACTTTCTGTGTACATGGTGGTCCTGATGGGTACATTACTGGTATTAGAGGAAGGGTTCAGTGTCTCTCGGAAAAGGATAAAGACCTGAAAGAAACTGATTTAGAGAGGCAAGAGATGATCAAAGAGAAGTGCTACCTGCGTTTTCCAACTTTGCCGTTTATTCCCAAGGAGCCTTATGATGTGATTGATACTGATTATGACAATTTTGCTCTTGTCTCAGGGGCCAAAGACAAAAGTTTTGTCCAGATATACTCAAGAACACCGAATCCTGGACCAGAATTCATCGAGAAGTACAAAACTTACCTAGCAGACTTCGGATATGACACAAACAAAATCAGAGATACACCCCAAGATTGCCAAGTAATGTCGATGAGTGAACTTTCTTCGATGATGTCTCAATCTGGAATGCAAAAGGCTCTAAACAACGAGTTTCCTGATCTCGGGTTGAAGTCTTCTGTAGCATTTGATCCCTTCACAAGTGTTTTTGACACATTTAAGAAGCTTGTTGAACTCTACTTCAAGAAGTAGTGAATCTCTCATGTGATAGTAGGCTTCTTGCATATGTATGTGAAATTTGTAAAAATCACACTAAAACTTTGTCATATCTGACATTCATATACATGGAAGTGTTTTATTGTTGTCATGCAAAATTGCAAACTGGTAGTATCTGTAAGAGGAAGTAATTCCAATGTCAGATATGTATTACAAAATACAGATAGTCAACAAAACGGAAAAATAGGGAAAAGACAAGCACTAAAGGACAAAACATAACAATCAAATGGCGTTTTTATGTGAAAAATGGCGTTTTCATTTCTTTGATATGTTTTTTGCTCGCACATCTTTGATATTGAGCCTTTGGTATAGTTATAGCCTTATAGAGTTCAAAATTAGTAATAGAG ATGCAATTGATTCAAATGTCGTTACCTTTTTCTCCAGTTCTTCATTGCTCCTCAAGGGTGAAGTCTGAGAATTTAGTTGTAAGATGCCCCATTGAGCGCCCGTCTTCAGCAAATGGTATTGCTAAACATATATTCTCTGGGTTGGTAGCTTCTTGCCTAGTTTTCTCCCAAGCCAATTTGGTTTACGGGGCAGATCTTCCTCATCAAAGTAGCATAGGCCAGCTTGCCGATGTCTCCGGCAATACGGTTCCATTTCCTCTTGATGAAAGTTCTAGTGATGAAAAGGTGGCAATGATGATGATGAGAGGTATGACGGCTAAAAACTTCGATCCAGAAAGATACTCTGGTAGATGGTTCGAGGTGGCCTCTCTTAAAGGCGGATTTGCTGGGATTGGTCAAGAAGACTGTCATTGCACCCAGGGTATATATACGTTTGATATGAAGACGCCCGCCATTCAAGTTGATACTTTCTGTGTACATGGTGGTCCTGATGGGTACATTACTGGTATTAGAGGAAGGGTTCAGTGTCTCTCGGAAAAGGATAAAGACCTGAAAGAAACTGATTTAGAGAGGCAAGAGATGATCAAAGAGAAGTGCTACCTGCGTTTTCCAACTTTGCCGTTTATTCCCAAGGAGCCTTATGATGTGATTGATACTGATTATGACAATTTTGCTCTTGTCTCAGGGGCCAAAGACAAAAGTTTTGTCCAGATATACTCAAGAACACCGAATCCTGGACCAGAATTCATCGAGAAGTACAAAACTTACCTAGCAGACTTCGGATATGACACAAACAAAATCAGAGATACACCCCAAGATTGCCAAGTAATGTCGATGAGTGAACTTTCTTCGATGATGTCTCAATCTGGAATGCAAAAGGCTCTAAACAACGAGTTTCCTGATCTCGGGTTGAAGTCTTCTGTAGCATTTGATCCCTTCACAAGTGTTTTTGACACATTTAAGAAGCTTGTTGAACTCTACTTCAAGAAGTAG MQLIQMSLPFSPVLHCSSRVKSENLVVRCPIERPSSANGIAKHIFSGLVASCLVFSQANLVYGADLPHQSSIGQLADVSGNTVPFPLDESSSDEKVAMMMMRGMTAKNFDPERYSGRWFEVASLKGGFAGIGQEDCHCTQGIYTFDMKTPAIQVDTFCVHGGPDGYITGIRGRVQCLSEKDKDLKETDLERQEMIKEKCYLRFPTLPFIPKEPYDVIDTDYDNFALVSGAKDKSFVQIYSRTPNPGPEFIEKYKTYLADFGYDTNKIRDTPQDCQVMSMSELSSMMSQSGMQKALNNEFPDLGLKSSVAFDPFTSVFDTFKKLVELYFKK Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo27097.1 vs. NCBI nr
Match: gi|731327719|ref|XP_010674669.1| (PREDICTED: uncharacterized protein LOC104890777 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 552.7 bits (1423), Expect = 4.200e-154 Identity = 271/335 (80.90%), Postives = 299/335 (89.25%), Query Frame = 1
BLAST of Spo27097.1 vs. NCBI nr
Match: gi|902221212|gb|KNA18823.1| (hypothetical protein SOVF_067260 [Spinacia oleracea]) HSP 1 Score: 491.9 bits (1265), Expect = 8.800e-136 Identity = 238/241 (98.76%), Postives = 239/241 (99.17%), Query Frame = 1
BLAST of Spo27097.1 vs. NCBI nr
Match: gi|255563999|ref|XP_002522999.1| (PREDICTED: chloroplastic lipocalin isoform X1 [Ricinus communis]) HSP 1 Score: 464.5 bits (1194), Expect = 1.500e-127 Identity = 222/326 (68.10%), Postives = 263/326 (80.67%), Query Frame = 1
BLAST of Spo27097.1 vs. NCBI nr
Match: gi|590607205|ref|XP_007020937.1| (Chloroplastic lipocalin [Theobroma cacao]) HSP 1 Score: 463.0 bits (1190), Expect = 4.400e-127 Identity = 218/305 (71.48%), Postives = 253/305 (82.95%), Query Frame = 1
BLAST of Spo27097.1 vs. NCBI nr
