Spo27247.1 (mRNA) | SpinachBase

Overview


Name	Spo27247.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Defensin protein
Location	chr5 : 8779095 .. 8780373 (-)
Sequence length	252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTCAATGAGGTCAATTGCTCTGGTTTTTCTTGTGTGCCTACTTGTCTTGTCAACAGGTTCCTAATCCTATCCTTACTGTTTTTCAAATTTTTATTTTCGCATTTTTTTTATATGGCTCCATTTTATTTTGTTTTGGATGTACGATTTAAAGCAATAAATAGATAAAATTTGTTCCGTAAGAGGGACCAAGTAAAATGTTTTACTACATTCCGTCAAAAATAATCAAAACATCCACGGTTACATTGTCGGGGCAACCATCATGCTAAATGATGGTATGACCGTATTAGAGTTTGGTTTGCCATCCCCTAACGTTCCGTCCGTGACCATATTAATGTTACTTTTCTTTTTCGTTTTTGACACAGACCATATATAGAGTAGATAGTTAGATACAAGGTAACCAACTATATTTAGTATTTTTGTATGGGTGCTAATTAGTAAAATCTACGGAGTATATACTAAATACGCATTGTTGAATTAATTTCCTTAAATTAAAATAGTGTATGCTTAGATTTTAGACATATATCCATTTTAATTACGTACTAAACTGTGATCGCATGCATGAATGTTGCACGTGAGGTGATCATAGATGCCTAACTACGTACGTCTTCATCCCAAATAACTAGTACTATACACTACTTACGTGTTATGTTTTGATTTTAAAAAATGGCTACAAATAATTAAATATCAATAATTAACATGCATTTTCAATTTGATGATTTGGGTATCATAATAGAAACACAGTATTATGGATTTATGGTTAAGACTTGAGATCGATTAATCATGGTTGATAGTTAATTTGAATTGGTTAAATTTCTATAATTATTTCATTAATGTAAAGATCTGATCCACGAAACATCATATTGTGGTGTCCCAAATTGATAAAAAGCAGAGTAGCCTCCTCTGATCTTGTAAAGTAGACTATCTAACTAAATGGCTGACTAATTCAGGATCACAAATTAATGTTGTCTAATATTTTTTTTCCGGCCCCTAATTAAGTGCGTAGATTTGACACAAATTTTAGTGAAACATATAGTCTTGTTTAATTAATTTTAACAAATTTGTTGTGAATTGTGTCATTTACAGAAGAAATGGGTCCAAGAAAGGCAGAAGCTGGAATTTTTAGCTCGAGGAAATGCAAAACTCCAAGTAAAACGTTCAAGGGAATATGTACTAGGGACTCCAACTGTGACACTTCTTGTAGGTATGAGGGATATCCAGCTGGAGATTGCAAGGGTATTCGTAGAAGATGCTTGTGTTGTACACATACTTAA

mRNA sequence

ATGAAGATGTCAATGAGGTCAATTGCTCTGGTTTTTCTTGTGTGCCTACTTGTCTTGTCAACAGAAGAAATGGGTCCAAGAAAGGCAGAAGCTGGAATTTTTAGCTCGAGGAAATGCAAAACTCCAAGTAAAACGTTCAAGGGAATATGTACTAGGGACTCCAACTGTGACACTTCTTGTAGGTATGAGGGATATCCAGCTGGAGATTGCAAGGGTATTCGTAGAAGATGCTTGTGTTGTACACATACTTAA

Coding sequence (CDS)

ATGAAGATGTCAATGAGGTCAATTGCTCTGGTTTTTCTTGTGTGCCTACTTGTCTTGTCAACAGAAGAAATGGGTCCAAGAAAGGCAGAAGCTGGAATTTTTAGCTCGAGGAAATGCAAAACTCCAAGTAAAACGTTCAAGGGAATATGTACTAGGGACTCCAACTGTGACACTTCTTGTAGGTATGAGGGATATCCAGCTGGAGATTGCAAGGGTATTCGTAGAAGATGCTTGTGTTGTACACATACTTAA

