Spo11742 (gene) | SpinachBase

Overview


Name	Spo11742
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	tRNA/rRNA methyltransferase SpoU family protein
Location	chr3 : 25811642 .. 25824196 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAACACAAGGAACTGAGGGAATAAGCTCTAAAACCTCCGTTCTCTCTCTTCGGTTCTTTGTCTATTCGCCGCCACCTAACTACCCGCCATTAACGGAGTGTGACTGACCCACCATCGCTGGTCACTCAGTCACTTACCCATTCGGCTCCACAAAGCTATGAGCCACGGCGCACGGGGAGGAAACAAGCAGATCGAATCGAGTCGCCGTCATCTCCCGTCTTCGAAGAAGCAGTTCGGAGAAGAAGCAAAAACCCAAGCAAATTAGCCCAGATACCAAAAACCCTTTGCTTTACAATCAAACTAACTTTCCCCCCGACTCAAAAAAATGACCGAAAGTGGTTCCACTTCCGCTGTGGCTGTGGCGGTGGAAAGCTATGTAATGGTGCACAACATTGCTAAACGCCACAACGTCGGCACATTGGCCCGGAGCGCCACCGCTTTCGGCGTATCGGAGTTAATACTGGTTGGCCGCCGTGACTTTAACTCCTTCGGCAACCATGGCTCCGTCTCTCACCTCCGCTTTCGCCATTTCCACTCTCTAGTCGAGGCGCGTAACTACCTCAAGGTAAAACCTCTCTTCTTATAGCATTCAATTTTTATTTTCTTAGTGGATTTCTTCATGTGTATTTGATTTTTCAGGAGAGAAATTGTGATATTTGTGGTGTGGAGATTACGAATGATGCTGTACCCGTTAATCAACATCCCTTTACCAGGAGTACTGCATTTTTACTCGGGAATGAGGTTGGTGTCTTCACTAACTTTGTTTGTTTGTTTTTTTTTCAATTGATTCAAGTAAATGAGCTGTGTTCGCGTTTGGTCTCTAGCCTCTTACGTGTTTGTTCACACAAATGGATCGAATCAGGTTGTATTTCGGTTTATTTTTGTGTTCATATAATTAATCTGAAGATTTTAACTCTAAATAGTTCTAAGTATTGGTAGAAAAAAGATAGTAGCTATGAAATCTAACCTTTGAGAAAAGAGAGAGGTGGTGAATATCACATCTAATGTATTCAACAAATATTTTAAAACCATGGAATATATCGACCACTCACATTTTCTAGAACACGCCATCAAAATGTTGTCGCCGAAAGGAAAAAAAGTTATCTTTCTTAATATGGCCTGATCCATGTTTAAATTAAGGAGTTATGTGCGGAAGCAGTTGCTTGTGACTGTTCCCCTACTTAAAGTTTGAGAATATAGACATCTTAGGAAACTTGGAGTTTTTGATAAAAGCCCGGTGGATGAGGATCACATTTTCGATTATTTGGATTCATTGGTTACACACATTTCCTAAGGAAGTAAAGTCCAAATTTGATAGAAGAGAAAAACTATTTTGCATCAAAGATGATGAAACTTCAAAAGGGTCACAAGTCAATCCAAGTACCAACAAGACAATAATTAGCAGAGATGTAATGGGATTGGAGTATTGAAGAGGGAGAATCTTGTAACTTTCTTATTTTAAGGAAAAAATTTTAGTTAACCATGTGTCGAAGACTCCTTTGGTCACACATCAACACCTTCATTGAATTTGAAAAGGATAAACTCATTAAAGAAGTATATAATTCAACCTTCGTCAAATCCAAAAAGGACTAAACTCACTAAAGAAGTATACTTCCTCCGTTCCTTCAATATTGCACCATGTTGACTTTACGCTTCCCAACACATGACTTTGACTCTTAATCTCTCTAATTATGTATAAGTAAAAGTTATAAAAAATTGATAATTAGAAAGTATATATCGATACGAATTTAAAAGATTTTACATGATTACATATTTGCTTATGCATATATTACAAAAGATGGTCAAAACTCAAAAGCACAACATGAAGTGTAAAAGTCAAAATTGTGCGATATTTGTGGAACAGAGGAAGAATACTTCTTTTTGATCTTTATAAAATGACAGAAAGGTTAGAAGATAATTCTTCTTTATTCTATTTTTGAACTCTGATGAGGAAAAGAAAGACAAAGAATAAGCTCAATAAATGAGCTGGAATTTATGCCATCTATAACACTTCCAAAAGGAAAAAAGGCAATAAGAGTCAAGTGCGTGTTCAAAATCAAGAGGGATGGTAACGATGCTTTAGAGAGCTACAAAACAAGGCTTGTTGCCAAGATTACAAGCAAAATCAAGGCATTTATTAGGAAGAGGTTTTTTCTCTGGTTAATCGATTAAAGACAGTAAGGTTGCCAATTTCAATGGAAGAAATCAATTTGCTTTTCTTAATTGATATCTAAAGGAAGAGGTGTACATTGAGCAATCAGAGGATTTTAGCAGACTTGAATATAAAGTACTTAGATTAAAGAAGGCATTGCATGAGTTAAAGCAAGCACCAAGAACGTGGAATGGTCATCTAGATAAACACCTACAAGACAATGGATTTTCAATGTGCATTCATGAGTATGTCCTTTATGTGAAGAAGCGGCACAATAATATCTTCTATGTTTGCATCTATGTGGTGGATGATCTAATATTCAAAGAAAGTAATGGTAAAATTGTTTGAAGATTTCAAGAAAAGAATGGCACGTGAATTTGAAATGACGGATATGGGACTCATGTCCTATAATCATTGGAGTTCTACTAAGTGATTATGGAGTTTTCATCTCCATGTCTTTACGAAACCATTTAAACTTTGAATATTTTTTGAAGATGCAAAAGTTAGTTGATATAATGAGAAAGTGAAAGTTTAAGGAGTGTAAAAACTAGATAAATTTGTTATTTGAGAATAACAATTGTAAAGTGTCTTTGATGCTAAAGAGTAAAATAAGGAATGCTAAGAGAAAAAAGAGAATGTTAAGGAGAAATAGAAGGTGTCAGATAAATTGTTTAGTTAGTAGCATTATATAAATGCGTAGGATGTATTTAATTTTATGTGCTCACATTCAGGAAGTTATATGGAGTTATTGAAAGTGCATTTGTTTACCTCTCTTCTAAAAGATTAGGATGATCAATCAGGGTAAATGAAAAATGATTAGGCACTCACTATACTTTGATACAATCATAGAAGAGAAACCCCCTCTCCAAATTTGTTTAAGATAACTAGCTAGATGTATAATCTTGGTCAATAAGTTGCTAGCTAGCTAAATTAGGCTGTTACCTAAGTGTAGCCTTATCCTTTGCCGAATTGGAAAAAAAGCAATAAATATTTGAAGTTGTTGCACGAGACATATTCATCTTTTGAAATTGAAGTTTTTATTCATGAAGATAGTGGTACTGTTTAACCATTGGGGATTTGAGGTTTTGGTTAAGAGTGCAAAATTGGGTATAATATGTACTGTTTGTTGTCGAGGCTAGCAACGCTGTAGATGATACGGTGGAAAGTGTTCTGCTGGGTTTAGATGAGTATATTGTATACGTCATCTAGTAGGGTACTAGCTTTAGTTTGTAGCAAAGTAGTGATTCCTATTCCTAACATCAGTCGAGGATTTGGGGAATTATGTACGCCTCACATCTTTGACCTTGTGAGTTTGGATCGTAAATCTGTAGAAGAAATAAAATAGCTGAATACAGGAACTACGAAGACTTAAGGTTTTGGCGTTCCTGTTGGTAGGGTAAACTTGGTTTGACTTACACTTTGTTTCGTTAGTGTTTGTGGAGGCCCTGGAGGGAATGGGAGGGGGGGGGGAAAGAGGGAAGGGAAATTTGAGCTTTCATTTTCCTTCCGTCTTTCCAACAATGAAGGGATTTGATTTATTAGAAGGGGAAGGTAAAATGGATCCCTCAATTTCTTTTCCCTTCCCTTTCCCTGCGCCTCTCCAAATAAGAGACATTATCTCGCTCACTTCACCTCTCCTCCCTTTCTCTCCAAAATTTTCTATCCAAACATCTATGAAGCATGGGTACGCCTCCCGGGTGCCGTTTCCCGTACCGGGTACGGGCTGGATTCGCCTAGGATACGTACCCATACGAATCCAAAGGGGCGGGTACGCGGGCAACTTTTGGGGACGGTTAAGGTGAAGTCGGGGACGGGCTGGGTACGTATTTGAAGAGGAAGGCACGTACCCAACAGGTATTGTGACATCTTAGAGGCCCAAATTCACATTTAGGGTTTACTTTTCCAAATTTCCCAAATTTTCTCTCACCTGAAGTGCGTCGCTCGCTCCTCGCCGCCGATCGTCTCACCTGAAGGAGGAAGACGTTTTTTCATAACGCCGGTGACAACTGAGAAGAAGACGAAGAGCCAGAAATTTGAAGCTTCATGGCAGCGGCGTAATGAAGAAGACGAAGAAGGATGTAGAAGGTGCGGTATCTCGGTGGTGACTAAATTCATGGGCTTATGACTACAATGAAATAGGAGTATTTATTTGGGTGAAGATGTATTAGGTTTATCACGTGCCCTTATTTGTTTGATGCCAGCCGTTCCCTCTCTCCCTTTTCCGTATTTTAAAAAGAACTTGCTGCCTGCTGTTCACCATATTTTTAAAGAGAATCTTATGCCAGCAGTAACAACAGCAAAAGTAAACAAAAATTTTACTCTATCTCCTTATAATATTATTATTATTGTTAGTTTTTTTTATTGGCTTTAGAAAACTAAAATTAAAAACTGAACGAGGCCTTTACTCCATCTCCTTTGATTTCCTTTGATTTCCTTTTTTCTTGATTGTTTCGAATATTAGTACTTTTTTTTATTTTGCTATTTATGTATGGATGTTTTATTCAGTTTTTTTTTAATGCCGAATCCATGCCGTACCCGTTTTTTGCAATTTTGATTTTGTCGTTTTCCGTCCCCGTACCCGTCCCGGTACCCGTTCCCGTACCCGTTTCCGTGCAACCTAGCCAAACATAGTGTAAGTTCCATCTTCTTGGTAATAAAAGGAGAGAAATAAAAGCTCTCAAGTGAGGTTGTATTCCTCCACGTAGCGATGTTTGTTAGTTTGCAATAGCGTCTTGGTAGAAACTTAAGCTACTGGCGCCAAGTTTCAGATTCCAAACGCAATACAACAACAACAAAGCCTTAGTCCCAACATGATTTGGGGTCGGCTAACATGAATCGTCGTAGGAGATCGTCAAAAAAACAAGGAAGAGAAAGTGGAATTAATGAAAGTAAGATAAGAGAAAAATGTATATATATTATAGAAGAAATATTGTAAGAGATAATAAAAATAAGTAAAGTTTAAAATAAATAAATAAGTAAAATAAGTATATTTCAAAATAGCATGTAAATTAAAAAAAATTAAAGAATTTTAAAAATTAAATAAAAATAAAAATAAAATAAAAAATAGAAAGAAACAAAAACATGAAATCTGTATAAATCAACTGAAGTCATCAATGTATATTCTCTCCCTCCACTCTGTCCTATACAACGCCATATTTTCCTCAATCCCAAGAAAGCTCATATCGTGCTCAATCACCTTCCTCCAAGTTTTCTTAGGTCTTCAAGAAATGTGTAGATTCCAAACGCAATGTGAAGGCAAATTGATGGAATAAAATGACAAGGCTTTAATTTGAGAGACCGACTTGCATTTTAGTTATCTGGTGCTTAATATTTTTAATTATTAATTGTATAGAATTATGCGAGTCCAAAACATTGGTTTAAGTTGTGATTAAATAGCAATTGAGACCATGGTGATTATGGTTTGTTGACTTAAAATAATCGTGAATGAAATTTTCCTATGCACAAATTGATGAAAAGGAACTGAAATGCTTGAGAATCTTGAGATAGCTTTGGACCTTTTATTTGGCAGTGTTCTACTGTTATTTCTTTATTTATTCCCGAATTTTTTTTGTGCTCTGAGATCAATACATTCTTTCGCCATAATTTTGGATATGAGGAAAAAGGAGGTTGGTTCCATTGTAAATGTGTAAGTGGGGCAAGTACTTTGAATCAAGAGGGCATGTATTTTCAGTCTTTAACCAAGTCATTTCAGGTTAAGTTGTAGTTTCTCTTTCCGATTGTTCTAAGGTTTATAATTTATTTTCATGGCCTGATGGTATGCATAATGGAAGTTGAGTAGCATTTAGCTGCTTAGATGCAGCTGTTACATCTTTGTGAAAACAGCATGCTTAGGTTGGAAACTTGGAATTGTTACATAGATGGTCATCATGGAAAAGTATCTGATATGTTGTATCTGTGGGTTTAAGATCTAGCACTCGGAGAAATTAACAATAGCTTTCTTGTTGAATTGGTGGCTTCAACCCTTTTATTTGGTGTCCCAATAAATTTGCAGAGATTTTCAGATCTATCATCCTTTGATGTCCGCAAATAAACTTATTTTCAATTTTGATGAGAGTTGGAATTGGCTGTTTCATGTAGTTGGATTAATAACCTTATCAAATACTTAGTTGTCGACCTGCCGTCCTCTACTAATTGTATGGTATGCTAATATATATATATTTTTTTGCCACTTCAGATCTACAAAATATCCACTTTCTGGCATTTAGCAGTGTTATGATGCATACATCTGAAACCTAAATGTTACCCTTTGTGCATTGTAAGATTCACTAGATTGGCATTTAGTAGAGAAAAAAAAAATTACTCATGGGACCAGCTAAATGTAGTGGTCGCAAACCATCTTGACCTCCCCAAATCCCACAAAAGGTGGGATCCACACCTGGTGCTATTAAAATCTAATTTTGTTACCTAAGAGACCCTTTAATATTGTTCAAGAAAAAGGCAAAACATACCATTTGGAAGGAAAATGGAAAACTAAAAAATATAACCTGATAGCTGTTATATAAGCTAACATGCTATGTTATTTCGACACTCCGGTGGAAGGTGTAACACCCCGACAATTCTCTCTTTTCTAAAACAACATTTTAATATAAAACGTAGATAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTGCAGCGGAAAACATAAAACTAACTTTAGGTTTATAAATAATCGATTACAGGTTTAAATCCCAAAAATCATCCAACGAAAATAAGGAAATATAAATAGTACAACAAGTTTAAAGTCCCAATTAACAAACCCAAGTTAACTCAGCAAATCAAAACTAAATACAAGCTCTCTATTCCCGATCCCAATGATGCAACATCTTCAAACCTGCAGATGGACAATGCTTATTGATCCTTAGAGACTGCTCACCAAAGATTGGGTCATCACAGGATCAATAAGGCATAGCCATGATCAACATGCACAAGCAAAAGCACGTAATCAGCAAAGCTGATTACTACATACTAAATCAATAATAATCCTAACATGATTCTATTAAACGAACAATCCTAACATGGTACTAAATAAAACATAAGCAAGGATAATCAAGATATATTGACTTGAAGACTATATTTGACTGAACTAGACCTTTGTATCATTAACATTATTTTAATTGAAATAGTCAATGGACTGAGTTGTCTACTAGAAACTTCTTCTTCTTCACTAAGGAAGACGAGGTACGGGCGCGACTCCGTAAACCCCAATGACCTGCGATATCGAGGGACTTTTAAATAAAAATAGAACCGGTGATCAATCCGGCCCCAGAAAAAGCCATAGGCTACCCATGACCCCAACTCCTGATTGTCCGTCACTTTAGACGTGCACAGTCTAAAGCTATTGCTACTCATTTTCACTTTACATGACTTAACTTTTAATACTTGGTTATGACTCATCAAACATTAATATTATATTCAACATGTAAACACAACTTCTTTTATCTTTGAATTAAACCAGTGATTACAACGTTCAACCAAGAGCCAATTCCAACTATTTTAATCCTTCCTTTATCCATATTTAAAAACCTTTATTAGGTATAAGGTTCAACTACCAAACAAGGTCCTCGGCCTTTATAAAGTAGTGAAAATCTAAAGAGGAACAACGATCAATAAAGATCTAAACCAATATTAAATAATATAAAGTTCCCCAAAACCAACATGCTTGCATCAGTATTCCATGCTAACATGATTCAATTCTTATAAATAAAGTTCTATGCTCAACGCATTAATTCAACGACATTGAACATGAAATTCCAACATAAACAAGTTCATAAATACATTCATCATATTCTCAATACAACACACATCCAAGCACACAGGTATGTACGTACCTTGTGTAAACAAACTGATAGGCCACTTTAACGAATTCAAAATTCGCCTACAAAGAATTCTCCGCCTAAAAACAACCAATAAAATTCCCCAATCAATATCCAACAATTTACAGCAATACTAAAGTACTCTAAATACACTCTAAACACATTTTGAACCATCCCCAATATCGAAACTTAACTAAATAACCTCCAAGCATAATAACNCCTAATTATCATAAACTCCAACAAACGTTCCTTTTTAAATTTCCAGCAATATAAAATAATTCAAAACTTGCTCAAAATATATTCAACATCCTTAAGATCATAAAAATAATAACTTTAATAGGTATAATCATTCTATTATGATTTTAAACATAATAAAACCTTAAAAATTCATGCTTTAATAGTTTAAAATACTTATTTAACCAAATTAATAAATCTGGAAATTAAATTTGTTACTTAAACATAATATAAATTCTGAAAATATACTTTAATTATAATAACTTGTAATTTATATTCAATAAACACGAATTAAATCACTAAACTAATTTAAAACCCTAACTTACATATTAATCAACCAAAACTGAAATTAATTAATTTACAATCTCAATATCAAATCTGAAAATTATAATTTAACTATAAAGATTAATAATTTAATTCAAGAAACATAAATTAAAATCAATAAACTTAAATCAAAATATTTAAATAACTTAGGGTTTAAGAAATAACCAAAACAAGAAGGGGAGAAGAAGAGGATAGCCGACGACAAGGGGCGGCGGCAGCAGGAACAAATGGTCGTGAATGTTGGTGGCGCAACGACGGTTCAGGTGGCAGGGAGGTCGTTGCACGACGTGAAGAAGGGAAGACGAACGCGCGGAGAAGAAAGAGGAGTGCTGCTGTGCGTGGAGGGTGCGGCAGCAGCAGGGCGGCGCGGTGGTTGCGCGGCTGTTGGTGGTGGTCGCTGGCGCAAAAACAGAAACACCCAAGTTCAGAGATAGAGCAAGGAACGAAAAGAAGAAAAACGAATGAGGGGAGAAGGAGAAGGAGGAGGAGAAGGAGGAGGAAGGATTACCGTACACAGGAGGAGGAGGAGCGACGGTGGTCGGGTGGTGGCGGCGGAGGATGGCCGACGGCGCTGGTGGTTCGGCGGAAAAACAAGGAGGAGGGTTTGAGTAATTCACGTGAAAGGGAGAGAGAGTTTGAGAGTTTGGTTTTTATTTTTTTTATTTTTTTCTTTCTTCTATTTCACGTGAAGTGAAAGGGTGAGAGTTTTGGCAATTTTCTTTGGGCTTTTTCCATGTGGGCTAGGATTAGGATTTGGGTTTTAGTGTTTGAGTCAAACCGAATAGGATTGTTTTTTTTTTTTTTTTTTCGAATTCCACGAGTTTTCCTAATTCAAATTCATTTCAACATAAATTCTAAAATTATTTTTGATTGCACAAACCGTTAAAATCTTTAGAATATATTTAAATGAAATTAAATATACATTAAATATATAAATATAATAAAGTTCCAAAAATCGTTAAATATTTAGAACGTACTTAAAATAAAATAAATATACGTTAATTATATATTTATTACTAAAATTCATAAATTCTATTTACATATAAATAATATATGTTAAAATATATTAATAAAATTTATAAATTTACGGGGGATTACAGAAGGAGAGTGTCGTTTGTTGACATGACACGACTCGCGACACGACATTCGACACGTGTCCAGGGAGGTGTCGGAGAAGGATCCGGAATTAGGTGCCGAGATCGGAGCAGGAGAGAAAAGGAGTTGGGAAAAAAAATCAATATTTGGTATCTAAGATGAAGATAAAGCTTGGTAGGCGAATAAATTAGTCTTACCCGGAACCAAAGGCACTGGATCTTGAATCTTTTACTAATTCGATGCTATCTGTGTCCAAATTTCGAACCCTAGCTCTAGCAATTGAAGGTCGGGGAAGGCGAAGAAAAAAAATATGTCGAGGCTTTTGTTGTAGAAGGAAAAACGAGATGAAAGCACTCGCCAATTCTTGTCTTCATTGATGAATGTTTTAGAGTTAGCCGCGCCTACTATTTTCTCCTTCCATTATCATTTTCTAATTTTCTTAATTTTTTGCCGTTTGCTAGTGGGCCTTTCCTTTGGTATTACCTTTTATTTTTATAATATACCAGGGTGGGAAAGTGGAAACAAACCCACTTGACTACTCTTTCTCACAAACTATTCATTTTTTTATTTGTTTATTTTTATGGGATAAATTGTTTTTTATCACCTGACAAAACTAGAACTTGTATCTTACCGCTTAAAAAAAAAAATTTAACTTGTTTTTACCACCTAAAATTGGAAAAATAGATGAAAATGTTATGTGGGGGACCACAATAAGAAATATTTCTGATATGTTCTTTTCTTCCACGACTTCATGTATTTGACTCCCTCCTCTTCCCCTACTTCCTTCTCTCCCATGAATTCACATAATTCTTCCCCTCCTATTAATTCACAAAATTGACAAAATTCAATGACGGTAAAGAGAGTAAGGTGAAGGAGTTAAAGGAAATCACCCATGGAGTGTAAAAGTCGGAGGGAAATGAATTAGTGTGCCCCACATAAATGTTTCATCTATTTTTCTGTTTCCAGGTAGTAAAAATCAAGTTATATATTTTTTAAGGTGGTAAAATACAAGTTTTAGTCTTTTAGGTGATAAAAAACAATATTTCGAGTTTATAGGTGGTACTAAACAATTTATCCTTTTTTATGTTTTTCTTTTCTAAATTTTTTGTAAGGAACTCTAATTCTTATTTTTTTTCTTATTTTTATGTTTACTTTGAGAAAATGTTTTTTTTTTAAAATTTTATTTATATAAAGTGTTGAATTTTTTTTCCTACACTTATATGGTAGCAGTGTCTAAAAAAACTAGTCAAGACACTCCTTTGACCGTATCAGAGTGTCTTCAAAGGTTTGGTTACTCTGACACCTCAGACATGACAAGTTGTGTCTGAGCACATAGCTAACATGTAAACTATCTCTACTCATAAACCTTCTATTCACTTTTTTTGACTCCCCTTCCACTATATTTTCCCTCTTGTTGGATTTACAGGAGCATATAACTCTTGCTAGAAAGGAATGGAAGGGGAGGATCATGGTTGTCATTACCGGAGATAAATCTTGGTTCGTGAGGCCGACCCCATCATTGGGATTAAGGCTTTAATGTTGTTGTTTTATTAATAATATGGTCGTCAATATCAAAATCATCTTGTATTAATCACCTTGCTTGGACATTTTGGGCAAAGTAAACTGATGGCGTGTTTAATTAATGTGGCTGGTAACTTTATCATCTGAAAGACTTATTTAATTATTTTCATGAAACTTGATTAATTCCTATTGTTCTGCATGCATTAGTTAGAGGCTATCAGCAATGTGTCCCTGTGACATTATTTCTCATGTGGGATTAGATTTACTGATGAGATAGGTAGTTTTTCTAAATTATTGGTGAAAATACTTGTTAAACCTTTTCATGTATGCTGGCGAGTGAAGGATTGGAAAAGCTTGGGTATCTTTAGTTCTTTACTACTTGCTGATATATTATATCTGCCAATATCTTGCAGGGAACAGGCCTCTCAACCAAGGAATGTGAGATATGTGACTTCTTTGTGTATATTCCACAATATGGAAGTGGTACTGCTTCATTAAACGTTACTATAGCAGCTTCTATAGTCCTTCATCACTTCGGAGGTAAATGCTGGGGATTGATCTTAAATCACAAAATTTTGTCAATGACTTGATTATATTTTTACATTACCATGGCCTACTCCTTTCCAGCCTGGGCAGGATTTAGTGAGAGGAGCCGTGATGGGAACAAATTTGTTGTTGCTGAAAGGCCAACAAGACAATCAAGGCGTAGTATGTGTACTGAATCAGATGATGCTGTTGTAGAGGAGCGTCGTCTTCGCAAGGAAAATGCTGCTCATAGTTTCCTTGATGAAACTGGTGACGGTGACGCAGGCACCAACTTCATGGATACATTATTTGACAAGTTAAACAGTAATGAAGTTGATTTAAGTGTCTCAGACCAAAATTTGATTAAATAGCTAGCTCCTTGGAACGTATCCAAGATGGCGTTGACTCTTATAGCCAGCCACGGCTAAACATCTCAAACTTTACAGTGATGGCTTCTGAGTTCCATGTCGCGTAAAGTAAAATCTTGAAAATGTACAATGATTTTTCTGTACCTTCAGTGAGTTTAGTTATTAGCCATAGACAGGACAGTCTTGCAACTTGGAAGTTGCCCCCAAACTGTCTGTGTTTCTCTCTCTTTTTCTGGATGGGAAACGTTTTAGGGATTGTGTGTGTCCAAGGAGCTTGTTTGGGTAAGCAAGACATGCGATTTCTTCGATAATTTAAAATTTGTTTCTTTACTGATTTATAAAATTCAGGATGTAAAGTAAACTGGGTAGAGAATTTCCAAATGCTGATTTCCTTGGAAGAAAGTGAAATTATTCTTTGATTTATGTTTGTCTACATTTACTCTGGATTGACATGATTTATTTTTGACAGTTTAGGAG

