Spo08331 (gene)

Overview
NameSpo08331
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L37a
Locationchr3 : 11502841 .. 11504904 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTATGAGGATATCTACGATGCTAAGACTGCCCTTAATCATCTGACTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTCTTATTATTAGCCTGTTAAGATGAACACGAAGATTGATTTTAAGAAGGAGGATATTACCAAATTGCAGGAGAAATATGGTGTTTCTACTAAAGATAAGTGATGTGTTTTTGGGGGATTTAAGTTTGTGTAGAGGATTATGTAAAATGTGGCTGGTTTAATTTTTAAGGTTTTTTATTTTCCGATAATCGACATTGTTACTACTTAATATTTTAGTGTTAAATTGTTGATTACATTATGAAATTTGAGTTCTTATTAATCTTGAATTGAATTTTTGTGAAGTACAACAATACAAGCAGAAACGGAGGCGATGATTTGAAAGCAACCATGGAGGACCCTGCAATTCCAATTCACCCTCCCTCGAAATTCAAAGTAATTATCTCTTATTTTTTATATTCTGGGTTTTAATTGTTTATCAAAATTCAGAACTTTGTTTATTTATTCCATTATTATGGGTGTGTAGATTGAGAAAGTGTTCTAGGGTTTATGCTCAGACAATGTTTTTTAAGTTGAAATAAGCCCTTGATTGAACTGAACTGAATAGTGAACTAATTATGCTGCTAGCCGGAATTTTATTAAAAATGGGAGCATACTCAATTTAAATTGAGTAAACAGAATTCCATACTCGATCTCATAGTGAACTAATTGTACTTTCAGTTGGGTAATTAGCACTGGAAAAGGTAAGTAGTATTGAACTAATTGTATACATAAGAACAATATTGGAGTATTAAGATGGTTAAAAAAGGCGCCATATAAAAAAGCTGGCATTCTTTCAGGAGTAGAAATAAAATGAGCTTAAGATGAGATTGATGATATAAAACCAAAACAAAAAAAAGCAAAGTCTATCCACATTAAAGTTTAAAATGAGCTTAAGATGAGATTGATGATATAAAACCAAAACAAAAAAAAAGCAAAGTCTATCCACATTAAAGTTTAAACAAGAAGTAGAGAACCAATGGGTTGTCCAGTAATATTACGGAGTTGTAATTTTTGCTTTGTTGTTTTTGTTATTGATGTCATTTGTTTGTTGTATATTTTTGGGTGAGCTGAGTTTAGTTAATAATGCTCATTAAAGTTATGTAGATTTTTTTGATCGCTACTTTTGACTTTGTATGTTATTGATGCATACATGCCAAGAGAACCAAGAAGGTCAATATTGTTGGGAAATACGGTGAGTTCTGTTGCGATAATGTCAAAGGATGTCACATAGCATAAATCAATGCCATTTGTTTTGAAATCATGTATGTGACAATAGTGAGAAAAACAAGATATCATCCGGTATCTTTATATAATAGAGATTTGATACATTTTTGTCTAGAATAGCTTCATACTAAAGTGGTGTAAGATAATGAGAAGTTAATTTGAGACTTTTCTGTTTAAATGTTTCTGTTTGATTATTATTAGGAGCGAGTTATCTTCTCTAGGGTCTTAATTTGGTTGTTTGTCTCGCTGAGTGGATGAAATGTATTATCACAATTAATGAATATCATTATATTGTTTAGATACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAAGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGGTAAAGTTCCATTCTCAATCAATAAGATATCTATGGTCTGTGAATCGACTTAACTTTTGATGTCTGACTGCAAAAACACTATGATGCATTGCAGTACGCCGTGAAGAGAAAGGCTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGTTGGTGGTGCTTACACTTTGAAGTATATAGGCAGAAATTTATGCTAATCATACATAATTTCATTGTCTTTTTTATGTTTGAACAACACCGCCAGTGCAGTACCCTTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGATTGAGAGTTACTTATTTGCGTTTGTTATGCTATTTCTCTTCACTTTACTGTTTAATTGGGTATTTTTTTTGGCATGAATGTTTTGTTGTAGGGTTAA

mRNA sequence

ATGGTGTATGAGGATATCTACGATGCTAAGACTGCCCTTAATCATCTGACTGGGTTCAATGTCGCAAATCGCAACCATGGAGGACCCTGCAATTCCAATTCACCCTCCCTCGAAATTCAAAATACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAAGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGAAAGGCTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGGTTAA

Coding sequence (CDS)

ATGGTGTATGAGGATATCTACGATGCTAAGACTGCCCTTAATCATCTGACTGGGTTCAATGTCGCAAATCGCAACCATGGAGGACCCTGCAATTCCAATTCACCCTCCCTCGAAATTCAAAATACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAAGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGAAAGGCTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGGTTAA

Protein sequence

MVYEDIYDAKTALNHLTGFNVANRNHGGPCNSNSPSLEIQNTRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVKG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08331.1Spo08331.1mRNA


Homology
[Close]
BLAST of Spo08331.1 vs. NCBI nr
Match: gi|902181782|gb|KNA09799.1| (hypothetical protein SOVF_150270, partial [Spinacia oleracea])

HSP 1 Score: 110.2 bits (274), Expect = 2.000e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVKG 92
          TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRK VGIWGCKDCGKVKG
Sbjct: 1  TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKG 50
[Close]
BLAST of Spo08331.1 vs. NCBI nr
Match: gi|703074224|ref|XP_010089763.1| (60S ribosomal protein L37a [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 6.000e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 1 

		  

