Spo07320.1 (mRNA) | SpinachBase

Overview


Name	Spo07320.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	NEFA-interacting nuclear protein NIP30, putative
Location	SpoScf_00525 : 100947 .. 105673 (+)
Sequence length	228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGATGAAGCCCCTCCAATTAGGTTGATGAATTTCGTGTCCCAAGCAGAGGTCGAATTTCAAACCCTAGTTTTTTTGTTTGTTTGTTTGATTGATTGATTAATTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGGCAATTAATTTGTGTTTGGATTGAAGTTATGGATGTGGTTGTGATTGGCATTTGACAGTTAGATGTAGCAAAGAGTAGTCCGGGTGAAAGGCTGGAAGATGGGACTGCTCAAAGAGACCATCCTCTTTTCGAGGTTTTGCATATTCGTCTTTTATGACTTATTATTGTATGTTCCAGTTGTTGCTGCTTTGCTTTCAGTTGATTTTTTTTTTGAAAATGCTTAATTTTTTGTTACGATGTTGAAGTCAGTACAACACCAGTGATTTTTTTTTTAATCTTTGTCAACTGTATAAATTTTATTCAGGGAGTTTTTTTACGCTTCTGTTGTCTATCATTTGTGCCATTCATTTGTTCATGTTCTCTTAGAATTTAACTATCTGAATCACAAATTATGGCAGTTTTATATGTCTTCTTGCTTGAATTATAAGGAATTAGATATATAAATGCAGAAATTTGCATGTCCAGCACAATGCTTATTAAATCTGTTTAGCTAATGATGACTAACTGTTCTGTGTGACATTCTACTTAATCTAAATTTATCTAGTTTTTTTTTTTTTTTTTGCTAAGCAAGAGAGAATAATATTAATTGAATCAACAATTACAACTTAAGCCAACTCCAAGCCATACAAACCAACTAGGTTGGACTCTATGCCTTTGGAATCAGCAAAAACAAAACTAAAACAAGCTCTAAAAACACAACCAGAATGCCTAAAAGGCTATTACAAATTTGTGAACCAGTCACTATCTCTCTTGCTTACATGTTTTGGCAAAACTACCTGAATTCTGCTCTTAACCATTTGCTTCAAAGCCTTCATACTCTGACTGACAGTGGGAATGGTACTATCCCAAAAGCTAGTGTTTCTACATTTCCAGATCAGATAGACAGCAGCACCAACAGCTGCAAAATAAACATGCTTCCTGAACCTTGAAGCTCTACTTTGTCCAGCTTTCCTGAGTAACTGAACCAAATTGCCATGAATTCTTTATCTAGTTGACTTGTATTTCCTTGTACTCTTTTTACATTCATAATAGCTTACAATAATATTACAGAAACCTTTAAGTCAAAGGACTTCTGAGATTTTATCTAAATCTCATGTCTTCTATTCTGATTTCTGACGGTGTGCATCCTGTGAACATTATGTGAAAGGAACACTGCTTTGTTTTCATTAAGAGTTTGTCTTTGTCTTTTCTGATTATGTCAAAACTTGAACATCCATCCATGTATACTACTGTAGATTTTATTCAGTGCCTTTTCCGTTCTTTTTAGACACCAAGGACGGAAGCTTATCTCCATAACAATATATATTGTCCATTACAGTTGATTCAGTGATTTATGTTTTACATAGACAATCTTTCTGCTGGCTGATTGATTTTCATAGTTTCTGTTAACGTGTTCTTGTTCTTTGTATAATACATTTATATACGGAGATGAAATATCTGAAGGTTTTAATCAAGAATTTTGTTTAATAGTTTGTTTCTTCTTTTCCTTGTTTGGAGGTTTTTATTTTTTCTTTAGGTCTTCTAAGTATAGTAAGGTGGGTGTGTATCTTTAACTCACCAACTAAGTGTTATGTAAGATTAGTAGTAATCTTCCTGTATAGAAGTATATAGGTTATGATTCACTAGTAAATGAAAGAATCAGGGTTTCGATTTTACCTTTTTTTTAATTGTTTTCTTTGGAACTGGTATGCCTTTAAAGTTGCTTTGAATTTGGAATACATTCATACGAAATAGCAAGATTAATGCCTGAGTTTGGATGTGAGCTCAATTGTTGTGATTTTTTCTGCAAAATTAATACTATGTACTGTGAATCTTATGAGCTGATGTCGGTTAATGGTGGTTGCATTTTAGTGTTCCTTATGTTTCTTAGATCATAGTCAAATATGTGCAACATATGTTTAGGGATTGGAATTGACAACTTCTAATTGTCAGAGTGAATAAATTTAAACTTTATTGCCTTAGGTCGTTTAACAGTGTATAGTACCAATAAGGTGTTCCTATGATATATGATACTCTGATTGACTTGTGCCTCAAACTTAAGTTATTGGATGCTGCTGCATAAAAAACTACTTCTGTTAAGAGGGCATTGTACGGGGGAGTTTGAAAAGAAGTAAGTTTGTAAGTCTGTCCTGAATAACGTTTAGTAAGTGTGTAATGCGCCTGAATGGGCATACGGCATACCCTGGCTGTGATATGTGTAAAGTGGGATAGAGATGGTTTCATTTATACTGGGTAAGTATTCAAAAGTTTAAGATTGTTCTTGACCGATCAAACTTTGTTTAAGGTTGTTATTTAGGGTTTTTGATGCCAGAAAGTATATGAATTTATTTAGGATGATTATAGGGTGACTGGTGCTTTGGCTTCCACTTCTTCTTTGACTCTATTGTTTTTGTTAACAGCTTGTTGTGTGATTGTATGATTGACATGAAGACTAAGAGCTTTCAGTTAATTATTTTAGAATATTTGTTAGACTGTAATGAATTGAACAATGTTTAAACTATTATAACAAGAGTTATATGCCTTCGCCACCTACACGAGACTACGAGATATGAAATAGAAAATCAAAACTACTTCTTTTTCTATTTTGTGATACGATATTAGGTAGGCGATTCTGTGATTTGAAATCTCTATTGTTGGTTGTTTTGTTCTGTTGGAGACATGACTCATCAACTTAGCTCCTGGCTGACTTGGGGGGTTGGATGTTTGGACCCTGTAGTTGGGTGTAGGTAGGCTGTTGTTGTTGTCCTGCCTGTGGTTTATTCATGTCAAAGTTTGGTTATGATTCTTAATTTTCTTGTTGGCTCTTAGCTATATCTTGTGCTGCGTACACCCAGACGTGCTGAATATGTCGTCCTGAACTTTATGCCACTTGTCAACATTCTTTTATGTAGAAGATCTCTTCTTCTGGCCAGACATAGTACCAAGTCTATTGGGGGCTCTTAACATGCCTCCCTTTAGAAACTGTAAGGGATATCCTATTCCTGATAAGATTTAATGAGACTCCTGCTTTCAATTGATAAATTTTCAATTGATTAACTTTCTCCTAAATTTTTGAGTACTTGTTTGATTTACAAAATTAGTCTTTCAATTGATAAATTTTCTCCTAAATTTTGGAATACTTTTTTGATTTACACAGCTGCTTGTTGATTTTTACTTGGGTAATGATAAAGTCTATGGTGCTGATTCTGCAGAAGCCTAAAACATAGTCAGATGACCTGGCTATGCACAGCTGGTGGATATATAAAGAGGGGAGCAGTTGTTGTTTTCAGATTTTTCAAGGGTTTCTTTCTGGATATGTAGCTTAGTTTATCAGTATGTAATTGTATGACCTTTCTTTTTTGTTGTGTCTTATCTTATGTTTTCCTTTACCACTTGGTACCAAAGATTGGTGAATATGAATATACTGTTTTTGCACCTCCTTTTTTGTTGGGGGGTTATGGTGTGTTGTCGTCCCACGCAGCCTTTACAGTTTCGTCGTTGTAGGTATCAAAATTGTCATGTTGTTTGCTCAATTTCTTGCCTGGTATGATACTATGATGTAGTATTCAATAATGGAAGTTTAACATTATTGGTTGAAGGTGAATGGGTATCTTGTTCTGTTGGCACTACTACAAATCCCGCCTTTTGAAGACACTTTTTAGACCGTTTTACGACGCCTTTAAGCGTCGAGAATTTATCCCTCGACGCTTTAAAGAAGCGTCGAGGAAATTAAAGTCGAGAATTTTCTCGAGGCCTTTCGTCGTCGAGAAAGGCGACGCTTTTTGCAGACCCCATTTTTCTATGTCGTCGAGAACCTCGACGCTTTTTTGCGTCTAGACTTTTGATATAGGCGTCGACAAACCTTATTCCCGCTATGCCCACCTTTTAACTATTTAATTTTTCGACGCCTAAAATCGTCGAGAAATTTGGGTTGTCTACGTTTATAAGCGTCTAAAAAAATGTGTTGTCGTGAATTTTAATCTAAATGTGTTTTATAACACGACTCCAAAAAGCGTTTTGTATAAGCTTTTTTTCTCCATGTATTCATGTATCGCATACAAGCTCTTTTTATTCCACGTACCTATTCATGTATCACATATATATATAATATATATATATAATATATATATACATAATAAAACATTAATGTACCGCGTAAAGCATATCATTTAAAGAAGTGTAGTTAAAGACACTCAAATAAAACATTATTTGGGAGTGATCAAAATAGAAAATAATTGACCGAGTACAAAAGGCTGACAAATGGGAATTTAGCTAAGGTATACACCTTTTACTAGTTTAAGCATTCAAGGAAAATTCAAGGACTTTATCCAAAGCTGTAAAAGCAGCAACACCAACACGAGTGGTTCTTCTGGAGCTTAACAAGGCCCTGGCATAATCCAGTACCAATGCATTCAGCACAGCATAACATCACTGCAGCACTCTTTACAGATGACCCCATTTGATGTGACATAGTTGTTATTAGTATAGATGTCAGCTTGGCTTCCATGGCTTGAGCCACTATGGCCTTGTCCACCATTAGAGTTTAAAGAACCCCTTGTACTATAA