mRNA sequence

AAGAACACAAGGAACTGAGGGAATAAGCTCTAAAACCTCCGTTCTCTCTCTTCGGTTCTTTGTCTATTCGCCGCCACCTAACTACCCGCCATTAACGGAGTGTGACTGACCCACCATCGCTGGTCACTCAGTCACTTACCCATTCGGCTCCACAAAGCTATGAGCCACGGCGCACGGGGAGGAAACAAGCAGATCGAATCGAGTCGCCGTCATCTCCCGTCTTCGAAGAAGCAGTTCGGAGAAGAAGCAAAAACCCAAGCAAATTAGCCCAGATACCAAAAACCCTTTGCTTTACAATCAAACTAACTTTCCCCCCGACTCAAAAAAATGACCGAAAGTGGTTCCACTTCCGCTGTGGCTGTGGCGGTGGAAAGCTATGTAATGGTGCACAACATTGCTAAACGCCACAACGTCGGCACATTGGCCCGGAGCGCCACCGCTTTCGGCGTATCGGAGTTAATACTGGTTGGCCGCCGTGACTTTAACTCCTTCGGCAACCATGGCTCCGTCTCTCACCTCCGCTTTCGCCATTTCCACTCTCTAGTCGAGGCGCGTAACTACCTCAAGGAGAGAAATTGTGATATTTGTGGTGTGGAGATTACGAATGATGCTGTACCCGTTAATCAACATCCCTTTACCAGGAGTACTGCATTTTTACTCGGGAATGAGGGAACAGGCCTCTCAACCAAGGAATGTGAGATATGTGACTTCTTTGTGTATATTCCACAATATGGAAGTGGTACTGCTTCATTAAACGTTACTATAGCAGCTTCTATAGTCCTTCATCACTTCGGAGCCTGGGCAGGATTTAGTGAGAGGAGCCGTGATGGGAACAAATTTGTTGTTGCTGAAAGGCCAACAAGACAATCAAGGCGTAGTATGTGTACTGAATCAGATGATGCTGTTGTAGAGGAGCGTCGTCTTCGCAAGGAAAATGCTGCTCATAGTTTCCTTGATGAAACTGGTGACGGTGACGCAGGCACCAACTTCATGGATACATTATTTGACAAGTTAAACAGTAATGAAGTTGATTTAAGTGTCTCAGACCAAAATTTGATTAAATAGCTAGCTCCTTGGAACGTATCCAAGATGGCGTTGACTCTTATAGCCAGCCACGGCTAAACATCTCAAACTTTACAGTGATGGCTTCTGAGTTCCATGTCGCGTAAAGTAAAATCTTGAAAATGTACAATGATTTTTCTGTACCTTCAGTGAGTTTAGTTATTAGCCATAGACAGGACAGTCTTGCAACTTGGAAGTTGCCCCCAAACTGTCTGTGTTTCTCTCTCTTTTTCTGGATGGGAAACGTTTTAGGGATTGTGTGTGTCCAAGGAGCTTGTTTGGGTAAGCAAGACATGCGATTTCTTCGATAATTTAAAATTTGTTTCTTTACTGATTTATAAAATTCAGGATGTAAAGTAAACTGGGTAGAGAATTTCCAAATGCTGATTTCCTTGGAAGAAAGTGAAATTATTCTTTGATTTATGTTTGTCTACATTTACTCTGGATTGACATGATTTATTTTTGACAGTTTAGGAG

Coding sequence (CDS)

ATGACCGAAAGTGGTTCCACTTCCGCTGTGGCTGTGGCGGTGGAAAGCTATGTAATGGTGCACAACATTGCTAAACGCCACAACGTCGGCACATTGGCCCGGAGCGCCACCGCTTTCGGCGTATCGGAGTTAATACTGGTTGGCCGCCGTGACTTTAACTCCTTCGGCAACCATGGCTCCGTCTCTCACCTCCGCTTTCGCCATTTCCACTCTCTAGTCGAGGCGCGTAACTACCTCAAGGAGAGAAATTGTGATATTTGTGGTGTGGAGATTACGAATGATGCTGTACCCGTTAATCAACATCCCTTTACCAGGAGTACTGCATTTTTACTCGGGAATGAGGGAACAGGCCTCTCAACCAAGGAATGTGAGATATGTGACTTCTTTGTGTATATTCCACAATATGGAAGTGGTACTGCTTCATTAAACGTTACTATAGCAGCTTCTATAGTCCTTCATCACTTCGGAGCCTGGGCAGGATTTAGTGAGAGGAGCCGTGATGGGAACAAATTTGTTGTTGCTGAAAGGCCAACAAGACAATCAAGGCGTAGTATGTGTACTGAATCAGATGATGCTGTTGTAGAGGAGCGTCGTCTTCGCAAGGAAAATGCTGCTCATAGTTTCCTTGATGAAACTGGTGACGGTGACGCAGGCACCAACTTCATGGATACATTATTTGACAAGTTAAACAGTAATGAAGTTGATTTAAGTGTCTCAGACCAAAATTTGATTAAATAG

Protein sequence

MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSDQNLIK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11742.1	Spo11742.1	mRNA

Homology

[Close]

BLAST of Spo11742.1 vs. NCBI nr
Match: gi|902238215|gb|KNA25084.1| (hypothetical protein SOVF_009760 [Spinacia oleracea])

HSP 1 Score: 489.6 bits (1259), Expect = 3.200e-135
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1

		  
Query: 1   MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS 60
           MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS
Sbjct: 1   MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS 60

Query: 61  VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST 120
           VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST
Sbjct: 61  VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST 120

Query: 121 KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ 180
           KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ
Sbjct: 121 KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ 180

Query: 181 SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD 240
           SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD
Sbjct: 181 SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD 240

Query: 241 QNLIK 246
           QNLIK
Sbjct: 241 QNLIK 245

[Close]

BLAST of Spo11742.1 vs. NCBI nr
Match: gi|731377730|ref|XP_010667958.1| (PREDICTED: uncharacterized protein LOC104884946 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 399.4 bits (1025), Expect = 4.400e-108
Identity = 192/231 (83.12%), Postives = 211/231 (91.34%), Query Frame = 1

		  
Query: 14  VESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLV 73
           VES+V+VHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS+SHL FRHFHSL+
Sbjct: 10  VESFVIVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSISHLHFRHFHSLI 69

Query: 74  EARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIP 133
           EARN+LKER CDICGVEITN+A PVNQHPF+RSTAFLLGNEGTGLS KECEICDFFVYIP
Sbjct: 70  EARNFLKERGCDICGVEITNNAAPVNQHPFSRSTAFLLGNEGTGLSVKECEICDFFVYIP 129

Query: 134 QYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAV 193
           QYGSGTASLNVTIAASIVLHHFG WAGF+ER+RDGNKFVVAE+PTRQSRR   TE+DDA+
Sbjct: 130 QYGSGTASLNVTIAASIVLHHFGVWAGFTERTRDGNKFVVAEKPTRQSRRGCSTETDDAI 189

Query: 194 VEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSDQNLI 245
           VEERRL++E+AA+ F DE GDGDA TN +DTLFDKL  N+ D SVS +  I
Sbjct: 190 VEERRLKREDAANRFFDERGDGDACTNLLDTLFDKLEDNKTDFSVSGETSI 240

[Close]

BLAST of Spo11742.1 vs. NCBI nr
Match: gi|870841069|gb|KMS95008.1| (hypothetical protein BVRB_013280 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 399.4 bits (1025), Expect = 4.400e-108
Identity = 192/231 (83.12%), Postives = 211/231 (91.34%), Query Frame = 1

		  
Query: 14  VESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLV 73
           VES+V+VHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS+SHL FRHFHSL+
Sbjct: 8   VESFVIVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSISHLHFRHFHSLI 67

Query: 74  EARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIP 133
           EARN+LKER CDICGVEITN+A PVNQHPF+RSTAFLLGNEGTGLS KECEICDFFVYIP
Sbjct: 68  EARNFLKERGCDICGVEITNNAAPVNQHPFSRSTAFLLGNEGTGLSVKECEICDFFVYIP 127