Query: 6   IYDAKTALNHLTGFNVANRNHGGPCNSNSPSLEIQNTRSGATLCKKIKKMEVSQHNKYFC 65
           +Y  K     LTGF +  R         +  +    TR GA+L K+IKKMEVSQH+K+FC
Sbjct: 33  VYFNKFFFTMLTGFKITKRT------KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFC 92

Query: 66  EFCGKYAVKRKAVGIWGCKDCGKVK 91
           EFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 93  EFCGKYAVKRKAVGIWGCKDCGKVK 111
[Close]
BLAST of Spo08331.1 vs. NCBI nr
Match: gi|976910465|gb|KVH97157.1| (Ribosomal protein L37ae, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 97.8 bits (242), Expect = 1.000e-17
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1 

		  

Query: 40  QNTRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
           ++TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 113 KSTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 163
[Close]
BLAST of Spo08331.1 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42  TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
           TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 58  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 106
[Close]
BLAST of Spo08331.1 vs. NCBI nr
Match: gi|604343407|gb|EYU42327.1| (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 15 TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63
[Close]
BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR65_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_150270 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.400e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVKG 92
          TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRK VGIWGCKDCGKVKG
Sbjct: 1  TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKG 50
[Close]
BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Match: W9R584_9ROSA (60S ribosomal protein L37a OS=Morus notabilis GN=L484_008013 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 1 

		  

Query: 6   IYDAKTALNHLTGFNVANRNHGGPCNSNSPSLEIQNTRSGATLCKKIKKMEVSQHNKYFC 65
           +Y  K     LTGF +  R         +  +    TR GA+L K+IKKMEVSQH+K+FC
Sbjct: 33  VYFNKFFFTMLTGFKITKRT------KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFC 92

Query: 66  EFCGKYAVKRKAVGIWGCKDCGKVK 91
           EFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 93  EFCGKYAVKRKAVGIWGCKDCGKVK 111
[Close]
BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Match: A0A103XUH6_CYNCS (Ribosomal protein L37ae (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_000748 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.100e-18
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1 

		  

Query: 40  QNTRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
           ++TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 113 KSTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 163
[Close]
BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Match: K4CND0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.300e-18
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Match: M5WNW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.300e-18
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42  TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
           TR GA+L K+IKKMEVSQH+KYFCEFCGKYAVKRKAVGIWGCKDCGKVK
Sbjct: 52  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 100
[Close]
BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-19
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQHNKYFCEFCGKY+VKRK VGIWGCKDCGKVK
Sbjct: 16 TRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.400e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQH+KYFCEFCGK+AVKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.400e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQH+KYFCEFCGK+AVKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.100e-19
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA++ K+IKKMEVSQH+KYFCEFCGKY VKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Match: RL37A_BRARR (60S ribosomal protein L37a OS=Brassica rapa subsp. rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 4.100e-19
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA++ K+IKKMEVSQH+KYFCEFCGKY VKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. TAIR (Arabidopsis)
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 96.7 bits (239), Expect = 8.000e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA+L K+IKKMEVSQHNKYFCEFCGKY+VKRK VGIWGCKDCGKVK
Sbjct: 16 TRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVK 64
[Close]
BLAST of Spo08331.1 vs. TAIR (Arabidopsis)
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.300e-20
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 

		  

Query: 42 TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 91
          TR GA++ K+IKKMEVSQH+KYFCEFCGKY VKRKAVGIWGCKDCGKVK
Sbjct: 16 TRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVK 64
The following BLAST results are available for this feature:
BLAST of Spo08331.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902181782|gb|KNA09799.1|2.0e-2198.0hypothetical protein SOVF_1502... [more]
gi|703074224|ref|XP_010089763.1|6.0e-1858.860S ribosomal protein L37a [Mo... [more]
gi|976910465|gb|KVH97157.1|1.0e-1786.2Ribosomal protein L37ae, parti... [more]
gi|641866750|gb|KDO85434.1|1.3e-1789.8hypothetical protein CISIN_1g0... [more]
gi|604343407|gb|EYU42327.1|1.3e-1789.8hypothetical protein MIMGU_mgv... [more]
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BLAST of Spo08331.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QR65_SPIOL1.4e-2198.0Uncharacterized protein (Fragm... [more]
W9R584_9ROSA4.2e-1858.860S ribosomal protein L37a OS=... [more]
A0A103XUH6_CYNCS7.1e-1886.2Ribosomal protein L37ae (Fragm... [more]
K4CND0_SOLLC9.3e-1889.8Uncharacterized protein OS=Sol... [more]
M5WNW1_PRUPE9.3e-1889.8Uncharacterized protein OS=Pru... [more]
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BLAST of Spo08331.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R37A1_ARATH1.4e-1987.7Putative 60S ribosomal protein... [more]
RL371_ORYSJ2.4e-1987.760S ribosomal protein L37a-1 O... [more]
RL372_ORYSJ2.4e-1987.760S ribosomal protein L37a-2 O... [more]
R37A2_ARATH4.1e-1985.760S ribosomal protein L37a-2 O... [more]
RL37A_BRARR4.1e-1985.760S ribosomal protein L37a OS=... [more]
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BLAST of Spo08331.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G10950.18.0e-2187.7Zinc-binding ribosomal protein... [more]
AT3G60245.12.3e-2085.7Zinc-binding ribosomal protein... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002674Ribosomal protein L37aePFAMPF01780Ribosomal_L37aecoord: 42..89
score: 6.4
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 42..89
score: 1.4
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 42..89
score: 9.77

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo111490.95Barchart | Table
Spo112340.85Barchart | Table
Spo149900.76Barchart | Table
Spo085460.67Barchart | Table