Protein sequence

MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27247	Spo27247	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27247.1	Spo27247.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27247.1.CDS.2	Spo27247.1.CDS.2	CDS
Spo27247.1.CDS.1	Spo27247.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27247.1.exon.2	Spo27247.1.exon.2	exon
Spo27247.1.exon.1	Spo27247.1.exon.1	exon

Homology

[Close]

BLAST of Spo27247.1 vs. NCBI nr
Match: gi|902180335|gb|KNA09536.1| (hypothetical protein SOVF_152730 [Spinacia oleracea])

HSP 1 Score: 136.3 bits (342), Expect = 2.400e-29
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 24 MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT 83
          MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT
Sbjct: 1  MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT 60

[Close]

BLAST of Spo27247.1 vs. NCBI nr
Match: gi|902193419|gb|KNA12297.1| (hypothetical protein SOVF_127180 [Spinacia oleracea])

HSP 1 Score: 120.9 bits (302), Expect = 1.000e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

		  
Query: 24 MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTH 83
          MGPRKA+AG FSS+KCKTPSKTF+G C R++NCDTSCRYEGYPAGDCKGIRRRC+CCTH
Sbjct: 1  MGPRKADAGFFSSKKCKTPSKTFRGPCVRNANCDTSCRYEGYPAGDCKGIRRRCICCTH 59

[Close]

BLAST of Spo27247.1 vs. NCBI nr
Match: gi|26393023|sp|P81571.1|DEFD2_SPIOL (RecName: Full=Defensin D2; AltName: Full=Antimicrobial peptide D2; AltName: Full=So-D2)

HSP 1 Score: 109.4 bits (272), Expect = 3.100e-21
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

		  
Query: 32 GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLC 80
          GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRC+C
Sbjct: 1  GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCMC 48

[Close]

BLAST of Spo27247.1 vs. NCBI nr
Match: gi|870858983|gb|KMT10447.1| (hypothetical protein BVRB_5g115740 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 86.7 bits (213), Expect = 2.100e-14
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK+SM+  A +FLV LLVL+TE +GPR AEA     R C TPS+ F+G+C R  NC++ C
Sbjct: 1  MKLSMKPFAAIFLVLLLVLATE-IGPRVAEA-----RTCGTPSQRFRGLCVRKRNCESVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+P G C+G RRRC+C
Sbjct: 61 NSEGFPDGSCQGARRRCIC 73

[Close]

BLAST of Spo27247.1 vs. NCBI nr
Match: gi|26393028|sp|P81573.1|DEFD7_SPIOL (RecName: Full=Defensin D7; AltName: Full=Antimicrobial peptide D7; AltName: Full=So-D7)

HSP 1 Score: 85.5 bits (210), Expect = 4.800e-14
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1

		  
Query: 32 GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGD 70
          GIFSSRKCKTPSKTFKG CTRDSNCDTSCRYEGYPAGD
Sbjct: 1  GIFSSRKCKTPSKTFKGYCTRDSNCDTSCRYEGYPAGD 38

[Close]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_152730 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.600e-29
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 24 MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT 83
          MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT
Sbjct: 1  MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTHT 60

[Close]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYF8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127180 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.100e-25
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

		  
Query: 24 MGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLCCTH 83
          MGPRKA+AG FSS+KCKTPSKTF+G C R++NCDTSCRYEGYPAGDCKGIRRRC+CCTH
Sbjct: 1  MGPRKADAGFFSSKKCKTPSKTFRGPCVRNANCDTSCRYEGYPAGDCKGIRRRCICCTH 59

[Close]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CA30_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115740 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-14
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK+SM+  A +FLV LLVL+TE +GPR AEA     R C TPS+ F+G+C R  NC++ C
Sbjct: 1  MKLSMKPFAAIFLVLLLVLATE-IGPRVAEA-----RTCGTPSQRFRGLCVRKRNCESVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+P G C+G RRRC+C
Sbjct: 61 NSEGFPDGSCQGARRRCIC 73

[Close]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CE40_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115760 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.700e-14
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK  MR  A + +V LLVL+TE +GPR AEA     R C  PS +FKGICTR  NC++ C
Sbjct: 1  MKQPMRPFAAILVVFLLVLATE-IGPRVAEA-----RTCDAPSHSFKGICTRKRNCESVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+  GDCKG RRRC+C
Sbjct: 61 NSEGFADGDCKGFRRRCIC 73

[Close]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115750 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.800e-13
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK  MR  A + L  LLVL+TE +GPR AEA     R C TPS  F+GIC    NC+++C
Sbjct: 1  MKQPMRPFAAILLALLLVLATE-IGPRVAEA-----RTCVTPSHRFRGICVSKRNCESAC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+P G+CKG RRRC+C
Sbjct: 61 NSEGFPDGNCKGFRRRCIC 73

[Close]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Match: DEFD2_SPIOL (Defensin D2 (Fragment) OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.900e-23
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

		  
Query: 32 GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCLC 80
          GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRC+C
Sbjct: 1  GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIRRRCMC 48

[Close]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Match: DEFD7_SPIOL (Defensin D7 (Fragment) OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.000e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1

		  
Query: 32 GIFSSRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGD 70
          GIFSSRKCKTPSKTFKG CTRDSNCDTSCRYEGYPAGD
Sbjct: 1  GIFSSRKCKTPSKTFKGYCTRDSNCDTSCRYEGYPAGD 38

[Close]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.100e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          M+  MR  + + LV LLV +TE MGP+ AEA     R C++ S  FKG C  D+NC + C
Sbjct: 1  MERGMRLFSSLVLVLLLVTATE-MGPKVAEA-----RTCESQSHRFKGACLSDTNCASVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
          + EG+PAGDCKG RRRC C
Sbjct: 61 QTEGFPAGDCKGARRRCFC 73

[Close]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Match: DEF04_ARATH (Defensin-like protein 4 OS=Arabidopsis thaliana GN=PDF2.1 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 5.800e-12
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK SMR I+ V  + ++ ++T  MGP   EA     R C + S+ FKG C  D+NC+  C
Sbjct: 1  MKFSMRLISAVLFLVMIFVATG-MGPVTVEA-----RTCASQSQRFKGKCVSDTNCENVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+P GDC+G RRRC C
Sbjct: 61 HNEGFPGGDCRGFRRRCFC 73

[Close]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Match: DFSD2_HELAN (Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-11
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK SM+  A + LV + +L+ E  GP   EA     R C++ S  FKG C  D+NC   C
Sbjct: 1  MKSSMKMFAALLLVVMCLLANEMGGPLVVEA-----RTCESQSHKFKGTCLSDTNCANVC 60

Query: 61 RYEGYPAGDCKGIRRRCLCCTH 83
            E +  G C+G RRRC C TH
Sbjct: 61 HSERFSGGKCRGFRRRCFCTTH 77

[Close]

BLAST of Spo27247.1 vs. TAIR (Arabidopsis)
Match: AT2G02120.1 (Scorpion toxin-like knottin superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.300e-13
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK SMR I+ V  + ++ ++T  MGP   EA     R C + S+ FKG C  D+NC+  C
Sbjct: 1  MKFSMRLISAVLFLVMIFVATG-MGPVTVEA-----RTCASQSQRFKGKCVSDTNCENVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+P GDC+G RRRC C
Sbjct: 61 HNEGFPGGDCRGFRRRCFC 73

[Close]

BLAST of Spo27247.1 vs. TAIR (Arabidopsis)
Match: AT1G61070.1 (low-molecular-weight cysteine-rich 66)

HSP 1 Score: 55.1 bits (131), Expect = 2.400e-8
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK+S R  + + L+ +++ +   MG    EA     R C+T S  F G C   SNC   C
Sbjct: 1  MKVSPRLNSALLLLFMILATV--MGLVTVEA-----RTCETSSNLFNGPCLSSSNCANVC 60

