Spo27290.1 (mRNA)

Overview
NameSpo27290.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 8546866 .. 8550289 (+)
Sequence length243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCGAATCAGGCTTTCCACAATTGTGTTGTTGGGGTTCAACTCAAATTTTGGTTGGCAGAAAACAGCCAAATGTTGTACACTCCAATGCGCGTAACCTGGTTTTTCAGCACAGTTCAGACATGAAACCCATGGAGCAAGTAGAATTCTTCGAGAGTGAAGGTTGCTTGCTTTCTCTTACCTCCAATTGTAGTCTTTGTACATGATTTCCTGTAAAAGAAATTTTGGGAAGAAGGTGGTAGTGTAGTTTGTTAGGGAACAGAGCTAAGAACAGCTGGTTTGTATTCAAAGAACTGGTGTTCTGCTTGTATACCCTTGTGAGTTGTGAAGATCCCACTATTATGAATGGAAAAGGAGTAAAATTAGAATCATTTTGAATGTCTACTTACAATGCTGTTTATCATAGCATATTTCTAAACCTGAGATGAAAGACCTACATCGCAGAGATCGCGAGCCTAGCTTGCTCGCGAGCTACAAGATCATCGCTTAAGTCGCTGAACCGGAGGTGATCAAACCCCAGTTTAGGCCCTCCCCTTCATAAACAATCTTACAACCGTACCTAAATCATAAGCGCGTGTTGGGTTGGGCCATAAACTCGGGTGGTCTGTACCAAGCCATATATAAAGATGGTTGTGGGCTGGGAGGTCTGATGTTCCATATCAAGCCCATTTTCTACGGGCTGGGTCAAAAATTTAAAAAATGTAGCTCGAGCACTTCCCAAGCCCACGTGTCGAGTCGGACTGTCGTGCTTAAGCTTAATTTCTCTAAATTGAACGTAATTTGTCGTGAACTCGTGGTGGTTGTAGTGTGTCGTATCTTGCCGTGCTTCTTCCAAAAAAACCAGTGGCCCAAGCTAGCCCATGCCCTATGACTCCGTGTTCATGTCTAGCCGTGCCTTTTCATGTTGGCTAGTTTTGTGCCTTGGCCCGGCCCGGTCCAGTGCCATCTTTAGCTACCCTACGAGACTGAACTTGGCGAGTGTTTAGGACCTCTTATGTTTGGATCAATGGGACAACATCCAAAGGAAAATTCCTTAATGGCACCCCCTTGACCTATAGAGCAATCAATTCTAGAGAACATGTCTTGTTCATGATTAAGTCATGTTGATTTTCACGTTTCTAATAGCATTAGTGAAGTATGCGTTCATATCATATAGCAATTACATATTTTTTTTAAAGTTATCGTATCGTGTTTATCTCTAATAATCCTCTTATAAAGTAATTGATTTCCAACTCTACAATGATGATTTGTTGAATATTATCCCACAATAGACGATTGAAAACGAAATGTGTGACTTTTTGAGTTTTTATTCTCTCTTTTTAAGTAGAAAAGGGCATGGATGGGTCGCCATGGATAATATATCATGAAGACTTTTCACTCAAAGGAAAGTGATTTTCACCTTACATGAGAATCCAAATAAACAAATAATTTTTAAAGATGGTAGTGGACCTGCCCATCTTTCGGGCCAAGCCCACTAGTAACGGGTTGAGTTGGAATTTTAAAAAATACGGCTCAGGCACGACCCTAGCCTGGTCGAGCCTTCGTGTGACTCCGGTCTAAGCCTAATTTTACTCAATTTGACTTGGTTTGTCTTGTCGTGCAGTGCTTTTTACAAAATAAAAGAAAAAAATAAAAATAAAAAATAAAAATATCGGCTCGAGCATGGCCCATGACCATGCTCCTGTCGAGCCGTGCTTTTTTTCGTGTTTGGGTTGGGCGGTGCTTTTTTCGTGTTGGGTCGTGTCATGTTTTTTTCGTGTTGGGTCGTGTGATACTTTTTTGGTGTTGGGTCGTGTCATAGTGCCATCTTTAACCATTATGCACTAGAATTGTAGATTTTTACACGTTCACTTTAGGTAATCCAAAATTGTTATAAAGCATAGATGGTCNCAAAAGGTCTTGTGCGCACAAGGTGTACAATAAATTTATTGTACACCAAGATAACTTTAACCCTTTTTTTTGTAACTTTAACCTAGTTTTGATTAACTTTTATATTAGTAAAAAAAAATTGATAGATAAATATTTTAAAGGTTTAAATGATTAATTTTATACATTATTAGTTAGTTTGAAGAAATAAGTTTTACTAAAATGAAAAAATTTATCACTGAAAAATAGATAACTTTTACATATATATGCTTAACTTTTAAGCATTTTTAGTTAACTTTTACTCCGGTGTACAATATTTATTGTACACCCATTGTAAATAAGAATTTGTGATGTCAACTAGCTTTGTTCCTAAAGTATTAGGTTAGTGATACACAAACCTCGTCTACACTATTATTGTCCTCCTCTGCGGCTCTAAGTCTCTAACTATTCATCATCTACTCATCCATGTGTTAACTCTTGGTTAATGGGATTAACTTGGCAAATTAAACAAAAGCAAGTAGGATTAAACAAAAGAAACAAAATCACGAGGAGATATTCTCGGCTTTTGCTTAATCTAGTCTACTTAACCTTAATCTAGCCTTAATTAAATTCAAACTTCGAAGAGAATAGTTTTTTGGTCAACGGAGAGAGAAATAAAAAGGGTACTCTATCTAAATAATGTATAACCTGGAGAATAATTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGACCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCCCCTACTCTATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAAGCGGGTCGAGTATTCCGGGACGGAGGGAGTAGTTATCAACTAGCTCACTTTTTATTGTATTTTATATAAACACAGATTTCTTACACCCTTAAAATTTATAGTATAATTATGTATGGATTTACAACTTGCATGAAAAGATGCTTTCTACAATTTTAATAAAACTAATAATAATCTCAATTACTATTATTCTTATTGAGATTATTATTATTAGTATTATTTAGGTGATCTAGGATTCTAGGATGCATTTAGCTAAAACTTTACAGGCTTTCAACTTTTGATTTAGTTTATGGAAGTTAGATTAAGTTAGGAAGCGAAAAGGAGAGATTAAAAGTGAGTGGTAAAGTGACCAAAAAGGTTTTCTTAGCTAGTTATATACATCAACTATGTGAACAATAGTAAAGAATTTGAATACGTTAGGAGCATCTTTCAATGGTGTAAAAAAGGACCTGGTTGTAAATTATTTAAAATTTTAAGCAGGTAGTTTACCATTGGCGTGGAAAGGTTTACTTATTGTTAGAACAAGTAACACGGCTAGTAGAATATATTCCGATTAA

