Spo27236.1 (mRNA) | SpinachBase

Overview


Name	Spo27236.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding region RNP-1 protein
Location	SpoScf_00998 : 132781 .. 135955 (+)
Sequence length	726

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTTTCAATGCTCAATATGTACTAGTATGTCTGTTGGTTCATTGCAAACTGTCTATTATAGGTTGGTAAAGATTTTAGTTTTCCATTTTTAGGCTTTTAGGTACCATTTGACTCTTCATTTCACCTCACCTCAAGTACCCGTCTCGGGTACTCGACACTTGAACATTATTATGACACATTTAAACACTCCATTTCAAGCCAACATTAAGCGAATTTTTTTATAAATATTTGTGTCCGACACTTAGACACATGATCGTGTCTGAGTACAGCACTACAGCCTGCTGTTCGTTCGCCAGACAATTGGATTACCATTTTTCCATCCACAATTCAGGCATTCATCACTTCAACTACTCATGCTGGTTCCCTTTCCCCTTTCTCTTCATTTCATGCTGTCAATTATCTTTTGTAGTAATCCTTTTGTCATATTTGAATTTCTGACTCTGGCTTAAGTTAACACACTAGTTTTAGTGAATGACTGCTCACTGCCAAAACACCAGCTTGTAATTGATAAGACTGCATTCAATCAATCAGTCCAGTCCGGTGACATGTGATAACATGTATGGCAGTTTCCTTTAATTGATAAGACTGCATTCAATCAAAGTTCCAATGTTTGGAACATTTCAGCTTTTGGATCAAGGGTGATGTTTAGCAGTCCTAAAAGAAGGATTCATGATATCAGTTGGAGCACTTATATTAAATAAAAAGCCTGTACGGCTTTCAATGTTTGAACTCCCAAGTGGTGGCTTGAACCAAATTTGATTTTCTTGTCCTAATCTCCTAAGGAGAGACACTGTTAGGAGTTCCTTCGTCCTTGTTTTGTGGAATGTTCTTATTGTCTGTAAGATATATCTAGATTGCCATTTTGTTCGATATTTGATATGTGTATGAAGTCATTCATATTATTTGGAGAATGTTCAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGGTTTGTTAAGATCAGTAGTAACAACTAATAAGATTGTTATCATTTTCTTTAACGGGATAAATGTTGTAGTTCTTTTACACTCCCCCTTTTCTTTCAAAAGAGAAGAGAATGAATTTGCTACAAATCCTTCAGAAACAGCCTTTCTAATGATCTAGATTATAGACCTTTTGCTTTGTTGTGGTATATATTTGTTACTTCCCAGAACCTGCTAAGTGCCAATTACTTGATCCATATTTGCTTTCAAAGTTCATTCTTGATCAGATTATCATTTGGCATGTTACCTTTGCTGTTACAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGGTAAATCTCAATGATGACTAAGGAATCTGACTTGAATTTTCTACAGTAAGTTAGCAGAGTAGTAGTAGACAGTAGTATGTAAATCTTAAGGTTTCGTGACTGAATCCGCTTCTTTCATAGAAAGAAACTCTTCAAGTTTATGGATTCAGGTAGTTTAACTGCGCAAGTGTATGAATCCTGCCTTTTAGACTGGTAGTTGCTTGTCCGAGCTGTCCTACAATTGCAGTTAGTTCATCTGTTAGCTCATCGTTGTATGGTTCTGTTTGCAAAAATTAATGAATGTTCAATGTGGTTCTTATTTATGACTTACGTTGACTGGATTTCAGAACAAGGAAACTATATTCCTGAGATAAATTATTTGTGTTCTGGAATTTGTATAGAAAATGTTTAGGAAACTTTTCTTTCATGCCACAAGTGTTCGTGAAACTGGCTTATATGATGTCTCTTTTTGTTTGTCGGTTAATTATGGTCTCACTACCGTCTCAGTATTCCATATCAGCCTTTATAAAATTAACTTTGCTTAGGCCTGGTTCTCTTTGCGTGATCTGAATTGTATGGTTTTGAATGTTTTTTATGAGCGTTTTTTGTTTTTTCTAGTCTGGTATGGTCAGATGGTCTGATTGACCTAATAAACAATAAGAATAAGGTATTATTTGGATGCTTTTCCTCACAGAGCTGTATAATGTTTGCTTCTCTCCCCATAGTCATACTACGAATGTTACATACCTTTTTCGGATACTCTTTTCATTTCATATTATTTGACCGCTTAACCACTTTTATTCAAAATTTTAATATTGGTTCCAAATTACCTATCCGATCATATCCATCACCAATCCAAACTAAGATCATGCTCACAATAATCTTTGGGTCAGCTCTTAACTATGTTACTAAACAAATCGGGTTATTTAAAAATAATGACATATTTAAATTAACTTGGTTAGGTAAGCAGTAAGCATAAAAGGTTTTCGAAACATTTATTAACTGATATGAACACTAAATTGGCATGACGTAACCTGTTTAGAAACTATGCGTGAAACCAATATTTCGTATTTGGGAAATGATAAATCCAAGGAAGAATTTCACATCTTCTAAGAAAATCAACTTCCCTTCGTATTTGATAAAAAGTGAGATTATAAAGGGGAATTAAGAAGCAAAAGGGACCCATAACCCAAAGAGAGAATTGAGAAGTAAGAGTATATTTTATTTCCTAATTTTGACTTATCTAAATTTATTTTAGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