Query: 134 QYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAV 193
           QYGSGTASLNVTIAASIVLHHFG WAGF+ER+RDGNKFVVAE+PTRQSRR   TE+DDA+
Sbjct: 128 QYGSGTASLNVTIAASIVLHHFGVWAGFTERTRDGNKFVVAEKPTRQSRRGCSTETDDAI 187

Query: 194 VEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSDQNLI 245
           VEERRL++E+AA+ F DE GDGDA TN +DTLFDKL  N+ D SVS +  I
Sbjct: 188 VEERRLKREDAANRFFDERGDGDACTNLLDTLFDKLEDNKTDFSVSGETSI 238

[Close]

BLAST of Spo11742.1 vs. NCBI nr
Match: gi|225432460|ref|XP_002278797.1| (PREDICTED: uncharacterized protein LOC100252797 isoform X1 [Vitis vinifera])

HSP 1 Score: 356.7 bits (914), Expect = 3.300e-95
Identity = 166/215 (77.21%), Postives = 196/215 (91.16%), Query Frame = 1

		  
Query: 12  VAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHS 71
           + VESYV+VHNIAKRHNVGTLARSA+A GVSELILVGRRDFNSFG+HGS SHLRFRHFHS
Sbjct: 1   MVVESYVVVHNIAKRHNVGTLARSASALGVSELILVGRRDFNSFGSHGSTSHLRFRHFHS 60

Query: 72  LVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVY 131
           L++AR++LKE++CDICGVEIT++AV VNQHPF RSTAFLLGNEGTGLS KECEICDFFVY
Sbjct: 61  LLDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVY 120

Query: 132 IPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDD 191
           IPQYG GTASLNVT+AASIVLHHFG WAGFSER RDGNKFVVAERP +Q RR+ CTE+ D
Sbjct: 121 IPQYGGGTASLNVTVAASIVLHHFGVWAGFSERIRDGNKFVVAERPAQQVRRNYCTETAD 180

Query: 192 AVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLF 227
           +++EER++R++NA++ F DE+G G++ +N +D LF
Sbjct: 181 SIIEERKIRRQNASNGFFDESGSGESPSNLLDALF 215

[Close]

BLAST of Spo11742.1 vs. NCBI nr
Match: gi|1021031996|gb|KZM89780.1| (hypothetical protein DCAR_022857 [Daucus carota subsp. sativus])

HSP 1 Score: 355.5 bits (911), Expect = 7.300e-95
Identity = 169/215 (78.60%), Postives = 193/215 (89.77%), Query Frame = 1

		  
Query: 13  AVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSL 72
           +VE YV+VHNIAKRHNVGTLARSATAFGV+ELILVGRRDFNSFG+HGS SH RFRHFHSL
Sbjct: 20  SVECYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNSFGSHGSTSHCRFRHFHSL 79

Query: 73  VEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYI 132
            +AR++LKE++CDICGVEIT+DAV VNQHPFT+STAFLLGNEGTGLS+KEC ICDFFVYI
Sbjct: 80  ADARSFLKEKDCDICGVEITDDAVAVNQHPFTKSTAFLLGNEGTGLSSKECAICDFFVYI 139

Query: 133 PQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDA 192
           PQYG GTASLNVTIAASIVLHHFG WAGFSERSRDGNKFVVAERP +QS R+ CTE+ + 
Sbjct: 140 PQYGCGTASLNVTIAASIVLHHFGVWAGFSERSRDGNKFVVAERPVKQSGRNYCTETAET 199

Query: 193 VVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFD 228
           ++EER+LRKENA + F DE+   D+ +N +D LFD
Sbjct: 200 IIEERKLRKENALNGFFDESVKQDSPSNLLDALFD 234

[Close]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1L2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009760 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 2.300e-135
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1

		  
Query: 1   MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS 60
           MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS
Sbjct: 1   MTESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS 60

Query: 61  VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST 120
           VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST
Sbjct: 61  VSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLST 120

Query: 121 KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ 180
           KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ
Sbjct: 121 KECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQ 180

Query: 181 SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD 240
           SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD
Sbjct: 181 SRRSMCTESDDAVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSD 240

Query: 241 QNLIK 246
           QNLIK
Sbjct: 241 QNLIK 245

[Close]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B579_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013280 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.100e-108
Identity = 192/231 (83.12%), Postives = 211/231 (91.34%), Query Frame = 1

		  
Query: 14  VESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLV 73
           VES+V+VHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGS+SHL FRHFHSL+
Sbjct: 8   VESFVIVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSISHLHFRHFHSLI 67

Query: 74  EARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIP 133
           EARN+LKER CDICGVEITN+A PVNQHPF+RSTAFLLGNEGTGLS KECEICDFFVYIP
Sbjct: 68  EARNFLKERGCDICGVEITNNAAPVNQHPFSRSTAFLLGNEGTGLSVKECEICDFFVYIP 127

Query: 134 QYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAV 193
           QYGSGTASLNVTIAASIVLHHFG WAGF+ER+RDGNKFVVAE+PTRQSRR   TE+DDA+
Sbjct: 128 QYGSGTASLNVTIAASIVLHHFGVWAGFTERTRDGNKFVVAEKPTRQSRRGCSTETDDAI 187

Query: 194 VEERRLRKENAAHSFLDETGDGDAGTNFMDTLFDKLNSNEVDLSVSDQNLI 245
           VEERRL++E+AA+ F DE GDGDA TN +DTLFDKL  N+ D SVS +  I
Sbjct: 188 VEERRLKREDAANRFFDERGDGDACTNLLDTLFDKLEDNKTDFSVSGETSI 238

[Close]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Match: A5AVL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02300 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.300e-95
Identity = 166/215 (77.21%), Postives = 196/215 (91.16%), Query Frame = 1

		  
Query: 12  VAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHS 71
           + VESYV+VHNIAKRHNVGTLARSA+A GVSELILVGRRDFNSFG+HGS SHLRFRHFHS
Sbjct: 1   MVVESYVVVHNIAKRHNVGTLARSASALGVSELILVGRRDFNSFGSHGSTSHLRFRHFHS 60

Query: 72  LVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVY 131
           L++AR++LKE++CDICGVEIT++AV VNQHPF RSTAFLLGNEGTGLS KECEICDFFVY
Sbjct: 61  LLDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVY 120

Query: 132 IPQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDD 191
           IPQYG GTASLNVT+AASIVLHHFG WAGFSER RDGNKFVVAERP +Q RR+ CTE+ D
Sbjct: 121 IPQYGGGTASLNVTVAASIVLHHFGVWAGFSERIRDGNKFVVAERPAQQVRRNYCTETAD 180

Query: 192 AVVEERRLRKENAAHSFLDETGDGDAGTNFMDTLF 227
           +++EER++R++NA++ F DE+G G++ +N +D LF
Sbjct: 181 SIIEERKIRRQNASNGFFDESGSGESPSNLLDALF 215

[Close]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Match: A0A161ZT46_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022857 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 5.100e-95
Identity = 169/215 (78.60%), Postives = 193/215 (89.77%), Query Frame = 1