mRNA sequence

ATGGCTGAGGATGAAGCCCCTCCAATTAGGTTGATGAATTTCGTGTCCCAAGCAGAGGTCGAATTTCAAACCCTATTAGATGTAGCAAAGAGTAGTCCGGGTGAAAGGCTGGAAGATGGGACTGCTCAAAGAGACCATCCTCTTTTCGAGATGTCAGCTTGGCTTCCATGGCTTGAGCCACTATGGCCTTGTCCACCATTAGAGTTTAAAGAACCCCTTGTACTATAA

Coding sequence (CDS)

ATGGCTGAGGATGAAGCCCCTCCAATTAGGTTGATGAATTTCGTGTCCCAAGCAGAGGTCGAATTTCAAACCCTATTAGATGTAGCAAAGAGTAGTCCGGGTGAAAGGCTGGAAGATGGGACTGCTCAAAGAGACCATCCTCTTTTCGAGATGTCAGCTTGGCTTCCATGGCTTGAGCCACTATGGCCTTGTCCACCATTAGAGTTTAAAGAACCCCTTGTACTATAA

Protein sequence

MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEMSAWLPWLEPLWPCPPLEFKEPLVL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo07320	Spo07320	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo07320.1	Spo07320.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07320.1.exon.1	Spo07320.1.exon.1	exon
Spo07320.1.exon.2	Spo07320.1.exon.2	exon
Spo07320.1.exon.3	Spo07320.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07320.1.CDS.1	Spo07320.1.CDS.1	CDS
Spo07320.1.CDS.2	Spo07320.1.CDS.2	CDS
Spo07320.1.CDS.3	Spo07320.1.CDS.3	CDS

Homology

[Close]

BLAST of Spo07320.1 vs. NCBI nr
Match: gi|902210082|gb|KNA16339.1| (hypothetical protein SOVF_089810 [Spinacia oleracea])

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-14
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAEDEAPPIRLMNFVSQAE      LDVAKSSPGERLEDGTAQRDHPLFE+
Sbjct: 1  MAEDEAPPIRLMNFVSQAE------LDVAKSSPGERLEDGTAQRDHPLFEL 45

[Close]

BLAST of Spo07320.1 vs. NCBI nr
Match: gi|902193231|gb|KNA12236.1| (hypothetical protein SOVF_127740 isoform B [Spinacia oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-9
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED AP IRLMNFVSQ E      LDVAKSS GER+EDGTAQRD PLFE+
Sbjct: 1  MAEDAAPQIRLMNFVSQEE------LDVAKSSRGERVEDGTAQRDRPLFEI 45

[Close]