mRNA sequence

ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

Coding sequence (CDS)

ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

Protein sequence

MVLVELCYDWKCSNQYRMKQIFQGILAMGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTSKRLSKCYGFYIVLEILLVLELGMSRAST

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27236	Spo27236	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27236.1	Spo27236.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27236.1.exon.1	Spo27236.1.exon.1	exon
Spo27236.1.exon.2	Spo27236.1.exon.2	exon
Spo27236.1.exon.3	Spo27236.1.exon.3	exon
Spo27236.1.exon.4	Spo27236.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27236.1.CDS.1	Spo27236.1.CDS.1	CDS
Spo27236.1.CDS.2	Spo27236.1.CDS.2	CDS
Spo27236.1.CDS.3	Spo27236.1.CDS.3	CDS
Spo27236.1.CDS.4	Spo27236.1.CDS.4	CDS

Homology

[Close]

BLAST of Spo27236.1 vs. NCBI nr
Match: gi|902196927|gb|KNA13266.1| (hypothetical protein SOVF_118400 [Spinacia oleracea])

HSP 1 Score: 386.0 bits (990), Expect = 5.000e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


		  
Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI
Sbjct: 1   MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW
Sbjct: 61  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST
Sbjct: 121 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRLSKCYG
Sbjct: 181 LGDGTSKRLSKCYG 194

[Close]

BLAST of Spo27236.1 vs. NCBI nr
Match: gi|731335902|ref|XP_010678970.1| (PREDICTED: uncharacterized protein LOC104894441 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 300.8 bits (769), Expect = 2.100e-78
Identity = 153/194 (78.87%), Postives = 168/194 (86.60%), Query Frame = 1


		  
Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGS+ EK EYA F  KVKRTVYLDN+SPQV D VIKTAF+QYGT   IHFIQN+IE +Y 
Sbjct: 1   MGSDTEK-EYAAFEAKVKRTVYLDNVSPQVNDTVIKTAFEQYGTVTKIHFIQNYIEQSYN 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKC LVELEN KQA+ ILEVLSSYPFMMSGMPRPVR R A PEMFDDRP KPG+KI++ W
Sbjct: 61  GKCVLVELENEKQAEGILEVLSSYPFMMSGMPRPVRARHAEPEMFDDRPSKPGKKIELVW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           + P DP FEVAQKLKNL K+H AEQ+FLQKKQLEEEEKLSKQQAEALKGHYQK+EM+DST
Sbjct: 121 LKPNDPDFEVAQKLKNLTKKHAAEQSFLQKKQLEEEEKLSKQQAEALKGHYQKFEMMDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRL+K YG
Sbjct: 181 LGDGTSKRLAKYYG 193

[Close]

BLAST of Spo27236.1 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.800e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1


		  
Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 66  QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 125

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 126 EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 185

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 186 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 245

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 246 RRLARHYNFNV 256

[Close]

BLAST of Spo27236.1 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.800e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1


		  
Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 6   QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 65

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 66  EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 125

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 126 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 185

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 186 RRLARHYNFNV 196

[Close]

BLAST of Spo27236.1 vs. NCBI nr
Match: gi|823242939|ref|XP_012454135.1| (PREDICTED: uncharacterized protein LOC105776164 [Gossypium raimondii])

HSP 1 Score: 238.4 bits (607), Expect = 1.300e-59
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 1


		  
Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT++V++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKEKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRIRWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196

[Close]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R166_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118400 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.500e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