Match: gi|731432794|ref|XP_010644414.1| (PREDICTED: uncharacterized protein LOC100250424 [Vitis vinifera]) HSP 1 Score: 462.2 bits (1188), Expect = 7.500e-127 Identity = 214/301 (71.10%), Postives = 254/301 (84.39%), Query Frame = 1
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNS8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g080700 PE=3 SV=1) HSP 1 Score: 552.7 bits (1423), Expect = 2.900e-154 Identity = 271/335 (80.90%), Postives = 299/335 (89.25%), Query Frame = 1
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH46_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_067260 PE=3 SV=1) HSP 1 Score: 491.9 bits (1265), Expect = 6.100e-136 Identity = 238/241 (98.76%), Postives = 239/241 (99.17%), Query Frame = 1
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Match: B9SAI0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0586980 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 1.000e-127 Identity = 222/326 (68.10%), Postives = 263/326 (80.67%), Query Frame = 1
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Match: A0A061F6X3_THECC (Chloroplastic lipocalin OS=Theobroma cacao GN=TCM_030970 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 3.000e-127 Identity = 218/305 (71.48%), Postives = 253/305 (82.95%), Query Frame = 1
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Match: F6H9B7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00320 PE=4 SV=1) HSP 1 Score: 462.2 bits (1188), Expect = 5.200e-127 Identity = 214/301 (71.10%), Postives = 254/301 (84.39%), Query Frame = 1
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Match: CHL_ARATH (Chloroplastic lipocalin OS=Arabidopsis thaliana GN=CHL PE=1 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 9.500e-114 Identity = 207/318 (65.09%), Postives = 240/318 (75.47%), Query Frame = 1
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Match: APOD_MOUSE (Apolipoprotein D OS=Mus musculus GN=Apod PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.000e-10 Identity = 49/172 (28.49%), Postives = 70/172 (40.70%), Query Frame = 1
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Match: APOD_HUMAN (Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 5.300e-8 Identity = 48/179 (26.82%), Postives = 73/179 (40.78%), Query Frame = 1
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Match: TIL_ARATH (Temperature-induced lipocalin-1 OS=Arabidopsis thaliana GN=TIL PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.500e-7 Identity = 52/180 (28.89%), Postives = 76/180 (42.22%), Query Frame = 1
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Match: APOD_RAT (Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.800e-6 Identity = 45/172 (26.16%), Postives = 67/172 (38.95%), Query Frame = 1
BLAST of Spo27097.1 vs. TAIR (Arabidopsis)
Match: AT3G47860.1 (chloroplastic lipocalin) HSP 1 Score: 411.4 bits (1056), Expect = 5.300e-115 Identity = 207/318 (65.09%), Postives = 240/318 (75.47%), Query Frame = 1
BLAST of Spo27097.1 vs. TAIR (Arabidopsis)
Match: AT5G58070.1 (temperature-induced lipocalin) HSP 1 Score: 57.4 bits (137), Expect = 2.000e-8 Identity = 52/180 (28.89%), Postives = 76/180 (42.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27097.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27097.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27097.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27097.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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