BLAST of Spo07320.1 vs. NCBI nr
Match: gi|902193230|gb|KNA12235.1| (hypothetical protein SOVF_127740 isoform A [Spinacia oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-9
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED AP IRLMNFVSQ E      LDVAKSS GER+EDGTAQRD PLFE+
Sbjct: 1  MAEDAAPQIRLMNFVSQEE------LDVAKSSRGERVEDGTAQRDRPLFEI 45

[Close]

BLAST of Spo07320.1 vs. NCBI nr
Match: gi|731341639|ref|XP_010681995.1| (PREDICTED: protein FAM192A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.6 bits (161), Expect = 2.100e-8
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED  PPIRLMNFVSQ E+E      VAK S GERLEDGTAQRD PL+++
Sbjct: 1  MAEDVPPPIRLMNFVSQEELE------VAKRSHGERLEDGTAQRDRPLYDI 45

[Close]

BLAST of Spo07320.1 vs. NCBI nr
Match: gi|567904244|ref|XP_006444610.1| (hypothetical protein CICLE_v10022224mg [Citrus clementina])

HSP 1 Score: 58.5 bits (140), Expect = 5.700e-6
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAE+ + PIRLMNF+S+ +      LD AK + GER++DGTAQRD PLFE+
Sbjct: 1  MAEESSRPIRLMNFISEEQ------LDEAKRTRGERVDDGTAQRDRPLFEI 45

[Close]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_089810 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.300e-14
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAEDEAPPIRLMNFVSQAE      LDVAKSSPGERLEDGTAQRDHPLFE+
Sbjct: 1  MAEDEAPPIRLMNFVSQAE------LDVAKSSPGERLEDGTAQRDHPLFEL 45

[Close]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYA7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127740 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-9
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED AP IRLMNFVSQ E      LDVAKSS GER+EDGTAQRD PLFE+
Sbjct: 1  MAEDAAPQIRLMNFVSQEE------LDVAKSSRGERVEDGTAQRDRPLFEI 45

[Close]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0C9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127740 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-9
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED AP IRLMNFVSQ E      LDVAKSS GER+EDGTAQRD PLFE+
Sbjct: 1  MAEDAAPQIRLMNFVSQEE------LDVAKSSRGERVEDGTAQRDRPLFEI 45

[Close]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C370_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145020 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-8
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAED  PPIRLMNFVSQ E+E      VAK S GERLEDGTAQRD PL+++
Sbjct: 1  MAEDVPPPIRLMNFVSQEELE------VAKRSHGERLEDGTAQRDRPLYDI 45

[Close]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Match: A0A067H781_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028180mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.900e-6
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1


		  
Query: 1  MAEDEAPPIRLMNFVSQAEVEFQTLLDVAKSSPGERLEDGTAQRDHPLFEM 52
          MAE+ + PIRLMNF+S+ +      LD AK + GER++DGTAQRD PLFE+
Sbjct: 1  MAEESSRPIRLMNFISEEQ------LDEAKRTRGERVDDGTAQRDRPLFEI 45

The following BLAST results are available for this feature:

BLAST of Spo07320.1 vs. NCBI nr
BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
BLAST of Spo07320.1 vs. ExPASy Swiss-Prot
BLAST of Spo07320.1 vs. TAIR (Arabidopsis)

BLAST of Spo07320.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902210082\|gb\|KNA16339.1\|	3.3e-14	86.2	hypothetical protein SOVF_0898...	[more]
gi\|902193231\|gb\|KNA12236.1\|	1.4e-9	74.5	hypothetical protein SOVF_1277...	[more]
gi\|902193230\|gb\|KNA12235.1\|	1.4e-9	74.5	hypothetical protein SOVF_1277...	[more]
gi\|731341639\|ref\|XP_010681995.1\|	2.1e-8	68.6	PREDICTED: protein FAM192A [Be...	[more]
gi\|567904244\|ref\|XP_006444610.1\|	5.7e-6	56.8	hypothetical protein CICLE_v10...	[more]

BLAST of Spo07320.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RBF3_SPIOL	2.3e-14	86.2	Uncharacterized protein OS=Spi...	[more]
A0A0K9QYA7_SPIOL	1.0e-9	74.5	Uncharacterized protein OS=Spi...	[more]
A0A0K9R0C9_SPIOL	1.0e-9	74.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8C370_BETVU	1.4e-8	68.6	Uncharacterized protein OS=Bet...	[more]
A0A067H781_CITSI	3.9e-6	56.8	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo07320.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo07320.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description