		  
Query: 13  AVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSL 72
           +VE YV+VHNIAKRHNVGTLARSATAFGV+ELILVGRRDFNSFG+HGS SH RFRHFHSL
Sbjct: 20  SVECYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNSFGSHGSTSHCRFRHFHSL 79

Query: 73  VEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYI 132
            +AR++LKE++CDICGVEIT+DAV VNQHPFT+STAFLLGNEGTGLS+KEC ICDFFVYI
Sbjct: 80  ADARSFLKEKDCDICGVEITDDAVAVNQHPFTKSTAFLLGNEGTGLSSKECAICDFFVYI 139

Query: 133 PQYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDA 192
           PQYG GTASLNVTIAASIVLHHFG WAGFSERSRDGNKFVVAERP +QS R+ CTE+ + 
Sbjct: 140 PQYGCGTASLNVTIAASIVLHHFGVWAGFSERSRDGNKFVVAERPVKQSGRNYCTETAET 199

Query: 193 VVEERRLRKENAAHSFLDETGDGDAGTNFMDTLFD 228
           ++EER+LRKENA + F DE+   D+ +N +D LFD
Sbjct: 200 IIEERKLRKENALNGFFDESVKQDSPSNLLDALFD 234

[Close]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Match: A0A151STS6_CAJCA (tRNA guanosine-2'-O-methyltransferase OS=Cajanus cajan GN=KK1_004444 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 6.600e-95
Identity = 164/212 (77.36%), Postives = 194/212 (91.51%), Query Frame = 1

		  
Query: 15  ESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLVE 74
           ESYV+VHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFG+HGS SHL FRHFHSL +
Sbjct: 4   ESYVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGSHGSSSHLGFRHFHSLQD 63

Query: 75  ARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQ 134
           ARN+LK+++CDICGVEIT+DA+PVN+HPFT++TAFLLGNE TGLS KECEICDFFVYIPQ
Sbjct: 64  ARNFLKDKDCDICGVEITHDALPVNRHPFTKTTAFLLGNEATGLSPKECEICDFFVYIPQ 123

Query: 135 YGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAVV 194
           YG GTASLNVT+AASIVLHHF  WAGF+ERSRDGNKFVVAERP +Q+RR+ CTE++++++
Sbjct: 124 YGGGTASLNVTVAASIVLHHFAVWAGFTERSRDGNKFVVAERPVKQNRRNYCTEAEESII 183

Query: 195 EERRLRKENAAHSFLDETGDGDAGTNFMDTLF 227
           EER+ R+ENAA+ F DET  G++ +N +D LF
Sbjct: 184 EERKARRENAANGFFDETESGNSSSNLLDALF 215

[Close]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Match: YSGA_BACSU (Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 3.200e-10
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1

		  
Query: 28  NVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLVEARNY------LKE 87
           N+GT+ R+A A G+  ++L G    ++F N  ++   +  HFH  V  RN       LK 
Sbjct: 117 NLGTMIRTADAAGLDAVVL-GDGTADAF-NGKTLRSAQGSHFHIPVVRRNLPSYVDELKA 176

Query: 88  RNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGSGTAS 147
               + G  + N A P  + P + S A ++GNEG G+     E  D  +Y+P YG    S
Sbjct: 177 EGVKVYGTALQNGA-PYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYVPLYGQ-AES 236

Query: 148 LNVTIAASIVLHH 155
           LNV +AA+I+++H
Sbjct: 237 LNVAVAAAILVYH 245

[Close]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Match: TRMH_ECO57 (tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli O157:H7 GN=trmH PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.500e-10
Identity = 40/139 (28.78%), Postives = 73/139 (52.52%), Query Frame = 1

		  
Query: 18  VMVHNIAKRHNVGTLARSATAFGVSELILV---GRRDFNSFGNHGSVSHLRFRHFHSLVE 77
           V +  + K HNV  + R+A A GV E+  V    R    +    GS S ++ +   ++ +
Sbjct: 22  VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81

Query: 78  ARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQ 137
           A  +LK +   I    ++++AV   +  +TR T  L+G E TG++ +   + D  + IP 
Sbjct: 82  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141

Query: 138 YGSGTASLNVTIAASIVLH 154
            G    SLNV++A++++L+
Sbjct: 142 IGM-VQSLNVSVASALILY 159

[Close]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Match: TRMH_ECOLI (tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmH PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.500e-10
Identity = 40/139 (28.78%), Postives = 73/139 (52.52%), Query Frame = 1

		  
Query: 18  VMVHNIAKRHNVGTLARSATAFGVSELILV---GRRDFNSFGNHGSVSHLRFRHFHSLVE 77
           V +  + K HNV  + R+A A GV E+  V    R    +    GS S ++ +   ++ +
Sbjct: 22  VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81

Query: 78  ARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQ 137
           A  +LK +   I    ++++AV   +  +TR T  L+G E TG++ +   + D  + IP 
Sbjct: 82  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141

Query: 138 YGSGTASLNVTIAASIVLH 154
            G    SLNV++A++++L+
Sbjct: 142 IGM-VQSLNVSVASALILY 159

[Close]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Match: TRMH_SHIFL (tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri GN=trmH PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.500e-10
Identity = 40/139 (28.78%), Postives = 73/139 (52.52%), Query Frame = 1

		  
Query: 18  VMVHNIAKRHNVGTLARSATAFGVSELILV---GRRDFNSFGNHGSVSHLRFRHFHSLVE 77
           V +  + K HNV  + R+A A GV E+  V    R    +    GS S ++ +   ++ +
Sbjct: 22  VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81

Query: 78  ARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIPQ 137
           A  +LK +   I    ++++AV   +  +TR T  L+G E TG++ +   + D  + IP 
Sbjct: 82  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141

Query: 138 YGSGTASLNVTIAASIVLH 154
            G    SLNV++A++++L+
Sbjct: 142 IGM-VQSLNVSVASALILY 159

[Close]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Match: Y955_SYNY3 (Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0955 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-8
Identity = 48/164 (29.27%), Postives = 73/164 (44.51%), Query Frame = 1

		  
Query: 3   ESGSTSAVAVAVESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGN----- 62
           +S ST+ V + ++S      I   HN+G + R+A AFG   ++L  RR            
Sbjct: 211 KSQSTAPVLIIIDS------ITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVA 270

Query: 63  HGSVSHLRFRHFHSLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTG 122
            G++ H       +L  A   LKE    I G  +      ++Q         ++G+EG G
Sbjct: 271 AGALEHFPVARVVNLSRALETLKESGFWIYGT-VAGKQTALHQADLREPMGLVIGSEGEG 330

Query: 123 LSTKECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWAGF 162
           LS    + CD  + IP  G  T SLN ++AA+I L+      GF
Sbjct: 331 LSLLTQKHCDHLITIPLAGK-TPSLNASVAAAISLYEIFRQRGF 366

[Close]

BLAST of Spo11742.1 vs. TAIR (Arabidopsis)
Match: AT4G15520.1 (tRNA/rRNA methyltransferase (SpoU) family protein)

