Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACCGAGTAACCAATCTCCGACGATTTATTCCCTCTCTCCTCCACCACCATCACCACCGCCATTTACACCAAAACACCAACCCGATCAAATCCCTCACCTCCGCAAACTCAACCATCCTCCAAAACCCCGCCTTACACCCCCGCTCATTCTCTTCTCTCTCCTCTGACCCTACGGCCTCCACCACCGCCGAAATCCGCAAATACATCGGATACTCCCTCCTCCTCCTCGGTTGCGGCGTTGGAACCTACTATTCCTTCCCTTTCCCGGAAAACGCCAAGCACAAAAAAGCCCAACTCTTCAAATACGCCCCTCTCCCCGAAGATCTTCATACCATCTCTAATTGGAGTGGTACCCATGAGGTCCATACCCGCAATTTCATTCAACCGGAATCGGTTTCGGACCTCGAAAAACTTGTCCAAGAAGCCCATCAAAAGTCCCAGAAGATTCGGCCTGTTGGGTCGGGTCTTTCTCCAAATGGGGTTGGGCTTTCTCGGGCTGGCATGGTGAATTTGGGCTTGTTGGATAAGGTATTGGAGGTTGATAAGGAGAAGAAGACTGTTAGAGTTGAAGCTGGTATTAGAGTTCAGCAGCTTGTTGATCAAATTAAGGAGTACGGACTTACTTTGCAAAATTTTGCTTCTATTAGGGAGCAGCAGATTGGTGGCATTCTTCAGGTCGATTGCATATTAATTAATTAGTTTTCAGCTTTATGGGTTCCATTTGATATTGCTGAATGTTGTTGGGTTTGAATGGTTTCAAATTTTGTTTGTTTTCCCTTTTGTGTGAGAATGTTAGAATGTTGATTGTAGAATGTAGGAGTTACTTTATGTGGGTATGGTGTGTAGATGAAGGTCATCGATGTTGGCGGGATTTTCCTAATTCCCCAATCACTTGTGAACCAATAAACGGAGATTTTAACATGAAAGTCGTACTTTTTGGGCTTAATTTAACAAATTAGATAGTGAATTGTGAACCTGTATCCACTGTCTGGGACTCAAACTAGCGAGTTAGGTAACACTAATCTTATGTGACATACATTTGTTCTTAGATGATGAAACTATGACTTAACTAGAAAGTTTAGCAGGAGAACTCTAGGATAAGTTTCAGCTTTCACTGGTTTTTGAATCTAGCTTTAGGTGTCTGGGAGAAAGAAGTCGAAGCTACAAATGCCGCTAAGAATATATTATTGGATAATGTGCTAGAAATCAGAGGATGTTTGGTTCTAATTGTTAACTACATGGAACTTTTTTTGTTTTTAGCATTGTTAAGATTTGTGTTTTCAAAAATGGAGATTACTTGTCCAATCATGATAGAATTTGATGAAACAAGAACTAAATTCTCAAGCTCAGTTATTTCAATGAATGTATGATTCTTTGCTGATTAAACTACCTTCACTCCTTCAGTTTTGATGTTCAAAGTGAATGCCCATATATATATATATATATATAGCTTACATTCCAATATTCCATGTATATGCTTTTTAATGATTGTTTTATATTTACTAGGCCACCTTTATATCAATCTACTTTTGCCAAAGGTGTGATAGTTGTCTTTTGACAAATGTTAAGGACCACAGTATGATCTAACTATGAAGGGAATACGAAAATACTTCTTTCTCAATACAGTTGTTTCTTTAGGAGGTTGTCCGTAGATGTATTTTCTGTCCTCTTGAAATGCAAGGCAAAGAAATGACCTCTTTCCCGGTTTGCATAGAGAAAAAAATCTGGTATATGAGAGGCGAGGAAAATCATAAGGATTTTTATAATTATATTTGGAAAGTTATGGTGTTCTAGGTTTGTTTCATCATACTGTGTCTTAGAAGAATACATAACAGAATAAGTACTGTAATATTGTATAAGCATTTTTCTCCTCCCTAGCTTTGTTTCTAACACCAAAATGCTTTTAGGTTGGTGCTCATGGCACTGGTGCAAGATTGCCACCTATTGATGAGCAAGTTATTTCCGTGAAACTGGTCACTCCTGCCAAGGGAACTATAGAGCTATCTAAAGAGAAAGATCCGGAGCTATTTTATCTTGCTCGTGTTGGTCTTGGAGGACTCGGAGTAGTGGCTGAAGTCACCCTTCAGTGTGTTGATAGGCAGGAGCTTGTAGAGCAC ATGCACCGAGTAACCAATCTCCGACGATTTATTCCCTCTCTCCTCCACCACCATCACCACCGCCATTTACACCAAAACACCAACCCGATCAAATCCCTCACCTCCGCAAACTCAACCATCCTCCAAAACCCCGCCTTACACCCCCGCTCATTCTCTTCTCTCTCCTCTGACCCTACGGCCTCCACCACCGCCGAAATCCGCAAATACATCGGATACTCCCTCCTCCTCCTCGGTTGCGGCGTTGGAACCTACTATTCCTTCCCTTTCCCGGAAAACGCCAAGCACAAAAAAGCCCAACTCTTCAAATACGCCCCTCTCCCCGAAGATCTTCATACCATCTCTAATTGGAGTGGTACCCATGAGGTCCATACCCGCAATTTCATTCAACCGGAATCGGTTTCGGACCTCGAAAAACTTGTCCAAGAAGCCCATCAAAAGTCCCAGAAGATTCGGCCTGTTGGGTCGGGTCTTTCTCCAAATGGGGTTGGGCTTTCTCGGGCTGGCATGGTGAATTTGGGCTTGTTGGATAAGGTATTGGAGGTTGATAAGGAGAAGAAGACTGTTAGAGTTGAAGCTGGTATTAGAGTTCAGCAGCTTGTTGATCAAATTAAGGAGTACGGACTTACTTTGCAAAATTTTGCTTCTATTAGGGAGCAGCAGATTGGTGGCATTCTTCAGGTTGGTGCTCATGGCACTGGTGCAAGATTGCCACCTATTGATGAGCAAGTTATTTCCGTGAAACTGGTCACTCCTGCCAAGGGAACTATAGAGCTATCTAAAGAGAAAGATCCGGAGCTATTTTATCTTGCTCGTGTTGGTCTTGGAGGACTCGGAGTAGTGGCTGAAGTCACCCTTCAGTGTGTTGATAGGCAGGAGCTTGTAGAGCAC