mRNA sequence

ATGACAGTCGAATCAGGCTTTCCACAATTGTGTTGTTGGGGTTCAACTCAAATTTTGGTTGGCAGAAAACAGCCAAATGTTGTACACTCCAATGCGCGTAACCTGGTTTTTCAGCACAGTTCAGACATGAAACCCATGGAGCAAGTAGAATTCTTCGAGAGTGAAGGTAGTTTACCATTGGCGTGGAAAGGTTTACTTATTGTTAGAACAAGTAACACGGCTAGTAGAATATATTCCGATTAA

Coding sequence (CDS)

ATGACAGTCGAATCAGGCTTTCCACAATTGTGTTGTTGGGGTTCAACTCAAATTTTGGTTGGCAGAAAACAGCCAAATGTTGTACACTCCAATGCGCGTAACCTGGTTTTTCAGCACAGTTCAGACATGAAACCCATGGAGCAAGTAGAATTCTTCGAGAGTGAAGGTAGTTTACCATTGGCGTGGAAAGGTTTACTTATTGTTAGAACAAGTAACACGGCTAGTAGAATATATTCCGATTAA

Protein sequence

MTVESGFPQLCCWGSTQILVGRKQPNVVHSNARNLVFQHSSDMKPMEQVEFFESEGSLPLAWKGLLIVRTSNTASRIYSD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo27290Spo27290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo27290.1Spo27290.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27290.1.exon.1Spo27290.1.exon.1exon
Spo27290.1.exon.2Spo27290.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27290.1.CDS.1Spo27290.1.CDS.1CDS
Spo27290.1.CDS.2Spo27290.1.CDS.2CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo27290.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo27290.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo27290.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo27290.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top