		  
Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI
Sbjct: 1   MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW
Sbjct: 61  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST
Sbjct: 121 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRLSKCYG
Sbjct: 181 LGDGTSKRLSKCYG 194

[Close]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDP0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118610 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.500e-78
Identity = 153/194 (78.87%), Postives = 168/194 (86.60%), Query Frame = 1


		  
Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGS+ EK EYA F  KVKRTVYLDN+SPQV D VIKTAF+QYGT   IHFIQN+IE +Y 
Sbjct: 1   MGSDTEK-EYAAFEAKVKRTVYLDNVSPQVNDTVIKTAFEQYGTVTKIHFIQNYIEQSYN 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKC LVELEN KQA+ ILEVLSSYPFMMSGMPRPVR R A PEMFDDRP KPG+KI++ W
Sbjct: 61  GKCVLVELENEKQAEGILEVLSSYPFMMSGMPRPVRARHAEPEMFDDRPSKPGKKIELVW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           + P DP FEVAQKLKNL K+H AEQ+FLQKKQLEEEEKLSKQQAEALKGHYQK+EM+DST
Sbjct: 121 LKPNDPDFEVAQKLKNLTKKHAAEQSFLQKKQLEEEEKLSKQQAEALKGHYQKFEMMDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRL+K YG
Sbjct: 181 LGDGTSKRLAKYYG 193

[Close]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.200e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1


		  
Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 66  QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 125

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 126 EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 185

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 186 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 245

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 246 RRLARHYNFNV 256

[Close]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0B0ML97_GOSAR (Putative RNA-binding rbpD OS=Gossypium arboreum GN=F383_19124 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.900e-60
Identity = 114/192 (59.38%), Postives = 147/192 (76.56%), Query Frame = 1


		  
Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT+++++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESIVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKGKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRICWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196

[Close]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0D2UT21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.900e-60
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 1


		  
Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT++V++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKEKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRIRWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196

[Close]

BLAST of Spo27236.1 vs. TAIR (Arabidopsis)
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.900e-45
Identity = 87/188 (46.28%), Postives = 129/188 (68.62%), Query Frame = 1


		  
Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           E+  Y  F+E+V+RTVY+D L+P  T  VI +AF+Q+GT   + FI N++ P  +    L
Sbjct: 5   EEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELPMGVL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+EN +  ++++  +S  PFM++GMPRPVR   A P MF D+P KPGR ++  W+ P D
Sbjct: 65  VEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWIKPND 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P F+ A+++K L ++H AE +F+ KKQLEE EKLSKQQAE    H++K+EM+D  L DG 
Sbjct: 125 PDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGV 184

Query: 213 SKRLSKCY 221
           +++L+  Y
Sbjct: 185 AQKLAGRY 192

The following BLAST results are available for this feature:

BLAST of Spo27236.1 vs. NCBI nr
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
BLAST of Spo27236.1 vs. ExPASy Swiss-Prot
BLAST of Spo27236.1 vs. TAIR (Arabidopsis)

BLAST of Spo27236.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902196927\|gb\|KNA13266.1\|	5.0e-104	100.	hypothetical protein SOVF_1184...	[more]
gi\|731335902\|ref\|XP_010678970.1\|	2.1e-78	78.8	PREDICTED: uncharacterized pro...	[more]
gi\|296082652\|emb\|CBI21657.3\|	1.8e-61	61.2	unnamed protein product [Vitis...	[more]
gi\|225438281\|ref\|XP_002269083.1\|	1.8e-61	61.2	PREDICTED: uncharacterized pro...	[more]
gi\|823242939\|ref\|XP_012454135.1\|	1.3e-59	59.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R166_SPIOL	3.5e-104	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CDP0_BETVU	1.5e-78	78.8	Uncharacterized protein OS=Bet...	[more]
D7SWK8_VITVI	1.2e-61	61.2	Putative uncharacterized prote...	[more]
A0A0B0ML97_GOSAR	8.9e-60	59.3	Putative RNA-binding rbpD OS=G...	[more]
A0A0D2UT21_GOSRA	8.9e-60	59.9	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo27236.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo27236.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G05970.2	1.9e-45	46.2	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..113 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 46..150 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 38..156 score: 9.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 43..119 score: 5.64
None	No IPR available	unknown	Coil	Coil	coord: 177..197 scor
None	No IPR available	PANTHER	PTHR36309	FAMILY NOT NAMED	coord: 31..234 score: 8.6
None	No IPR available	PANTHER	PTHR36309:SF1	SUBFAMILY NOT NAMED	coord: 31..234 score: 8.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding