Spo17938 (gene)

Overview
NameSpo17938
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMitochondrial import inner membrane translocase subunit tim16
Locationchr3 : 50147763 .. 50152463 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAGTATGTTTCTCTATATCTATTTTTATCAATTCATTTGGATTCTTTTCATTTTTAAGGTTTTCAATCAACTAATCCCACTTGTGAAACCTATGTTCATGTGTTTGTAGGGTTTTTTAATTCATTGTGTTCTTTATCCATATTATTGGGGTTTGATGTAAAATTTGTGCCCAAAATTGATGTAATAGTTAGGAGTACAATAGGATATATTGGTTTTCCTGTTTACAGGATTAAAATGATTGGGTAATGGGTGTATTTATTCTTTGATGTTATAATTATATTTCTATTTGATTATGTTTCCTATTACTAGTAGTTTGGAATATGTATTCCATGATTTTAGAATGGATATTAGAAGTCTGAAGTGTTGGCTGTTGCAATCGAAGCGAACTTTCTGTTGGATTTCTTGGCTACTCTCTTCGTGTTTCATTTAAATTAGTTTATTATGAGGAGAAGGGGAGAGGAAAGACTGAGACTTAGATGAGTTAAATCATGTTGATGTTACTATGGAAGGGGTTTGAAGATGAGGGGAAGTGATTTTTTTCAAGGTCTTGATTATATTTTTGGTGTATTGGAAAGTAGTGTTTGTGCATTTCAGTGTATGGCTCCTAAACTCGTTATATCATTCTACCGAATCCCATATATCTTCCTCTGAAAACGTCTGGTATCTCTGGAGGTAATAAAACACAAATAATCATGCCTTCACATTTCCAGTCCTTTTGATATTTCCTCTGAACCGTGGAGCAACTATGTATCTTTTGGGTAAATGAAGTCTTTCGAAACTCTACCAACATTGAGGTTTTTTGGATATTCTCACGCTTAGTTTTCACTCCTTCATGCTCCCCTGCAATAGAAAGGAAATGTTGGTTGCTTTAATATATACCATAACAATGGAGAGCAAAGAAATTTCATATCCAAGGAAAAGTTGTTTGCTTGATTTTTGTCAGCAGCAACTCTTATATTATTTATTTGTTACACTTTTTATAAGGTCCTGCAGAACTACTTTGGAAGCCACTATTTATATAATTATATTCAGCTTCTTACTAGATCTTATGAATTTCCAATTTAGCATTTGTCTTTAGTCTATGTTTTGACTTGTTATGAGAATTTTACTCAGAACAATGGATGTAGACTACGAGTCATGATTCGTATTTTTACTTTCAAGTGAGCAATCTCATAAGAGCGAGTTCTAACCTTTAAAATGGGGTTGCCTAGATCATTTTAGGTCTAGTATCATCTACTTCATTTCTTAGCTGTGGGATTCTACATGAACACTTCTGAAACTTTCCTCCACATTTTATTGATATTTTCACTTGGTGTTTGAGATGGGCTGATAAAGTTTCTCAAACAGGATGTACTCCCTGAAAGTTTTTTTGGAAACAGATGCGTGGGTCTAACATATGGGTTGGGTTTCATTTTCTAGAGAGATGTTGGGTTATGCCTTTTTCTTTTACTATTTTGTTAGAGAGATGCTGGTTTATGCCTTTTTCTTTTACTATTTTGTTAACCATTACTGGCCTTTAAGTCTGGGTTTAGTGTCTGTGAGGGCATTTTGGTGGCAAGTTGACAAGGTTGGTTACGTTGGGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACGCCTTTTAGTGATCGAAGGGCCTATGTTCAGATCTTTAAATTGCAACTGCTCCATATTCCTCAAATGTTTTCGGATCTGATTACCAGAAGATATATGATGCCGCCATGGCATTTTGGTTTCTTAGGTTGTTTATGTGCTTCACCTGTTTTCTTTGCCAGTTTCTTTTGACATTGGACCGTAGGAGGTTGCATTGAAACCTATGCGACCTCCCTCCTCGTTTCTTTACACTTCACTAGTGGTTTTGGCTTGATCAAGATAAGTCTTTTATGCATAATAGTGGCTTTTTGTAGTGTCAATAAAAATATTTTTCATGTTTTTTGTAAAAAGTTTCACCCAACACCCTCACTGTTGTAAGTTGTAAGTCCTTGTAATTTATAGAGTTGTACCCTTTAAAATCGAATTGGTTAAGATGCTATGTATAGTTCATATAATTAATATAAACCTCAAGCAATCTTAAACTGTAGCGTAGGGCCATAGTAAACTTCTATTTGTTAATTCTTTTCACTAATGTGCAAAATGAATGGAGTGGTCTTTTAAACATGGCTTAAGCTCTTCTTTAAAGAACTGTAGGAAAAAAAGCTCTTCTTCAAAGGAAAATTAGGCACTAACCTTAGGTTACCCATTGGGTGATCAGTTAATCACAATAGGTTTCCTGCGGTTCAATCTGAGGTCTGTGAGCCCTATGGCCTTTCATTTTTACCATATCCTTCTTTGTTTATTTCACATTCTTTATCCCCACCATCAACATATCATCTAATTTCAACTGTTGTCACTTCTATTTCCAAGTAGTCCTTCTGGTGTTCTCCCTTCTTTTACCTCTTGGCATGTTTCATGTGATGGCGTTCCTTAAATCCTTACTAGATTTAACTGCTGTCATTGGATTTTAGTTAGTTCAGTCTTTGTCCCTTTTTATCTTTCTCAGGGACTATGCTTATTTCTTCTAGATTGCTAGGCCTGCTAGCTGTTGCCCTCTTTTGGCCCTTTTGATTTGAGACGCCATTTTTTTCATTCCTTTTTTGAAGCTGTTGGACTTGTAGTCTTGATCTTAATGAAAATTCCCAGTAGGGGTCTAGGCCATTCCCTACACATTTGCCTTTATTTATTTATTTAGGGGTGGGGGGGGAAGAGGGGAATATGCCCATCACCAATTCTCCTAATTTTATTTCTACTTATTTTTATTTTTGGTGCCCATGTTAGCAAACATCCTATAAATAATTGTAATTGATCTTCGATTGATAGCTTGGCCCTTATCACATAGGCACCTCTAGATTTTGTCTCCAAATTTTCTAATTAGTCTAATGCACCATCCTTGCTTTGTTCTTTCATCGGTCTAATATAAAATTGACAGTTTACCTTTCCTACTTTTCTGTCCCTTTTGAAATTCCTAGGGCGTTGATACCACTTTAGGAGCAGATGTTATATGTCAGTGTACAGTGAAGCAACTAGAAAGGATGAAGAGTAGATGTGTGTTGTGTTGTGAACTGGATACTATGAAGTTAACTAGATATGGTTGAGATGTAAGGCGTCTTAAAACTTCCAGTTCCAGAAGAACGAAAAATTATTAATTTAGAAACATTAGACAATAAAAAACTTGATGATTTTATTTGATATTGTGTGTTACAAACTTACAATGCCTTCTACTTCTGCTTCCTATTTTATGTAAGTGTTCAAGTAAGTAAGAGATACTAGCTACATGCCATTCTACCGCTCACTAGATTTTATTGAGGCGTCAGCTGAACTTTATAGTATTACCTGAACACCTTGGACCTTTTTGAACTTATCACAACTTACATTTTCCTGACATTTTATTCCCTCTGTCCCATACTAGTCTATAGACTATACATATACATTTTTCTGGATGTCCCATGTTAATCTTCATTATCTTTGCTATTACTTATATGTCATAGGAAATAGATAATGTGTGCATAATTTATTTTCTTCTTGTTTCGAATGTTAAAACATAAAGGATAAGTATTGGTCAAGGAATGATTAGGGGTTTACTACAGCCCTTTATCCTTTTTTGTTTGATTTTGAAGAAATACGTGGTGTTAAATTATGAATCCAGCCATAGAATCTTGTTAAGCGTGTAAGATTTCATCTCATGGAAGAGTACTATAAATTGCCCATGCAATTTGCAGTTTCAACTTTCAACCATTTTTAACCTTTCCTGCATTGCAGATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAGTACGTTCACATCTCTTGATTTTCTTTTTGGTGCGTGTGTGTTGACTTTCTAGTATGTTTGGTGATTGTGTTCATAATTTTCATTGGTTTATGCAGAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAACTTGAACTTGTTGTACATAAAGAGAGTATCATCTTGATAATTAGAATATGAATTTTTAACATAGTGTTTGTTCATTTTTGGTCCTTGGCCGTTTCTGGCCCCACCACCGTCTCCTCTACCTCTATGCAACGAGATATTGTTTGTTTCATAAAAGTTTTTGAAGCATCACATGAGTAGTTACAATTGTGTTAATCATATCTATTCCTCAATGTATGAGTATGAGTAGTTAGCCTGCAACTTGACAATATCTTATAAGCAGATTTTTGGATACTTTGATAAGGCCAAAACCATTCTCGACAGGATAAAAACATTGGTGCCTCGAAACATTTGCAATGAAAGCAGCAAATTTGCAAAGTGCTAACTGTTCTGGTTGCTCTTGTACTTTTGTTTGGTTTTGTTTTTTTTAATGTTGTTTACAAGTGTTCTACCGTTTTCCCACCCA

mRNA sequence

ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAACTTGAACTTGTTGTACATAAAGAGAGTATCATCTTGATAATTAGAATATGAATTTTTAACATAGTGTTTGTTCATTTTTGGTCCTTGGCCGTTTCTGGCCCCACCACCGTCTCCTCTACCTCTATGCAACGAGATATTGTTTGTTTCATAAAAGTTTTTGAAGCATCACATGAGTAGTTACAATTGTGTTAATCATATCTATTCCTCAATGTATGAGTATGAGTAGTTAGCCTGCAACTTGACAATATCTTATAAGCAGATTTTTGGATACTTTGATAAGGCCAAAACCATTCTCGACAGGATAAAAACATTGGTGCCTCGAAACATTTGCAATGAAAGCAGCAAATTTGCAAAGTGCTAACTGTTCTGGTTGCTCTTGTACTTTTGTTTGGTTTTGTTTTTTTTAATGTTGTTTACAAGTGTTCTACCGTTTTCCCACCCA

Coding sequence (CDS)

ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAA

Protein sequence

MQAGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQILGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17938.1Spo17938.1mRNA


Homology
[Close]
BLAST of Spo17938.1 vs. NCBI nr
Match: gi|902190878|gb|KNA11715.1| (hypothetical protein SOVF_132200 [Spinacia oleracea])

HSP 1 Score: 218.8 bits (556), Expect = 5.100e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI
Sbjct: 2   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG
Sbjct: 62  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 117
[Close]
BLAST of Spo17938.1 vs. NCBI nr
Match: gi|731339845|ref|XP_010681077.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 195.7 bits (496), Expect = 4.700e-47
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LVMGSG+LVRAFAQAYRQAL+NASKTGAAQEAM NTVR+ASKAITEQEARQI
Sbjct: 2   AARIIAQLLVMGSGLLVRAFAQAYRQALANASKTGAAQEAMQNTVRKASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGV EN AWEDILKKYD+LFERNAKQGSFY+QSKVHRAKECLEA++Q+KGQG ++G
Sbjct: 62  LGVTENTAWEDILKKYDILFERNAKQGSFYLQSKVHRAKECLEAVYQNKGQGPSSG 117
[Close]
BLAST of Spo17938.1 vs. NCBI nr
Match: gi|731322106|ref|XP_010671710.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM16-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.4 bits (459), Expect = 9.100e-43
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LV+GSG+L+RA +QAYRQA+ NASKTGAAQEAM NTVRRASKAITEQEARQI
Sbjct: 2   AARIIAQLLVVGSGVLIRAVSQAYRQAIVNASKTGAAQEAMQNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGVPENAAWE+I  KYDVLFERNAKQGSFY+QSKVHRAKE LE ++Q+KGQG++
Sbjct: 62  LGVPENAAWEEISNKYDVLFERNAKQGSFYLQSKVHRAKEYLEGVYQNKGQGNS 115
[Close]
BLAST of Spo17938.1 vs. NCBI nr
Match: gi|902189118|gb|KNA11290.1| (hypothetical protein SOVF_136610 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 7.200e-40
Identity = 87/110 (79.09%), Postives = 102/110 (92.73%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RI+AQ+LV+GSG+L+RA  QAYRQA+ NASKTGAAQEAM NTVRRAS+A+TEQEARQI
Sbjct: 2   AARILAQLLVVGSGVLIRAVGQAYRQAIVNASKTGAAQEAMQNTVRRASQALTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKG 113
           LGVPE AAWE+IL+KYDVLFERNAKQGSFY+QSKVHRAKE LE ++++KG
Sbjct: 62  LGVPEKAAWEEILRKYDVLFERNAKQGSFYLQSKVHRAKEHLEEVYRNKG 111
[Close]
BLAST of Spo17938.1 vs. NCBI nr
Match: gi|702433133|ref|XP_010069346.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucalyptus grandis])

HSP 1 Score: 169.5 bits (428), Expect = 3.600e-39
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A +I+A ++VMG GI+ RA  QAYRQAL+NASKTG AQE + NTVRRASKA+TEQEARQI
Sbjct: 2   AAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  AWEDILKKYD LFERNAK GSFYIQSKVHRAKECLE+++Q KGQ +
Sbjct: 62  LGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSN 114
[Close]
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWT5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132200 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.600e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI
Sbjct: 2   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG
Sbjct: 62  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 117
[Close]
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4D8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g139270 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.200e-47
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LVMGSG+LVRAFAQAYRQAL+NASKTGAAQEAM NTVR+ASKAITEQEARQI
Sbjct: 2   AARIIAQLLVMGSGLLVRAFAQAYRQALANASKTGAAQEAMQNTVRKASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGV EN AWEDILKKYD+LFERNAKQGSFY+QSKVHRAKECLEA++Q+KGQG ++G
Sbjct: 62  LGVTENTAWEDILKKYDILFERNAKQGSFYLQSKVHRAKECLEAVYQNKGQGPSSG 117
[Close]
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054070 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.300e-43
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LV+GSG+L+RA +QAYRQA+ NASKTGAAQEAM NTVRRASKAITEQEARQI
Sbjct: 2   AARIIAQLLVVGSGVLIRAVSQAYRQAIVNASKTGAAQEAMQNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGVPENAAWE+I  KYDVLFERNAKQGSFY+QSKVHRAKE LE ++Q+KGQG++
Sbjct: 62  LGVPENAAWEEISNKYDVLFERNAKQGSFYLQSKVHRAKEYLEGVYQNKGQGNS 115
[Close]
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVL0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136610 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.000e-40
Identity = 87/110 (79.09%), Postives = 102/110 (92.73%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RI+AQ+LV+GSG+L+RA  QAYRQA+ NASKTGAAQEAM NTVRRAS+A+TEQEARQI
Sbjct: 2   AARILAQLLVVGSGVLIRAVGQAYRQAIVNASKTGAAQEAMQNTVRRASQALTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKG 113
           LGVPE AAWE+IL+KYDVLFERNAKQGSFY+QSKVHRAKE LE ++++KG
Sbjct: 62  LGVPEKAAWEEILRKYDVLFERNAKQGSFYLQSKVHRAKEHLEEVYRNKG 111
[Close]
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.500e-39
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A +I+A ++VMG GI+ RA  QAYRQAL+NASKTG AQE + NTVRRASKA+TEQEARQI
Sbjct: 2   AAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  AWEDILKKYD LFERNAK GSFYIQSKVHRAKECLE+++Q KGQ +
Sbjct: 62  LGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSN 114
[Close]
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_NEUCR (Mitochondrial import inner membrane translocase subunit tim16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=un-4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-10
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRAS--KAITEQEAR 62
           A R+I Q++V+GS +L RAFA+AY+QA +++    A Q+  N    RAS    +T  EA 
Sbjct: 2   AYRLITQVVVVGSRVLGRAFAEAYKQAAASSQYQRAQQKNGNAATGRASLTSGMTLDEAC 61

Query: 63  QILGVPE-----NAAWEDILKKYDVLFERN--AKQGSFYIQSKVHRAKECLEA 107
           +IL V +      A  E++++++  LF+ N   K GSFY+QSKV RA+E LEA
Sbjct: 62  KILNVNKPADGTAANMEEVMERFKRLFDANDPEKGGSFYLQSKVVRARERLEA 114
[Close]
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.900e-9
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 

		  

Query: 5   RIIAQILVMGSGILVRAFAQAYRQ--ALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 64
           + +AQI+VMG+ ++ RAFA+A RQ  A S A+     Q    +    +   +T QEA+QI
Sbjct: 3   KYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQI 62

Query: 65  LGVPENAAWEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L +      E+I K Y+ LF+ N K   GSFYIQSKV RAKE L+
Sbjct: 63  LNI-STLTPEEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106
[Close]
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.600e-9
Identity = 42/111 (37.84%), Postives = 70/111 (63.06%), Query Frame = 1 

		  

Query: 1   MQAGRIIAQILVMGSGILVRAFAQAYRQALSNASK--TGAAQEAMNNTVRRASKAITEQE 60
           M   R + + +++GS ++ +AF QAY+Q ++NA++  TG A  + ++T  R  + +T QE
Sbjct: 1   MSLPRAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE-MTIQE 60

Query: 61  ARQILGV-PENAAWEDILKKYDVLFERN--AKQGSFYIQSKVHRAKECLEA 107
           A  IL + PE+    ++ K++  +FE N   K GSFY+QSKV RA E L++
Sbjct: 61  AGSILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKS 110
[Close]
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_YEAST (Mitochondrial import inner membrane translocase subunit TIM16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAM16 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.600e-9
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A R   Q+++ G+ +  +AFA+AYRQA S + K GA   +   T +     IT  E+ +I
Sbjct: 2   AHRAFIQVIITGTQVFGKAFAEAYRQAASQSVKQGATNASRRGTGKGEYGGITLDESCKI 61

Query: 63  LGVPENAA---WEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L + E+      + I  +++ LFE N K+  GSFY+QSKV+RA E L+
Sbjct: 62  LNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLK 109
[Close]
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_XENTR (Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.300e-8
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1 

		  

Query: 5   RIIAQILVMGSGILVRAFAQAYRQ--ALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 64
           + +AQI+VMG  ++ RAF +A RQ  A S A+     +    +    +   I+ QEA+QI
Sbjct: 3   KYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQEAQQI 62

Query: 65  LGVPENAAWEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L V +    E+I K Y+ LF+ N K+  GSFY+QSKV RAKE L+
Sbjct: 63  LNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLD 106
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BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Match: AT3G59280.1 (Protein Transporter, Pam16)

HSP 1 Score: 158.3 bits (399), Expect = 2.900e-39
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGR++A ++VMGSGI+ RA  QAYRQAL+NASK+G AQEAM N VR+A KAITEQEARQI
Sbjct: 2   AGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  +WE+IL+KYD LFE NAK GSFY+QSKVHRAKECLE +++S+G G+
Sbjct: 62  LGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGT 114
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BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Match: AT5G61880.1 (Protein Transporter, Pam16)

HSP 1 Score: 132.9 bits (333), Expect = 1.300e-31
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1 

		  

Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A R++A ++VMGSGI+ RA  QAYRQAL+NASKTG A EA   T++R    I E EARQI
Sbjct: 2   AARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEA-TQTIKRGL-TIGEAEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGV E ++W++ILKKYD LFERNA+ GSFY+QSKVHRAKECLE  +Q     SA
Sbjct: 62  LGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQKSTTTSA 113
The following BLAST results are available for this feature:
BLAST of Spo17938.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902190878|gb|KNA11715.1|5.1e-54100.hypothetical protein SOVF_1322... [more]
gi|731339845|ref|XP_010681077.1|4.7e-4786.2PREDICTED: mitochondrial impor... [more]
gi|731322106|ref|XP_010671710.1|9.1e-4381.5PREDICTED: mitochondrial impor... [more]
gi|902189118|gb|KNA11290.1|7.2e-4079.0hypothetical protein SOVF_1366... [more]
gi|702433133|ref|XP_010069346.1|3.6e-3975.2PREDICTED: mitochondrial impor... [more]
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BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QWT5_SPIOL3.6e-54100.Uncharacterized protein OS=Spi... [more]
A0A0J8C4D8_BETVU3.2e-4786.2Uncharacterized protein OS=Bet... [more]
A0A0J8CWB7_BETVU6.3e-4381.5Uncharacterized protein OS=Bet... [more]
A0A0K9QVL0_SPIOL5.0e-4079.0Uncharacterized protein OS=Spi... [more]
A0A059AV82_EUCGR2.5e-3975.2Uncharacterized protein OS=Euc... [more]
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BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TIM16_NEUCR4.6e-1042.4Mitochondrial import inner mem... [more]
TIM16_DANRE3.9e-943.8Mitochondrial import inner mem... [more]
TIM16_SCHPO6.6e-937.8Mitochondrial import inner mem... [more]
TIM16_YEAST6.6e-937.9Mitochondrial import inner mem... [more]
TIM16_XENTR4.3e-841.9Mitochondrial import inner mem... [more]
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BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G59280.12.9e-3970.8Protein Transporter, Pam16[more]
AT5G61880.11.3e-3163.1Protein Transporter, Pam16[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005341Mitochondrial import inner membrane translocase subunit Tim16PANTHERPTHR12388MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULEcoord: 2..109
score: 1.9
NoneNo IPR availablePANTHERPTHR12388:SF2SUBFAMILY NOT NAMEDcoord: 2..109
score: 1.9
NoneNo IPR availablePFAMPF03656Pam16coord: 5..106
score: 3.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0006457 protein folding
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0009408 response to heat
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0007165 signal transduction
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005618 cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004674 protein serine/threonine kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo115730.69Barchart | Table
Spo126660.68Barchart | Table
Spo043820.67Barchart | Table
Spo182310.67Barchart | Table
Spo159490.66Barchart | Table
Spo185260.66Barchart | Table