ATGCACCGAGTAACCAATCTCCGACGATTTATTCCCTCTCTCCTCCACCACCATCACCACCGCCATTTACACCAAAACACCAACCCGATCAAATCCCTCACCTCCGCAAACTCAACCATCCTCCAAAACCCCGCCTTACACCCCCGCTCATTCTCTTCTCTCTCCTCTGACCCTACGGCCTCCACCACCGCCGAAATCCGCAAATACATCGGATACTCCCTCCTCCTCCTCGGTTGCGGCGTTGGAACCTACTATTCCTTCCCTTTCCCGGAAAACGCCAAGCACAAAAAAGCCCAACTCTTCAAATACGCCCCTCTCCCCGAAGATCTTCATACCATCTCTAATTGGAGTGGTACCCATGAGGTCCATACCCGCAATTTCATTCAACCGGAATCGGTTTCGGACCTCGAAAAACTTGTCCAAGAAGCCCATCAAAAGTCCCAGAAGATTCGGCCTGTTGGGTCGGGTCTTTCTCCAAATGGGGTTGGGCTTTCTCGGGCTGGCATGGTGAATTTGGGCTTGTTGGATAAGGTATTGGAGGTTGATAAGGAGAAGAAGACTGTTAGAGTTGAAGCTGGTATTAGAGTTCAGCAGCTTGTTGATCAAATTAAGGAGTACGGACTTACTTTGCAAAATTTTGCTTCTATTAGGGAGCAGCAGATTGGTGGCATTCTTCAGGTTGGTGCTCATGGCACTGGTGCAAGATTGCCACCTATTGATGAGCAAGTTATTTCCGTGAAACTGGTCACTCCTGCCAAGGGAACTATAGAGCTATCTAAAGAGAAAGATCCGGAGCTATTTTATCTTGCTCGTGTTGGTCTTGGAGGACTCGGAGTAGTGGCTGAAGTCACCCTTCAGTGTGTTGATAGGCAGGAGCTTGTAGAGCAC MHRVTNLRRFIPSLLHHHHHRHLHQNTNPIKSLTSANSTILQNPALHPRSFSSLSSDPTASTTAEIRKYIGYSLLLLGCGVGTYYSFPFPENAKHKKAQLFKYAPLPEDLHTISNWSGTHEVHTRNFIQPESVSDLEKLVQEAHQKSQKIRPVGSGLSPNGVGLSRAGMVNLGLLDKVLEVDKEKKTVRVEAGIRVQQLVDQIKEYGLTLQNFASIREQQIGGILQVGAHGTGARLPPIDEQVISVKLVTPAKGTIELSKEKDPELFYLARVGLGGLGVVAEVTLQCVDRQELVEH Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo27157.1 vs. NCBI nr
Match: gi|902150727|gb|KNA05447.1| (hypothetical protein SOVF_190280 [Spinacia oleracea]) HSP 1 Score: 582.4 bits (1500), Expect = 4.400e-163 Identity = 293/296 (98.99%), Postives = 296/296 (100.00%), Query Frame = 1
BLAST of Spo27157.1 vs. NCBI nr
Match: gi|731324445|ref|XP_010672973.1| (PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 474.6 bits (1220), Expect = 1.300e-130 Identity = 243/296 (82.09%), Postives = 259/296 (87.50%), Query Frame = 1
BLAST of Spo27157.1 vs. NCBI nr
Match: gi|559162935|gb|AHB11182.1| (L-galactono-1,4-lactone dehydrogenase [Camellia sinensis]) HSP 1 Score: 433.3 bits (1113), Expect = 3.300e-118 Identity = 221/303 (72.94%), Postives = 253/303 (83.50%), Query Frame = 1
BLAST of Spo27157.1 vs. NCBI nr
Match: gi|224589061|gb|ACN59217.1| (putative L-galactono-1,4-lactone dehydrogenase [Vitis vinifera]) HSP 1 Score: 432.2 bits (1110), Expect = 7.400e-118 Identity = 222/298 (74.50%), Postives = 254/298 (85.23%), Query Frame = 1
BLAST of Spo27157.1 vs. NCBI nr
Match: gi|359482204|ref|XP_002274214.2| (PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial [Vitis vinifera]) HSP 1 Score: 426.0 bits (1094), Expect = 5.300e-116 Identity = 220/298 (73.83%), Postives = 254/298 (85.23%), Query Frame = 1
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDV4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190280 PE=4 SV=1) HSP 1 Score: 582.4 bits (1500), Expect = 3.100e-163 Identity = 293/296 (98.99%), Postives = 296/296 (100.00%), Query Frame = 1
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CN19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062480 PE=4 SV=1) HSP 1 Score: 474.6 bits (1220), Expect = 9.100e-131 Identity = 243/296 (82.09%), Postives = 259/296 (87.50%), Query Frame = 1
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Match: V5Q782_CAMSI (L-galactono-1,4-lactone dehydrogenase OS=Camellia sinensis GN=GalLDH PE=2 SV=1) HSP 1 Score: 433.3 bits (1113), Expect = 2.300e-118 Identity = 221/303 (72.94%), Postives = 253/303 (83.50%), Query Frame = 1