HSP 1 Score: 329.7 bits (844), Expect = 1.500e-90
Identity = 157/215 (73.02%), Postives = 188/215 (87.44%), Query Frame = 1

		  
Query: 15  ESYVMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSVSHLRFRHFHSLVE 74
           ESYV+VHNIAKRHNVGTLARSATAFGV+ELILVGRRDFN+FG+HGS SH+RFRHFHSL+E
Sbjct: 5   ESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFGSHGSASHIRFRHFHSLIE 64

Query: 75  ARNYLK-ERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYIP 134
           ARNYLK E++CDICGVEI + A  VN+HPF R+TAFLLGNEG+GLS KE EICDFFVYIP
Sbjct: 65  ARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVYIP 124

Query: 135 QYGSGTASLNVTIAASIVLHHFGAWAGFSERSRDGNKFVVAERPTRQSRRSMCTESDDAV 194
           QYG GTASLNVT+AASIVLHHFG WAGFSER RDG+KF+VA+RP RQ RR+ C  ++++V
Sbjct: 125 QYGCGTASLNVTVAASIVLHHFGVWAGFSERVRDGSKFIVADRPVRQGRRNFCAGTEESV 184

Query: 195 VEERRLRKENAAHSFLDETG--DGDAGTNFMDTLF 227
           +EER+LRKE+A + F D+ G  +G + ++ +D LF
Sbjct: 185 IEERKLRKESAENGFFDDNGNENGSSSSDLLDGLF 219

[Close]

BLAST of Spo11742.1 vs. TAIR (Arabidopsis)
Match: AT5G15390.1 (tRNA/rRNA methyltransferase (SpoU) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-10
Identity = 50/182 (27.47%), Postives = 82/182 (45.05%), Query Frame = 1

		  
Query: 18  VMVHNIAKRHNVGTLARSATAFGVSELILVG-----RRDFNSFGNHGSVSHLRFRHFHSL 77
           ++V  ++   N+    RSA A G+  + +V      R + N   + G+   L    + + 
Sbjct: 157 LVVEGLSDFGNISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTP 216

Query: 78  VEARNYLKERNCDICGVEITNDAVPVNQHPFTRSTAFLLGNEGTGLSTKECEICDFFVYI 137
            E    LK R   I    +  D V +    ++  TA ++GNEG G+S +  E+ D    I
Sbjct: 217 KECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSI 276

Query: 138 PQYGSGTASLNVTIAASIVLHH--------FGAWAGFSERSRDGNKFVVAERPTRQSRRS 187
           P  G    S NV++AA I++HH         G+    SE  ++    ++AE   R SR S
Sbjct: 277 PMNGM-VDSFNVSVAAGILMHHAVSDRTTRLGSHGDLSEAEKE---ILMAEFSLRHSRSS 334

The following BLAST results are available for this feature:

BLAST of Spo11742.1 vs. NCBI nr
BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
BLAST of Spo11742.1 vs. TAIR (Arabidopsis)

BLAST of Spo11742.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902238215\|gb\|KNA25084.1\|	3.2e-135	100.	hypothetical protein SOVF_0097...	[more]
gi\|731377730\|ref\|XP_010667958.1\|	4.4e-108	83.1	PREDICTED: uncharacterized pro...	[more]
gi\|870841069\|gb\|KMS95008.1\|	4.4e-108	83.1	hypothetical protein BVRB_0132...	[more]
gi\|225432460\|ref\|XP_002278797.1\|	3.3e-95	77.2	PREDICTED: uncharacterized pro...	[more]
gi\|1021031996\|gb\|KZM89780.1\|	7.3e-95	78.6	hypothetical protein DCAR_0228...	[more]

BLAST of Spo11742.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9S1L2_SPIOL	2.3e-135	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B579_BETVU	3.1e-108	83.1	Uncharacterized protein OS=Bet...	[more]
A5AVL9_VITVI	2.3e-95	77.2	Putative uncharacterized prote...	[more]
A0A161ZT46_DAUCA	5.1e-95	78.6	Uncharacterized protein OS=Dau...	[more]
A0A151STS6_CAJCA	6.6e-95	77.3	tRNA guanosine-2'-O-methyltran...	[more]

BLAST of Spo11742.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
YSGA_BACSU	3.2e-10	33.8	Uncharacterized tRNA/rRNA meth...	[more]
TRMH_ECO57	9.5e-10	28.7	tRNA (guanosine(18)-2'-O)-meth...	[more]
TRMH_ECOLI	9.5e-10	28.7	tRNA (guanosine(18)-2'-O)-meth...	[more]
TRMH_SHIFL	9.5e-10	28.7	tRNA (guanosine(18)-2'-O)-meth...	[more]
Y955_SYNY3	4.0e-8	29.2	Uncharacterized tRNA/rRNA meth...	[more]

BLAST of Spo11742.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT4G15520.1	1.5e-90	73.0	tRNA/rRNA methyltransferase (S...	[more]
AT5G15390.1	1.2e-10	27.4	tRNA/rRNA methyltransferase (S...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 17..153 score: 2.4
None	No IPR available	PANTHER	PTHR12029	RNA METHYLTRANSFERASE	coord: 17..180 score: 3.3
None	No IPR available	PANTHER	PTHR12029:SF48	OBP33PEP LIKE PROTEIN	coord: 17..180 score: 3.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0051604	protein maturation
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008026	ATP-dependent helicase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08767	0.72	Barchart \| Table
Spo04497	0.71	Barchart \| Table
Spo14884	0.70	Barchart \| Table
Spo23347	0.70	Barchart \| Table
Spo07075	0.70	Barchart \| Table
Spo11780	0.70	Barchart \| Table
Spo14858	0.70	Barchart \| Table
Spo01806	0.69	Barchart \| Table
Spo21278	0.69	Barchart \| Table
Spo23398	0.69	Barchart \| Table
Spo01130	0.69	Barchart \| Table
Spo14323	0.68	Barchart \| Table
Spo04538	0.68	Barchart \| Table
Spo13241	0.68	Barchart \| Table
Spo15235	0.68	Barchart \| Table
Spo09245	0.68	Barchart \| Table
Spo15711	0.68	Barchart \| Table
Spo16460	0.67	Barchart \| Table
Spo05336	0.67	Barchart \| Table
Spo04350	0.67	Barchart \| Table
Spo15656	0.67	Barchart \| Table
Spo03603	0.67	Barchart \| Table
Spo27040	0.66	Barchart \| Table
Spo00849	0.66	Barchart \| Table
Spo03527	0.66	Barchart \| Table
Spo04501	0.66	Barchart \| Table
Spo05941	0.66	Barchart \| Table
Spo15641	0.66	Barchart \| Table
Spo17696	0.66	Barchart \| Table
Spo22275	0.66	Barchart \| Table
Spo24395	0.66	Barchart \| Table
Spo00221	0.66	Barchart \| Table
Spo00342	0.65	Barchart \| Table
Spo04323	0.65	Barchart \| Table
Spo20101	0.65	Barchart \| Table
Spo05891	0.65	Barchart \| Table
Spo21728	0.65	Barchart \| Table