Query: 61 RYEGYPAGDCKGIRRRCLC 80
            EG+  GDC+G RRRCLC
Sbjct: 61 HNEGFSDGDCRGFRRRCLC 72

[Close]

BLAST of Spo27247.1 vs. TAIR (Arabidopsis)
Match: AT2G02140.1 (low-molecular-weight cysteine-rich 72)

HSP 1 Score: 48.9 bits (115), Expect = 1.700e-6
Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 1

		  
Query: 1  MKMSMRSIALVFLVCLLVLSTEEMGPRKAEAGIFSSRKCKTPSKTFKGICTRDSNCDTSC 60
          MK+S+R I+ + +  +L+ +T  MGP +A       R C++PS  F+G+C    +C  +C
Sbjct: 1  MKLSLRLISALLMSVMLLFATG-MGPVEA-------RTCESPSNKFQGVCLNSQSCAKAC 60

Query: 61 RYEGYPAGDCKGIRRRC 78
            EG+  G C  +R  C
Sbjct: 61 PSEGFSGGRCSSLRCYC 69

The following BLAST results are available for this feature:

BLAST of Spo27247.1 vs. NCBI nr
BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
BLAST of Spo27247.1 vs. TAIR (Arabidopsis)

BLAST of Spo27247.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902180335\|gb\|KNA09536.1\|	2.4e-29	100.	hypothetical protein SOVF_1527...	[more]
gi\|902193419\|gb\|KNA12297.1\|	1.0e-24	84.7	hypothetical protein SOVF_1271...	[more]
gi\|26393023\|sp\|P81571.1\|DEFD2_SPIOL	3.1e-21	97.9	RecName: Full=Defensin D2; Alt...	[more]
gi\|870858983\|gb\|KMT10447.1\|	2.1e-14	54.4	hypothetical protein BVRB_5g11...	[more]
gi\|26393028\|sp\|P81573.1\|DEFD7_SPIOL	4.8e-14	97.3	RecName: Full=Defensin D7; Alt...	[more]

BLAST of Spo27247.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QSM3_SPIOL	1.6e-29	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QYF8_SPIOL	7.1e-25	84.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8CA30_BETVU	1.5e-14	54.4	Uncharacterized protein OS=Bet...	[more]
A0A0J8CE40_BETVU	5.7e-14	55.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8CEL9_BETVU	2.8e-13	53.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo27247.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
DEFD2_SPIOL	1.9e-23	97.9	Defensin D2 (Fragment) OS=Spin...	[more]
DEFD7_SPIOL	3.0e-16	97.3	Defensin D7 (Fragment) OS=Spin...	[more]
DEF_NELNU	8.1e-14	51.9	Defensin-like protein OS=Nelum...	[more]
DEF04_ARATH	5.8e-12	45.5	Defensin-like protein 4 OS=Ara...	[more]
DFSD2_HELAN	4.9e-11	42.6	Defensin SD2 OS=Helianthus ann...	[more]

BLAST of Spo27247.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G02120.1	3.3e-13	45.5	Scorpion toxin-like knottin su...	[more]
AT1G61070.1	2.4e-8	40.5	low-molecular-weight cysteine-...	[more]
AT2G02140.1	1.7e-6	33.7	low-molecular-weight cysteine-...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	GENE3D	3.30.30.10		coord: 37..82 score: 1.4
IPR003614	Knottin, scorpion toxin-like	unknown	SSF57095	Scorpion toxin-like	coord: 37..81 score: 3.88
IPR008176	Defensin, plant	PRINTS	PR00288	PUROTHIONIN	coord: 38..53 score: 5.5E-6coord: 68..82 score: 5.
IPR008176	Defensin, plant	PROSITE	PS00940	GAMMA_THIONIN	coord: 37..60 scor
None	No IPR available	PANTHER	PTHR33147	FAMILY NOT NAMED	coord: 1..79 score: 1.2
None	No IPR available	PFAM	PF00304	Gamma-thionin	coord: 37..80 score: 3.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region