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Match: C0LVB5_VITVI (Putative L-galactono-1,4-lactone dehydrogenase (Fragment) OS=Vitis vinifera PE=2 SV=1) HSP 1 Score: 432.2 bits (1110), Expect = 5.200e-118 Identity = 222/298 (74.50%), Postives = 254/298 (85.23%), Query Frame = 1
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Match: F6HLP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05710 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 3.700e-116 Identity = 220/298 (73.83%), Postives = 254/298 (85.23%), Query Frame = 1
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Match: GLDH_BRAOL (L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 5.700e-110 Identity = 202/283 (71.38%), Postives = 235/283 (83.04%), Query Frame = 1
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Match: GLDH_ARATH (L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 7.400e-110 Identity = 198/274 (72.26%), Postives = 230/274 (83.94%), Query Frame = 1
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Match: GLDH2_ORYSJ (L-galactono-1,4-lactone dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH2 PE=2 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 1.400e-100 Identity = 175/242 (72.31%), Postives = 209/242 (86.36%), Query Frame = 1
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Match: GLDH1_ORYSJ (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH1 PE=2 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 3.100e-100 Identity = 175/242 (72.31%), Postives = 208/242 (85.95%), Query Frame = 1
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Match: GGLO_MOUSE (L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3) HSP 1 Score: 131.3 bits (329), Expect = 1.700e-29 Identity = 65/181 (35.91%), Postives = 112/181 (61.88%), Query Frame = 1
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Match: AT3G47930.1 (L-galactono-1,4-lactone dehydrogenase) HSP 1 Score: 398.3 bits (1022), Expect = 4.200e-111 Identity = 198/274 (72.26%), Postives = 230/274 (83.94%), Query Frame = 1
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Match: AT1G32300.1 (D-arabinono-1,4-lactone oxidase family protein) HSP 1 Score: 65.5 bits (158), Expect = 6.400e-11 Identity = 47/169 (27.81%), Postives = 90/169 (53.25%), Query Frame = 1
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Match: AT5G56490.1 (D-arabinono-1,4-lactone oxidase family protein) HSP 1 Score: 65.1 bits (157), Expect = 8.400e-11 Identity = 49/169 (28.99%), Postives = 90/169 (53.25%), Query Frame = 1
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Match: AT2G46740.1 (D-arabinono-1,4-lactone oxidase family protein) HSP 1 Score: 55.5 bits (132), Expect = 6.700e-8 Identity = 34/127 (26.77%), Postives = 67/127 (52.76%), Query Frame = 1
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Match: AT2G46750.1 (D-arabinono-1,4-lactone oxidase family protein) HSP 1 Score: 55.1 bits (131), Expect = 8.700e-8 Identity = 45/176 (25.57%), Postives = 87/176 (49.43%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27157.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27157.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27157.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27157.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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